Gchil1654.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1654.t1
Unique NameGchil1654.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length521
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1411864..1413426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1654Gchil1654Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1411864..1413426 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1654.t1.stop1Gchil1654.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1411864..1411866 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1654.t1.CDS1Gchil1654.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1411864..1413426 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1654.t1.exon1Gchil1654.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1411864..1413426 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1654.t1.start1Gchil1654.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1413424..1413426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1654.t1Gchil1654.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1411864..1413426 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1654.t1 ID=Gchil1654.t1|Name=Gchil1654.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=521bp
MLVHYAISSSPSPAYAFAHASPLSHSLARTAVAQVCDTQRSLSTRKRPRL
PYTYPTCLASPPNIHEPDASRLQQARERTQHPSGPESIPPRKSMPTEDVN
CDIPHRKKSGQPPEFQRPRKRVVSAETRRRISFAMLGKPKPKAMREKVSK
AMKGRVPWNKGKKLSPEIRARMSEGRSGCTAWNRGKALKPTHRQAISQSM
LKIDRDISVETRQRMRMARRRPGDALVQGSIRLGSIGSYPLVDSADINAF
VTLRRELRVWSDKFKKYNSRRPTLADIRRFASVSIIRKFEKYVAMRGQIR
GLAGEVYGSVNPNDIPSVSTGEVSSAPRNNGARAIHITKYGNRRLVSTSA
DQKADNVGYNDGRHSLEGAVEDMWDMYDRPPTQSNTGRDQSNHMLIGTSE
HKNRNDRLTPRDYRMIGRYRLLESMDINRFVSLRRELQTWSDEFKEKHGR
KPALSDAKGEGKAALYHNFCEYLDIRDRMSGLVQEVYGTEVDDLETLVKA
NEEGKIKLDALRRESREKCY*
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spliced messenger RNA

>Gchil1654.t1 ID=Gchil1654.t1|Name=Gchil1654.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00004403_pilon:1411864..1413426- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGTCCACTATGCAATCAGCAGCTCTCCGTCCCCAGCTTACGCTTT
CGCTCACGCTTCCCCACTATCACACTCACTGGCTCGCACTGCTGTTGCAC
AAGTATGTGACACTCAACGCTCTCTTTCCACTCGAAAGCGCCCTCGTCTT
CCATATACCTATCCCACTTGCTTGGCGTCTCCTCCGAATATACACGAGCC
TGATGCATCACGTCTACAGCAAGCACGAGAGCGAACACAACATCCATCGG
GCCCCGAATCTATCCCACCTCGTAAATCAATGCCTACCGAGGATGTCAAC
TGTGATATTCCGCACCGAAAGAAATCTGGGCAACCACCTGAATTTCAGCG
ACCCCGGAAGCGTGTAGTTAGTGCGGAAACCCGCCGTCGCATTTCATTCG
CAATGCTAGGAAAGCCAAAGCCCAAAGCCATGCGTGAAAAAGTGTCCAAG
GCCATGAAGGGACGTGTTCCATGGAACAAAGGTAAGAAGCTTAGCCCTGA
AATTCGAGCCCGCATGTCGGAGGGGCGTTCTGGATGCACTGCGTGGAACA
GGGGCAAGGCACTGAAACCAACTCATCGCCAGGCAATCAGCCAGTCCATG
TTGAAGATTGATCGAGATATATCTGTCGAGACAAGGCAGAGAATGCGAAT
GGCTAGAAGAAGGCCGGGAGATGCTCTGGTTCAGGGTTCAATACGGCTGG
