Gchil1661.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1661.t1
Unique NameGchil1661.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1430911..1433046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704692.1
PFAMsGYR,YLP
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0005488,GO:0005515
Evalue9.13e-16
EggNOG OGs2CKD8@1|root,2QVCG@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1661Gchil1661Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1430911..1433046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1661.t1Gchil1661.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1430911..1433046 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1661.t1.start1Gchil1661.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1430911..1430913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1661.t1.CDS1Gchil1661.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1430911..1431846 +
Gchil1661.t1.CDS2Gchil1661.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1432245..1432252 +
Gchil1661.t1.CDS3Gchil1661.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1432424..1432859 +
Gchil1661.t1.CDS4Gchil1661.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1432987..1433046 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1661.t1.exon1Gchil1661.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1430911..1431846 +
Gchil1661.t1.exon2Gchil1661.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1432245..1432252 +
Gchil1661.t1.exon3Gchil1661.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1432424..1432859 +
Gchil1661.t1.exon4Gchil1661.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1432987..1433046 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1661.t1.intron1Gchil1661.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1431847..1432244 +
Gchil1661.t1.intron2Gchil1661.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1432253..1432423 +
Gchil1661.t1.intron3Gchil1661.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1432860..1432986 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1661.t1.stop1Gchil1661.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1433044..1433046 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1661.t1 ID=Gchil1661.t1|Name=Gchil1661.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=480bp
MIRRFYVSLLLALALLVSVWGEEELDLQSMSSAQLSDLEKKLGGEVADRT
KELDTIREDIKNLKDQQAAIDEEAQHLQGAKEWELKEKEKREKELVAAKN
