Gchil1648.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1648.t1
Unique NameGchil1648.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1401321..1402211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010556664.1
PFAMsHep_59
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0007275,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009637,GO:0009642,GO:0009644,GO:0009892,GO:0010099,GO:0010605,GO:0016604,GO:0016607,GO:0019222,GO:0022622,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0048364,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0055121,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0080022,GO:0080090,GO:0099402,GO:1903320,GO:1903321,GO:1904666,GO:1904667,GO:2000026,GO:2000030
Evalue2.2e-08
EggNOG OGsKOG3345@1|root,KOG3345@2759|Eukaryota,37I0R@33090|Viridiplantae,3G7SN@35493|Streptophyta,3HRQM@3699|Brassicales
Descriptionprotein C9orf78 homolog
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1648Gchil1648Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1401321..1402211 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1648.t1.start1Gchil1648.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1401321..1401323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1648.t1.CDS1Gchil1648.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1401321..1402211 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1648.t1.exon1Gchil1648.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1401321..1402211 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1648.t1.stop1Gchil1648.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1402209..1402211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1648.t1Gchil1648.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1401321..1402211 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1648.t1 ID=Gchil1648.t1|Name=Gchil1648.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=297bp
MENSQASAEAQCQGSTNKSLSEFKPLESNATPLFRVRKRSQKARKKRSLE
RNKGGVDEDEGISKTDLLLLKEAQVMREKIRLAALDTGLSGRKRKSYPEQ
AEVENDGNNTAALGLRNNFAVERSNNVMEEHMKNYIEEGIRKKFGQQETG
GSLKNSHDLQEENLYAIPEHLKVEERQQYDPGEGMPTAGVEEIELPEHVR
RKNEIETLRAREKLEEQCNIEGRPKSSNSACIEDKSHAIFGLSKGSSSDP
NTTYCQQGHRQTHQAAQTDIPNTKKRRFRHATDNLVADRFRKRWRR*
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spliced messenger RNA

>Gchil1648.t1 ID=Gchil1648.t1|Name=Gchil1648.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00004403_pilon:1401321..1402211+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAACTCGCAAGCAAGTGCGGAGGCACAGTGTCAAGGCAGCACAAA
TAAGTCTTTATCAGAATTTAAGCCACTTGAGTCAAATGCAACACCACTGT
TTCGAGTCCGAAAGCGTTCCCAAAAGGCTCGAAAAAAGCGCTCTCTGGAA
AGAAATAAGGGTGGAGTTGATGAAGATGAAGGGATTTCAAAAACTGATCT
ACTTCTCCTGAAGGAGGCACAGGTCATGCGAGAGAAAATTCGCTTGGCAG
CACTGGATACCGGCTTATCAGGGAGAAAACGTAAATCATACCCAGAGCAA
GCGGAAGTTGAGAACGATGGCAACAATACCGCCGCCTTGGGTCTCCGTAA
TAATTTCGCAGTTGAGAGATCCAACAATGTAATGGAAGAGCACATGAAAA
ATTACATAGAGGAGGGCATTCGCAAAAAGTTCGGACAACAGGAAACCGGT
GGGAGTTTGAAAAACAGCCATGACCTGCAAGAGGAGAATTTGTACGCTAT
ACCCGAACATTTGAAAGTCGAAGAAAGACAGCAATATGACCCGGGTGAAG
GAATGCCGACGGCAGGTGTGGAGGAAATTGAGCTCCCAGAACACGTCCGC
CGCAAGAATGAGATAGAAACACTTCGAGCTCGAGAAAAACTCGAAGAACA
GTGCAATATCGAAGGCCGACCGAAAAGTTCCAATTCAGCATGTATTGAAG
ACAAATCGCATGCCATTTTCGGGTTAAGTAAGGGTAGTTCAAGCGACCCC
AACACCACTTATTGTCAACAAGGACACCGACAAACCCACCAAGCCGCACA
AACCGATATTCCTAATACTAAGAAACGACGTTTTAGACACGCGACTGATA
ATCTAGTTGCAGATCGCTTCCGTAAACGATGGCGGCGCTAA
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protein sequence of Gchil1648.t1