GTAGTATCGGTAGTTACCCGCTGGTGGATAGTGCTGACATAAATGCCTTT
GTCACATTGCGGCGTGAATTGCGCGTGTGGAGTGATAAGTTCAAAAAGTA
CAATTCGAGAAGACCCACTTTAGCAGACATTCGGCGATTTGCATCGGTTA
GTATTATTCGCAAGTTTGAGAAGTACGTAGCTATGAGAGGTCAGATTCGT
GGTCTTGCAGGTGAGGTTTACGGTTCGGTGAATCCAAATGACATTCCAAG
CGTTTCCACGGGAGAAGTGTCAAGTGCGCCGCGGAATAACGGTGCTAGGG
CTATACATATCACCAAATACGGCAATCGACGCCTTGTTTCAACGTCTGCC
GATCAAAAAGCTGACAACGTAGGGTATAACGATGGTCGCCATAGCTTGGA
AGGCGCTGTGGAGGACATGTGGGACATGTATGATAGGCCACCAACTCAGA
GCAATACCGGGCGTGATCAAAGCAATCATATGTTAATTGGGACAAGTGAA
CATAAGAATCGAAATGATCGCCTTACACCTCGTGACTACCGTATGATAGG
GCGTTATCGCCTCCTAGAGAGTATGGATATTAACCGCTTTGTTTCGCTAC
GGAGAGAACTTCAGACGTGGTCTGATGAATTCAAGGAAAAACATGGCAGA
AAACCGGCGTTGAGCGATGCTAAAGGCGAAGGGAAAGCAGCCCTCTACCA
CAATTTCTGTGAGTATCTTGATATCCGAGACAGGATGAGCGGCCTGGTGC
AGGAGGTCTATGGAACGGAAGTAGATGACCTGGAGACTCTGGTGAAGGCA
AATGAGGAAGGAAAGATAAAGTTAGATGCACTTCGTAGAGAGAGTCGGGA
GAAATGCTACTGA
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protein sequence of Gchil1654.t1

>Gchil1654.t1 ID=Gchil1654.t1|Name=Gchil1654.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=521bp
MLVHYAISSSPSPAYAFAHASPLSHSLARTAVAQVCDTQRSLSTRKRPRL
PYTYPTCLASPPNIHEPDASRLQQARERTQHPSGPESIPPRKSMPTEDVN
CDIPHRKKSGQPPEFQRPRKRVVSAETRRRISFAMLGKPKPKAMREKVSK
AMKGRVPWNKGKKLSPEIRARMSEGRSGCTAWNRGKALKPTHRQAISQSM
LKIDRDISVETRQRMRMARRRPGDALVQGSIRLGSIGSYPLVDSADINAF
VTLRRELRVWSDKFKKYNSRRPTLADIRRFASVSIIRKFEKYVAMRGQIR
GLAGEVYGSVNPNDIPSVSTGEVSSAPRNNGARAIHITKYGNRRLVSTSA
DQKADNVGYNDGRHSLEGAVEDMWDMYDRPPTQSNTGRDQSNHMLIGTSE
HKNRNDRLTPRDYRMIGRYRLLESMDINRFVSLRRELQTWSDEFKEKHGR
KPALSDAKGEGKAALYHNFCEYLDIRDRMSGLVQEVYGTEVDDLETLVKA
NEEGKIKLDALRRESREKCY*
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mRNA from alignment at tig00004403_pilon:1411864..1413426-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1654.t1 ID=Gchil1654.t1|Name=Gchil1654.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00004403_pilon:1411864..1413426- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGTCCACTATGCAATCAGCAGCTCTCCGTCCCCAGCTTACGCTTT
CGCTCACGCTTCCCCACTATCACACTCACTGGCTCGCACTGCTGTTGCAC
AAGTATGTGACACTCAACGCTCTCTTTCCACTCGAAAGCGCCCTCGTCTT
CCATATACCTATCCCACTTGCTTGGCGTCTCCTCCGAATATACACGAGCC
TGATGCATCACGTCTACAGCAAGCACGAGAGCGAACACAACATCCATCGG
GCCCCGAATCTATCCCACCTCGTAAATCAATGCCTACCGAGGATGTCAAC
TGTGATATTCCGCACCGAAAGAAATCTGGGCAACCACCTGAATTTCAGCG
ACCCCGGAAGCGTGTAGTTAGTGCGGAAACCCGCCGTCGCATTTCATTCG
CAATGCTAGGAAAGCCAAAGCCCAAAGCCATGCGTGAAAAAGTGTCCAAG
GCCATGAAGGGACGTGTTCCATGGAACAAAGGTAAGAAGCTTAGCCCTGA
AATTCGAGCCCGCATGTCGGAGGGGCGTTCTGGATGCACTGCGTGGAACA
GGGGCAAGGCACTGAAACCAACTCATCGCCAGGCAATCAGCCAGTCCATG
TTGAAGATTGATCGAGATATATCTGTCGAGACAAGGCAGAGAATGCGAAT
GGCTAGAAGAAGGCCGGGAGATGCTCTGGTTCAGGGTTCAATACGGCTGG
GTAGTATCGGTAGTTACCCGCTGGTGGATAGTGCTGACATAAATGCCTTT
GTCACATTGCGGCGTGAATTGCGCGTGTGGAGTGATAAGTTCAAAAAGTA