DVLAKQDSIARMSTQVASLKDHIQQFETRLQLLNQEKDSTEKRFHDPTLA
DVLESRSHNWGNVSRNLLNKTMTDVVPIFSDISETARTYRRQVSRTSKPL
EVLTSLFIYAFMILAAVSVYRIYSKVKGKLTIARLLFLGDVFCACFWLVM
LICFIVLFDDPLYVMKHRFSTAFFLFQLVACFSYINFVLLRVLVLASKMT
LGALGETLGVVVEPRNFAEHNMFSVKKRALSARDIELTTVGVGATVCHGE
NTSPRMTEGPERFIFKSDFSIYGHAACAVAIDKVAPLYHEAFHNSVKKNI
FVADWLAILPVFTSAKLAKILGCLGAYICEKFHCYTSNFFVSNFYVEEYD
RILFIMVIKGIAHLNESRDPSEIPRRSYR*
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spliced messenger RNA

>Gchil1661.t1 ID=Gchil1661.t1|Name=Gchil1661.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00004403_pilon:1430911..1433046+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGCCGCTTTTACGTTTCCCTCCTGCTTGCGCTCGCGCTTCTTGT
TTCCGTATGGGGAGAGGAGGAACTTGATCTGCAGAGCATGTCATCGGCAC
AGCTATCTGACTTGGAAAAAAAGTTGGGCGGCGAGGTTGCTGATCGCACC
AAGGAGCTCGACACCATTCGCGAGGACATAAAAAATCTCAAGGACCAACA
GGCCGCCATTGATGAAGAGGCACAGCACTTGCAGGGCGCCAAGGAGTGGG
AACTGAAGGAAAAAGAGAAGCGCGAGAAGGAGCTGGTGGCTGCCAAGAAC
GACGTCCTCGCCAAACAAGATTCTATCGCCAGAATGTCCACGCAGGTCGC
CTCTCTCAAGGATCATATTCAGCAGTTTGAAACTCGACTTCAACTCCTTA
ACCAGGAGAAGGATTCCACCGAGAAGAGGTTTCACGATCCAACACTAGCT
GATGTCCTCGAGTCGCGTTCGCACAATTGGGGCAATGTGTCACGAAATCT
TTTAAACAAGACCATGACAGATGTCGTACCAATCTTCTCCGACATCTCTG
AAACAGCACGTACCTATCGCCGCCAAGTTTCTAGAACTTCAAAGCCTCTT
GAAGTGCTCACTTCGTTGTTCATCTACGCCTTCATGATCCTCGCAGCCGT
TTCAGTGTACAGAATATATTCGAAAGTGAAGGGAAAGCTCACTATCGCGC
GACTACTCTTTTTGGGCGATGTATTCTGCGCCTGCTTCTGGCTTGTTATG
TTGATATGTTTTATCGTTTTGTTCGATGATCCTCTTTATGTCATGAAGCA
CCGATTCTCTACAGCCTTTTTCTTGTTTCAGTTGGTCGCATGCTTTTCGT
ACATTAACTTCGTCCTGCTTCGTGTTCTAGTTTTGGCATCCAAGATGACT
CTGGGTGCTCTTGGCGAAACCTTGGGCGTCGTCGTGGAACCTCGCAACTT
TGCCGAACACAACATGTTTTCCGTCAAGAAAAGGGCATTGTCTGCACGTG
ATATAGAACTGACAACCGTTGGTGTTGGGGCCACTGTTTGCCATGGCGAG
AATACCAGCCCCAGAATGACGGAAGGCCCCGAGAGATTCATCTTTAAAAG
CGATTTCTCCATATATGGACATGCAGCCTGTGCCGTCGCCATTGACAAAG
TCGCCCCCTTGTATCATGAAGCCTTTCACAATTCTGTGAAAAAGAACATC
TTTGTAGCCGATTGGCTTGCTATTCTTCCTGTATTCACCAGTGCAAAACT
GGCGAAAATTCTCGGCTGTCTTGGGGCATACATCTGCGAAAAGTTCCATT
GTTATACGTCCAATTTCTTCGTCTCCAATTTTTACGTCGAAGAATACGAT
CGGATTCTGTTCATCATGGTGATTAAGGGCATTGCGCATTTGAATGAATC
TCGCGATCCTTCCGAAATCCCGAGGCGGTCGTACCGCTAA
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protein sequence of Gchil1661.t1

>Gchil1661.t1 ID=Gchil1661.t1|Name=Gchil1661.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=480bp
MIRRFYVSLLLALALLVSVWGEEELDLQSMSSAQLSDLEKKLGGEVADRT
KELDTIREDIKNLKDQQAAIDEEAQHLQGAKEWELKEKEKREKELVAAKN