>Gchil1648.t1 ID=Gchil1648.t1|Name=Gchil1648.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=297bp
MENSQASAEAQCQGSTNKSLSEFKPLESNATPLFRVRKRSQKARKKRSLE
RNKGGVDEDEGISKTDLLLLKEAQVMREKIRLAALDTGLSGRKRKSYPEQ
AEVENDGNNTAALGLRNNFAVERSNNVMEEHMKNYIEEGIRKKFGQQETG
GSLKNSHDLQEENLYAIPEHLKVEERQQYDPGEGMPTAGVEEIELPEHVR
RKNEIETLRAREKLEEQCNIEGRPKSSNSACIEDKSHAIFGLSKGSSSDP
NTTYCQQGHRQTHQAAQTDIPNTKKRRFRHATDNLVADRFRKRWRR*
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mRNA from alignment at tig00004403_pilon:1401321..1402211+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1648.t1 ID=Gchil1648.t1|Name=Gchil1648.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00004403_pilon:1401321..1402211+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAACTCGCAAGCAAGTGCGGAGGCACAGTGTCAAGGCAGCACAAA
TAAGTCTTTATCAGAATTTAAGCCACTTGAGTCAAATGCAACACCACTGT
TTCGAGTCCGAAAGCGTTCCCAAAAGGCTCGAAAAAAGCGCTCTCTGGAA
AGAAATAAGGGTGGAGTTGATGAAGATGAAGGGATTTCAAAAACTGATCT
ACTTCTCCTGAAGGAGGCACAGGTCATGCGAGAGAAAATTCGCTTGGCAG
CACTGGATACCGGCTTATCAGGGAGAAAACGTAAATCATACCCAGAGCAA
GCGGAAGTTGAGAACGATGGCAACAATACCGCCGCCTTGGGTCTCCGTAA
TAATTTCGCAGTTGAGAGATCCAACAATGTAATGGAAGAGCACATGAAAA
ATTACATAGAGGAGGGCATTCGCAAAAAGTTCGGACAACAGGAAACCGGT
GGGAGTTTGAAAAACAGCCATGACCTGCAAGAGGAGAATTTGTACGCTAT
ACCCGAACATTTGAAAGTCGAAGAAAGACAGCAATATGACCCGGGTGAAG
GAATGCCGACGGCAGGTGTGGAGGAAATTGAGCTCCCAGAACACGTCCGC
CGCAAGAATGAGATAGAAACACTTCGAGCTCGAGAAAAACTCGAAGAACA
GTGCAATATCGAAGGCCGACCGAAAAGTTCCAATTCAGCATGTATTGAAG
ACAAATCGCATGCCATTTTCGGGTTAAGTAAGGGTAGTTCAAGCGACCCC
AACACCACTTATTGTCAACAAGGACACCGACAAACCCACCAAGCCGCACA
AACCGATATTCCTAATACTAAGAAACGACGTTTTAGACACGCGACTGATA
ATCTAGTTGCAGATCGCTTCCGTAAACGATGGCGGCGCTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1401321..1402211+

>Gchil1648.t1 ID=Gchil1648.t1|Name=Gchil1648.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=891bp|location=Sequence derived from alignment at tig00004403_pilon:1401321..1402211+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAACTCGCAAGCAAGTGCGGAGGCACAGTGTCAAGGCAGCACAAA
TAAGTCTTTATCAGAATTTAAGCCACTTGAGTCAAATGCAACACCACTGT
TTCGAGTCCGAAAGCGTTCCCAAAAGGCTCGAAAAAAGCGCTCTCTGGAA
AGAAATAAGGGTGGAGTTGATGAAGATGAAGGGATTTCAAAAACTGATCT
ACTTCTCCTGAAGGAGGCACAGGTCATGCGAGAGAAAATTCGCTTGGCAG
CACTGGATACCGGCTTATCAGGGAGAAAACGTAAATCATACCCAGAGCAA
GCGGAAGTTGAGAACGATGGCAACAATACCGCCGCCTTGGGTCTCCGTAA
TAATTTCGCAGTTGAGAGATCCAACAATGTAATGGAAGAGCACATGAAAA
ATTACATAGAGGAGGGCATTCGCAAAAAGTTCGGACAACAGGAAACCGGT
GGGAGTTTGAAAAACAGCCATGACCTGCAAGAGGAGAATTTGTACGCTAT
ACCCGAACATTTGAAAGTCGAAGAAAGACAGCAATATGACCCGGGTGAAG
GAATGCCGACGGCAGGTGTGGAGGAAATTGAGCTCCCAGAACACGTCCGC
CGCAAGAATGAGATAGAAACACTTCGAGCTCGAGAAAAACTCGAAGAACA
GTGCAATATCGAAGGCCGACCGAAAAGTTCCAATTCAGCATGTATTGAAG
ACAAATCGCATGCCATTTTCGGGTTAAGTAAGGGTAGTTCAAGCGACCCC
AACACCACTTATTGTCAACAAGGACACCGACAAACCCACCAAGCCGCACA
AACCGATATTCCTAATACTAAGAAACGACGTTTTAGACACGCGACTGATA
ATCTAGTTGCAGATCGCTTCCGTAAACGATGGCGGCGCTAA
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