CAATTCGAGAAGACCCACTTTAGCAGACATTCGGCGATTTGCATCGGTTA
GTATTATTCGCAAGTTTGAGAAGTACGTAGCTATGAGAGGTCAGATTCGT
GGTCTTGCAGGTGAGGTTTACGGTTCGGTGAATCCAAATGACATTCCAAG
CGTTTCCACGGGAGAAGTGTCAAGTGCGCCGCGGAATAACGGTGCTAGGG
CTATACATATCACCAAATACGGCAATCGACGCCTTGTTTCAACGTCTGCC
GATCAAAAAGCTGACAACGTAGGGTATAACGATGGTCGCCATAGCTTGGA
AGGCGCTGTGGAGGACATGTGGGACATGTATGATAGGCCACCAACTCAGA
GCAATACCGGGCGTGATCAAAGCAATCATATGTTAATTGGGACAAGTGAA
CATAAGAATCGAAATGATCGCCTTACACCTCGTGACTACCGTATGATAGG
GCGTTATCGCCTCCTAGAGAGTATGGATATTAACCGCTTTGTTTCGCTAC
GGAGAGAACTTCAGACGTGGTCTGATGAATTCAAGGAAAAACATGGCAGA
AAACCGGCGTTGAGCGATGCTAAAGGCGAAGGGAAAGCAGCCCTCTACCA
CAATTTCTGTGAGTATCTTGATATCCGAGACAGGATGAGCGGCCTGGTGC
AGGAGGTCTATGGAACGGAAGTAGATGACCTGGAGACTCTGGTGAAGGCA
AATGAGGAAGGAAAGATAAAGTTAGATGCACTTCGTAGAGAGAGTCGGGA
GAAATGCTACTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1411864..1413426-

>Gchil1654.t1 ID=Gchil1654.t1|Name=Gchil1654.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1563bp|location=Sequence derived from alignment at tig00004403_pilon:1411864..1413426- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGTCCACTATGCAATCAGCAGCTCTCCGTCCCCAGCTTACGCTTT
CGCTCACGCTTCCCCACTATCACACTCACTGGCTCGCACTGCTGTTGCAC
AAGTATGTGACACTCAACGCTCTCTTTCCACTCGAAAGCGCCCTCGTCTT
CCATATACCTATCCCACTTGCTTGGCGTCTCCTCCGAATATACACGAGCC
TGATGCATCACGTCTACAGCAAGCACGAGAGCGAACACAACATCCATCGG
GCCCCGAATCTATCCCACCTCGTAAATCAATGCCTACCGAGGATGTCAAC
TGTGATATTCCGCACCGAAAGAAATCTGGGCAACCACCTGAATTTCAGCG
ACCCCGGAAGCGTGTAGTTAGTGCGGAAACCCGCCGTCGCATTTCATTCG
CAATGCTAGGAAAGCCAAAGCCCAAAGCCATGCGTGAAAAAGTGTCCAAG
GCCATGAAGGGACGTGTTCCATGGAACAAAGGTAAGAAGCTTAGCCCTGA
AATTCGAGCCCGCATGTCGGAGGGGCGTTCTGGATGCACTGCGTGGAACA
GGGGCAAGGCACTGAAACCAACTCATCGCCAGGCAATCAGCCAGTCCATG
TTGAAGATTGATCGAGATATATCTGTCGAGACAAGGCAGAGAATGCGAAT
GGCTAGAAGAAGGCCGGGAGATGCTCTGGTTCAGGGTTCAATACGGCTGG
GTAGTATCGGTAGTTACCCGCTGGTGGATAGTGCTGACATAAATGCCTTT
GTCACATTGCGGCGTGAATTGCGCGTGTGGAGTGATAAGTTCAAAAAGTA
CAATTCGAGAAGACCCACTTTAGCAGACATTCGGCGATTTGCATCGGTTA
GTATTATTCGCAAGTTTGAGAAGTACGTAGCTATGAGAGGTCAGATTCGT
GGTCTTGCAGGTGAGGTTTACGGTTCGGTGAATCCAAATGACATTCCAAG
CGTTTCCACGGGAGAAGTGTCAAGTGCGCCGCGGAATAACGGTGCTAGGG
CTATACATATCACCAAATACGGCAATCGACGCCTTGTTTCAACGTCTGCC
GATCAAAAAGCTGACAACGTAGGGTATAACGATGGTCGCCATAGCTTGGA
AGGCGCTGTGGAGGACATGTGGGACATGTATGATAGGCCACCAACTCAGA
GCAATACCGGGCGTGATCAAAGCAATCATATGTTAATTGGGACAAGTGAA
CATAAGAATCGAAATGATCGCCTTACACCTCGTGACTACCGTATGATAGG
GCGTTATCGCCTCCTAGAGAGTATGGATATTAACCGCTTTGTTTCGCTAC
GGAGAGAACTTCAGACGTGGTCTGATGAATTCAAGGAAAAACATGGCAGA
AAACCGGCGTTGAGCGATGCTAAAGGCGAAGGGAAAGCAGCCCTCTACCA
CAATTTCTGTGAGTATCTTGATATCCGAGACAGGATGAGCGGCCTGGTGC
AGGAGGTCTATGGAACGGAAGTAGATGACCTGGAGACTCTGGTGAAGGCA
AATGAGGAAGGAAAGATAAAGTTAGATGCACTTCGTAGAGAGAGTCGGGA
GAAATGCTACTGA
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