Gchil1659.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1659.t1
Unique NameGchil1659.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length486
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1425802..1427601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LSY5
PFAMsPkinase
Max annot lvl2759|Eukaryota
Evalue3.59e-69
EggNOG OGs28J07@1|root,2QRC4@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1659Gchil1659Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1425802..1427601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1659.t1Gchil1659.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1425802..1427601 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1659.t1.start1Gchil1659.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1425802..1425804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1659.t1.CDS1Gchil1659.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1425802..1425870 +
Gchil1659.t1.CDS2Gchil1659.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1426011..1426083 +
Gchil1659.t1.CDS3Gchil1659.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1426286..1427601 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1659.t1.exon1Gchil1659.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1425802..1425870 +
Gchil1659.t1.exon2Gchil1659.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1426011..1426083 +
Gchil1659.t1.exon3Gchil1659.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1426286..1427601 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1659.t1.intron1Gchil1659.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1425871..1426010 +
Gchil1659.t1.intron2Gchil1659.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1426084..1426285 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1659.t1.stop1Gchil1659.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1427599..1427601 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1659.t1 ID=Gchil1659.t1|Name=Gchil1659.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=486bp
MRDALRRPGQIGTASYEILSKAEKAKYCGIIRYKRTSHSSSEGKSAQSSH
TPHHALFPRHSRSKMHERLSRPAFVTSLTPCFVQRNSIHVLRTCPIRARH
QTTNPHPKALLVDFSPSDFEIRRVVGQQGYATITDWEYYVPKDPLAPTRT
VESNEPSIRLYEAVITVSRPAMFNTRVLLKEFLADGVELGVNEAEAYKAL
YEADGGPAAIEPDVVPVATLLGSFLTDESFGEPSFRQAWRNQFPNVPDAP
RVGAPFLVFRWEGLKTGLQCAAPRNDADEIGNKLFDSIFRPNLLRRQAVF
VRKFMQLSIDALLYLHGTGGIVHRSISLASILVNTIEYRLASSLQVKLRD
FGFARPVSALVTGENLERARKAGAVTPREIAAYHFGEDIYALGYAFLELI
FSTFSGKPVTQDRFKKLFEDTFKLDVVPFREYCAQDPDWVAAVEFLDEQN
KSGWDLLKVMLSARNSFKDVSLKDIQLLSFLKDDA*
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spliced messenger RNA

>Gchil1659.t1 ID=Gchil1659.t1|Name=Gchil1659.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at tig00004403_pilon:1425802..1427601+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGACGCTCTCCGTAGGCCTGGGCAGATCGGAACTGCATCATACGA
GATTCTTTCGAAGGCTGAGAAAGCAAAATACTGCGGAATTATCAGATATA
AGAGAACCTCACATTCTTCATCGGAGGGGAAATCCGCGCAAAGTTCTCAC
ACGCCGCATCACGCCCTGTTTCCTCGACATTCACGTAGCAAGATGCACGA