DVLAKQDSIARMSTQVASLKDHIQQFETRLQLLNQEKDSTEKRFHDPTLA
DVLESRSHNWGNVSRNLLNKTMTDVVPIFSDISETARTYRRQVSRTSKPL
EVLTSLFIYAFMILAAVSVYRIYSKVKGKLTIARLLFLGDVFCACFWLVM
LICFIVLFDDPLYVMKHRFSTAFFLFQLVACFSYINFVLLRVLVLASKMT
LGALGETLGVVVEPRNFAEHNMFSVKKRALSARDIELTTVGVGATVCHGE
NTSPRMTEGPERFIFKSDFSIYGHAACAVAIDKVAPLYHEAFHNSVKKNI
FVADWLAILPVFTSAKLAKILGCLGAYICEKFHCYTSNFFVSNFYVEEYD
RILFIMVIKGIAHLNESRDPSEIPRRSYR*
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mRNA from alignment at tig00004403_pilon:1430911..1433046+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1661.t1 ID=Gchil1661.t1|Name=Gchil1661.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2136bp|location=Sequence derived from alignment at tig00004403_pilon:1430911..1433046+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTCGCCGCTTTTACGTTTCCCTCCTGCTTGCGCTCGCGCTTCTTGT
TTCCGTATGGGGAGAGGAGGAACTTGATCTGCAGAGCATGTCATCGGCAC
AGCTATCTGACTTGGAAAAAAAGTTGGGCGGCGAGGTTGCTGATCGCACC
AAGGAGCTCGACACCATTCGCGAGGACATAAAAAATCTCAAGGACCAACA
GGCCGCCATTGATGAAGAGGCACAGCACTTGCAGGGCGCCAAGGAGTGGG
AACTGAAGGAAAAAGAGAAGCGCGAGAAGGAGCTGGTGGCTGCCAAGAAC
GACGTCCTCGCCAAACAAGATTCTATCGCCAGAATGTCCACGCAGGTCGC
CTCTCTCAAGGATCATATTCAGCAGTTTGAAACTCGACTTCAACTCCTTA
ACCAGGAGAAGGATTCCACCGAGAAGAGGTTTCACGATCCAACACTAGCT
GATGTCCTCGAGTCGCGTTCGCACAATTGGGGCAATGTGTCACGAAATCT
TTTAAACAAGACCATGACAGATGTCGTACCAATCTTCTCCGACATCTCTG
AAACAGCACGTACCTATCGCCGCCAAGTTTCTAGAACTTCAAAGCCTCTT
GAAGTGCTCACTTCGTTGTTCATCTACGCCTTCATGATCCTCGCAGCCGT
TTCAGTGTACAGAATATATTCGAAAGTGAAGGGAAAGCTCACTATCGCGC
GACTACTCTTTTTGGGCGATGTATTCTGCGCCTGCTTCTGGCTTGTTATG
TTGATATGTTTTATCGTTTTGTTCGATGATCCTCTTTATGTCATGAAGCA
CCGATTCTCTACAGCCTTTTTCTTGTTTCAGTTGGTCGCATGCTTTTCGT
ACATTAACTTCGTCCTGCTTCGTGTTCTAGTTTTGGCATCCAAGATGACT
CTGGGTGCTCTTGGCGAAACCTTGGGCGTCGTCGTGGTAGGTCATCACTA
CTACGTCAGAGTCTGGCAACCAGCGATTCTTGACAGACCCTTCCGAGGTA
CCTTCTTTTATTACTTTTGTTATTGTTGGTTGTTTACCGCCTTTGCATAC
AGCAGAATCCAAGAATTTGCACCCCTCAAGCAATTGAGAGGTCCAAAGCT
CCCACCTCTAATGTGGCTTCGAGTACTGTTTGCAAGATTTACGGCGCGTG
GGGTACCAGACGGAGATATCGAGAACATTCCATATGAAGACTCCGACGAC
GAAGGCCACGAACGTTAATGGTTATCTTCGGTAAGAAAAGTCTCACCACA
GGTCACTCTTTTCCATGCTGGGAACGGGTCTCAGCTCTGGCAGTTATGTA
AAACAACCAAGACTGCGCTAACATCAAAATTTAGGAACCTCGGTATGTTA
TCACTGcattaattcactcattcattccgtcttcatACCCTGAGCCCACT
TCTTGGTCAAAGCTCTCCGCATTGCACAATCTTGCCCTCCAAAATGGGTC
GACTTTTATTATCTACAGAAACGTTTTCCAGCTTTCTAACCACATGCATC
GACTCTTCGTTAGCAACTTTGCCGAACACAACATGTTTTCCGTCAAGAAA
AGGGCATTGTCTGCACGTGATATAGAACTGACAACCGTTGGTGTTGGGGC
CACTGTTTGCCATGGCGAGAATACCAGCCCCAGAATGACGGAAGGCCCCG
AGAGATTCATCTTTAAAAGCGATTTCTCCATATATGGACATGCAGCCTGT
GCCGTCGCCATTGACAAAGTCGCCCCCTTGTATCATGAAGCCTTTCACAA
TTCTGTGAAAAAGAACATCTTTGTAGCCGATTGGCTTGCTATTCTTCCTG
TATTCACCAGTGCAAAACTGGCGAAAATTCTCGGCTGTCTTGGGGCATAC
ATCTGCGAAAAGTTCCATTGTTATACGTCCAATTTCTTCGTCTCCAATTT
TTACGTCGAAGAATACGATCGGATTCTGTTCATCATGGTGATTAAGGGCG
TCCGTGGGATCTCCAATTGGAATTGTCGTCATACTTGCGTAAAACGTGAT
TGTTTTTCTTTCTGCCCTACGTGTCCTTCGTATTTAAAATCATAAGACAC
CCTTTAGCGTATCTACATGTACTAAGATTGCGCATTTGAATGAATCTCGC
GATCCTTCCGAAATCCCGAGGCGGTCGTACCGCTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1430911..1433046+

>Gchil1661.t1 ID=Gchil1661.t1|Name=Gchil1661.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1440bp|location=Sequence derived from alignment at tig00004403_pilon:1430911..1433046+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTCGCCGCTTTTACGTTTCCCTCCTGCTTGCGCTCGCGCTTCTTGT
TTCCGTATGGGGAGAGGAGGAACTTGATCTGCAGAGCATGTCATCGGCAC
AGCTATCTGACTTGGAAAAAAAGTTGGGCGGCGAGGTTGCTGATCGCACC
AAGGAGCTCGACACCATTCGCGAGGACATAAAAAATCTCAAGGACCAACA
GGCCGCCATTGATGAAGAGGCACAGCACTTGCAGGGCGCCAAGGAGTGGG
AACTGAAGGAAAAAGAGAAGCGCGAGAAGGAGCTGGTGGCTGCCAAGAAC
GACGTCCTCGCCAAACAAGATTCTATCGCCAGAATGTCCACGCAGGTCGC
CTCTCTCAAGGATCATATTCAGCAGTTTGAAACTCGACTTCAACTCCTTA
ACCAGGAGAAGGATTCCACCGAGAAGAGGTTTCACGATCCAACACTAGCT
GATGTCCTCGAGTCGCGTTCGCACAATTGGGGCAATGTGTCACGAAATCT
TTTAAACAAGACCATGACAGATGTCGTACCAATCTTCTCCGACATCTCTG
AAACAGCACGTACCTATCGCCGCCAAGTTTCTAGAACTTCAAAGCCTCTT
GAAGTGCTCACTTCGTTGTTCATCTACGCCTTCATGATCCTCGCAGCCGT
TTCAGTGTACAGAATATATTCGAAAGTGAAGGGAAAGCTCACTATCGCGC
GACTACTCTTTTTGGGCGATGTATTCTGCGCCTGCTTCTGGCTTGTTATG
TTGATATGTTTTATCGTTTTGTTCGATGATCCTCTTTATGTCATGAAGCA
CCGATTCTCTACAGCCTTTTTCTTGTTTCAGTTGGTCGCATGCTTTTCGT
ACATTAACTTCGTCCTGCTTCGTGTTCTAGTTTTGGCATCCAAGATGACT
CTGGGTGCTCTTGGCGAAACCTTGGGCGTCGTCGTGGAACCTCGCAACTT
TGCCGAACACAACATGTTTTCCGTCAAGAAAAGGGCATTGTCTGCACGTG
ATATAGAACTGACAACCGTTGGTGTTGGGGCCACTGTTTGCCATGGCGAG
AATACCAGCCCCAGAATGACGGAAGGCCCCGAGAGATTCATCTTTAAAAG
CGATTTCTCCATATATGGACATGCAGCCTGTGCCGTCGCCATTGACAAAG
TCGCCCCCTTGTATCATGAAGCCTTTCACAATTCTGTGAAAAAGAACATC
TTTGTAGCCGATTGGCTTGCTATTCTTCCTGTATTCACCAGTGCAAAACT
GGCGAAAATTCTCGGCTGTCTTGGGGCATACATCTGCGAAAAGTTCCATT
GTTATACGTCCAATTTCTTCGTCTCCAATTTTTACGTCGAAGAATACGAT
CGGATTCTGTTCATCATGGTGATTAAGGGCATTGCGCATTTGAATGAATC
TCGCGATCCTTCCGAAATCCCGAGGCGGTCGTACCGCTAA
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