GCGATTGTCCCGTCCTGCCTTCGTGACATCACTTACACCGTGTTTTGTTC
AACGAAACTCCATCCACGTTTTGAGAACGTGTCCCATACGAGCGCGTCAT
CAGACGACAAACCCTCATCCTAAGGCTTTGCTTGTTGACTTTTCCCCCTC
TGATTTTGAAATCCGCCGGGTAGTTGGTCAACAAGGATACGCCACCATAA
CCGACTGGGAGTACTATGTTCCAAAAGATCCTCTCGCACCGACAAGGACT
GTCGAATCTAATGAACCATCCATTCGCTTGTACGAAGCCGTCATCACGGT
ATCGCGGCCCGCCATGTTTAACACACGTGTTTTGCTCAAAGAATTTCTGG
CAGATGGCGTTGAACTCGGGGTGAACGAAGCGGAAGCGTATAAAGCTCTT
TACGAAGCTGACGGGGGTCCAGCTGCTATTGAACCGGATGTTGTGCCTGT
GGCTACACTTCTTGGTTCTTTTCTGACAGACGAATCGTTTGGCGAACCAT
CTTTCAGACAAGCGTGGCGAAATCAGTTTCCCAATGTTCCGGATGCACCT
CGTGTTGGAGCTCCATTTCTTGTGTTCCGATGGGAAGGGCTGAAAACTGG
GCTTCAATGTGCAGCGCCTCGAAATGATGCTGACGAGATCGGAAACAAGT
TATTTGATAGCATCTTTCGGCCGAACCTCCTGCGCAGACAGGCTGTTTTT
GTGCGGAAGTTCATGCAGTTGAGTATCGACGCTTTGCTGTACCTGCATGG
CACGGGCGGAATAGTACACAGATCAATAAGTCTGGCCAGCATACTGGTAA
ACACCATCGAATACAGATTGGCGAGCTCACTGCAAGTGAAACTCCGCGAC
TTCGGGTTTGCACGACCAGTAAGTGCATTAGTGACCGGAGAAAATCTCGA
GCGCGCAAGAAAGGCTGGAGCCGTCACTCCCAGAGAAATAGCAGCATATC
ACTTTGGCGAAGATATTTATGCTCTTGGTTATGCTTTTCTTGAACTTATC
TTCTCAACTTTTAGTGGCAAACCAGTGACTCAAGACAGATTTAAGAAACT
ATTCGAAGATACTTTCAAACTTGACGTCGTCCCATTCCGGGAATACTGTG
CACAAGATCCTGACTGGGTAGCAGCTGTCGAATTTCTCGATGAACAAAAC
AAAAGTGGGTGGGATCTTCTCAAGGTCATGCTGAGCGCTCGAAATAGTTT
CAAAGACGTGTCGCTCAAAGACATTCAGCTTCTCTCTTTCTTGAAAGATG
ACGCATGA
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protein sequence of Gchil1659.t1

>Gchil1659.t1 ID=Gchil1659.t1|Name=Gchil1659.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=486bp
MRDALRRPGQIGTASYEILSKAEKAKYCGIIRYKRTSHSSSEGKSAQSSH
TPHHALFPRHSRSKMHERLSRPAFVTSLTPCFVQRNSIHVLRTCPIRARH
QTTNPHPKALLVDFSPSDFEIRRVVGQQGYATITDWEYYVPKDPLAPTRT
VESNEPSIRLYEAVITVSRPAMFNTRVLLKEFLADGVELGVNEAEAYKAL
YEADGGPAAIEPDVVPVATLLGSFLTDESFGEPSFRQAWRNQFPNVPDAP
RVGAPFLVFRWEGLKTGLQCAAPRNDADEIGNKLFDSIFRPNLLRRQAVF
VRKFMQLSIDALLYLHGTGGIVHRSISLASILVNTIEYRLASSLQVKLRD
FGFARPVSALVTGENLERARKAGAVTPREIAAYHFGEDIYALGYAFLELI
FSTFSGKPVTQDRFKKLFEDTFKLDVVPFREYCAQDPDWVAAVEFLDEQN
KSGWDLLKVMLSARNSFKDVSLKDIQLLSFLKDDA*
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mRNA from alignment at tig00004403_pilon:1425802..1427601+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1659.t1 ID=Gchil1659.t1|Name=Gchil1659.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1800bp|location=Sequence derived from alignment at tig00004403_pilon:1425802..1427601+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGACGCTCTCCGTAGGCCTGGGCAGATCGGAACTGCATCATACGA
GATTCTTTCGAAGGCTGAGGTACTGCGGGGGGAGGGAGGGTGATGGGTAT
TCCTTTAGGATATCAATTAGCGTTTCCCTGCCAAAGAGCCCTTGTATGCG
TTAGCTTTCCTTGCAGATGTTGAAGTTTTGACATTCACATTTGTGCTGAA
GATTAAAAGAAAGCAAAATACTGCGGAATTATCAGATATAAGAGAACCTC
ACATTCTTCATCGGAGGGGAAATCCGCGCAAAGTAAGTTTACCCATACGT
GATCATTTTTGTTCTACAAACCTCACGCTACCCAAACAATTCGTACACTC
GAATTCTGGCAGACTTCTTTCTCTTGTTAAAAAAGGAAGAGGCTCGACAC
CGCTAATGACTATTCTTCACCCGGACAAAAATGAGTCGCATTCTGATTCT
CACATATTCTCTGCTTTTGAAACAACTCGTGTAGGTTCTCACACGCCGCA
TCACGCCCTGTTTCCTCGACATTCACGTAGCAAGATGCACGAGCGATTGT
CCCGTCCTGCCTTCGTGACATCACTTACACCGTGTTTTGTTCAACGAAAC
TCCATCCACGTTTTGAGAACGTGTCCCATACGAGCGCGTCATCAGACGAC
AAACCCTCATCCTAAGGCTTTGCTTGTTGACTTTTCCCCCTCTGATTTTG
AAATCCGCCGGGTAGTTGGTCAACAAGGATACGCCACCATAACCGACTGG
GAGTACTATGTTCCAAAAGATCCTCTCGCACCGACAAGGACTGTCGAATC
TAATGAACCATCCATTCGCTTGTACGAAGCCGTCATCACGGTATCGCGGC
CCGCCATGTTTAACACACGTGTTTTGCTCAAAGAATTTCTGGCAGATGGC
GTTGAACTCGGGGTGAACGAAGCGGAAGCGTATAAAGCTCTTTACGAAGC
TGACGGGGGTCCAGCTGCTATTGAACCGGATGTTGTGCCTGTGGCTACAC
TTCTTGGTTCTTTTCTGACAGACGAATCGTTTGGCGAACCATCTTTCAGA
CAAGCGTGGCGAAATCAGTTTCCCAATGTTCCGGATGCACCTCGTGTTGG
AGCTCCATTTCTTGTGTTCCGATGGGAAGGGCTGAAAACTGGGCTTCAAT
GTGCAGCGCCTCGAAATGATGCTGACGAGATCGGAAACAAGTTATTTGAT
AGCATCTTTCGGCCGAACCTCCTGCGCAGACAGGCTGTTTTTGTGCGGAA
GTTCATGCAGTTGAGTATCGACGCTTTGCTGTACCTGCATGGCACGGGCG
GAATAGTACACAGATCAATAAGTCTGGCCAGCATACTGGTAAACACCATC
GAATACAGATTGGCGAGCTCACTGCAAGTGAAACTCCGCGACTTCGGGTT
TGCACGACCAGTAAGTGCATTAGTGACCGGAGAAAATCTCGAGCGCGCAA
GAAAGGCTGGAGCCGTCACTCCCAGAGAAATAGCAGCATATCACTTTGGC
GAAGATATTTATGCTCTTGGTTATGCTTTTCTTGAACTTATCTTCTCAAC
TTTTAGTGGCAAACCAGTGACTCAAGACAGATTTAAGAAACTATTCGAAG
ATACTTTCAAACTTGACGTCGTCCCATTCCGGGAATACTGTGCACAAGAT
CCTGACTGGGTAGCAGCTGTCGAATTTCTCGATGAACAAAACAAAAGTGG
GTGGGATCTTCTCAAGGTCATGCTGAGCGCTCGAAATAGTTTCAAAGACG
TGTCGCTCAAAGACATTCAGCTTCTCTCTTTCTTGAAAGATGACGCATGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1425802..1427601+

>Gchil1659.t1 ID=Gchil1659.t1|Name=Gchil1659.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1458bp|location=Sequence derived from alignment at tig00004403_pilon:1425802..1427601+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGACGCTCTCCGTAGGCCTGGGCAGATCGGAACTGCATCATACGA
GATTCTTTCGAAGGCTGAGAAAGCAAAATACTGCGGAATTATCAGATATA
AGAGAACCTCACATTCTTCATCGGAGGGGAAATCCGCGCAAAGTTCTCAC
ACGCCGCATCACGCCCTGTTTCCTCGACATTCACGTAGCAAGATGCACGA
GCGATTGTCCCGTCCTGCCTTCGTGACATCACTTACACCGTGTTTTGTTC
AACGAAACTCCATCCACGTTTTGAGAACGTGTCCCATACGAGCGCGTCAT
CAGACGACAAACCCTCATCCTAAGGCTTTGCTTGTTGACTTTTCCCCCTC
TGATTTTGAAATCCGCCGGGTAGTTGGTCAACAAGGATACGCCACCATAA
CCGACTGGGAGTACTATGTTCCAAAAGATCCTCTCGCACCGACAAGGACT
GTCGAATCTAATGAACCATCCATTCGCTTGTACGAAGCCGTCATCACGGT
ATCGCGGCCCGCCATGTTTAACACACGTGTTTTGCTCAAAGAATTTCTGG
CAGATGGCGTTGAACTCGGGGTGAACGAAGCGGAAGCGTATAAAGCTCTT
TACGAAGCTGACGGGGGTCCAGCTGCTATTGAACCGGATGTTGTGCCTGT
GGCTACACTTCTTGGTTCTTTTCTGACAGACGAATCGTTTGGCGAACCAT
CTTTCAGACAAGCGTGGCGAAATCAGTTTCCCAATGTTCCGGATGCACCT
CGTGTTGGAGCTCCATTTCTTGTGTTCCGATGGGAAGGGCTGAAAACTGG
GCTTCAATGTGCAGCGCCTCGAAATGATGCTGACGAGATCGGAAACAAGT
TATTTGATAGCATCTTTCGGCCGAACCTCCTGCGCAGACAGGCTGTTTTT
GTGCGGAAGTTCATGCAGTTGAGTATCGACGCTTTGCTGTACCTGCATGG
CACGGGCGGAATAGTACACAGATCAATAAGTCTGGCCAGCATACTGGTAA
ACACCATCGAATACAGATTGGCGAGCTCACTGCAAGTGAAACTCCGCGAC
TTCGGGTTTGCACGACCAGTAAGTGCATTAGTGACCGGAGAAAATCTCGA
GCGCGCAAGAAAGGCTGGAGCCGTCACTCCCAGAGAAATAGCAGCATATC
ACTTTGGCGAAGATATTTATGCTCTTGGTTATGCTTTTCTTGAACTTATC
TTCTCAACTTTTAGTGGCAAACCAGTGACTCAAGACAGATTTAAGAAACT
ATTCGAAGATACTTTCAAACTTGACGTCGTCCCATTCCGGGAATACTGTG
CACAAGATCCTGACTGGGTAGCAGCTGTCGAATTTCTCGATGAACAAAAC
AAAAGTGGGTGGGATCTTCTCAAGGTCATGCTGAGCGCTCGAAATAGTTT
CAAAGACGTGTCGCTCAAAGACATTCAGCTTCTCTCTTTCTTGAAAGATG
ACGCATGA
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