Gchil1647.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1647.t1
Unique NameGchil1647.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1400018..1400753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704621.1
Preferred nameTRAPPC5
PFAMsTRAPP
Max annot lvl2759|Eukaryota
KEGG koko:K02332,ko:K10840,ko:K20280
KEGG Pathwayko01100,ko03420,ko04139,map01100,map03420,map04139
KEGG ModuleM00294
GOsGO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005793,GO:0005794,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0022607,GO:0030008,GO:0031267,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0051020,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0065003,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090114,GO:0097708,GO:0098772,GO:0099023,GO:1990070,GO:1990071,GO:1990072
Evalue1.62e-56
EggNOG OGsCOG5128@1|root,KOG3315@2759|Eukaryota
EC2.7.7.7
DescriptionGolgi vesicle transport
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko03032,ko03036,ko03400,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1647Gchil1647Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1400018..1400753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1647.t1Gchil1647.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1400018..1400753 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1647.t1.stop1Gchil1647.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1400018..1400020 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1647.t1.CDS1Gchil1647.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1400018..1400277 -
Gchil1647.t1.CDS2Gchil1647.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1400393..1400753 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1647.t1.exon1Gchil1647.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1400018..1400277 -
Gchil1647.t1.exon2Gchil1647.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1400393..1400753 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1647.t1.intron1Gchil1647.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1400278..1400392 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1647.t1.start1Gchil1647.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1400751..1400753 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1647.t1 ID=Gchil1647.t1|Name=Gchil1647.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=207bp
MLSDISTSTSSTGVTKSILEKSLAQARGEVNMDAYLALFAELVSYCRDRV
ESVMALQEKLSQLGYRIGRRALDLIIAREKISKRDTRLRNILSFIALTLW
TFLYGKQADSLKKVRDSDLEYYIEEAEPLVNRYISVPADYGHFNCAAFSA
GIINGVLNSAGFPAEVTAKVLARDNENETPSQGQPLTIYYIKFEPEVLER
EQRLGT*
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spliced messenger RNA

>Gchil1647.t1 ID=Gchil1647.t1|Name=Gchil1647.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00004403_pilon:1400018..1400753- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTCTGATATTTCCACAAGTACTTCGTCAACAGGCGTAACAAAAAG
TATATTGGAGAAGAGTCTGGCACAAGCAAGAGGTGAAGTGAATATGGATG
CATACCTCGCCTTATTTGCAGAACTAGTCTCATATTGCCGGGATCGTGTG
GAATCAGTAATGGCTCTACAGGAGAAACTGTCGCAACTCGGATACAGAAT
TGGTCGCCGGGCATTGGATCTGATCATTGCGAGGGAAAAGATATCAAAAC
GAGACACGCGCCTTCGCAACATTCTTAGTTTTATCGCGCTCACACTGTGG
ACGTTTCTGTATGGAAAACAAGCGGACTCTTTGAAGAAAGTGCGTGATTC
TGATCTGGAATACTATATTGAAGAAGCCGAGCCTTTGGTTAACAGGTACA
TCTCGGTACCAGCGGACTACGGTCACTTTAACTGCGCAGCTTTCTCCGCA
GGTATAATCAATGGGGTGTTGAATTCGGCTGGGTTCCCTGCAGAGGTAAC
AGCTAAGGTGTTAGCTCGAGACAACGAGAACGAGACACCGTCGCAAGGGC
AGCCGTTGACAATTTACTACATCAAATTCGAGCCCGAAGTGTTGGAACGA
GAACAGAGACTAGGCACTTGA
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protein sequence of Gchil1647.t1

>Gchil1647.t1 ID=Gchil1647.t1|Name=Gchil1647.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=207bp
MLSDISTSTSSTGVTKSILEKSLAQARGEVNMDAYLALFAELVSYCRDRV
ESVMALQEKLSQLGYRIGRRALDLIIAREKISKRDTRLRNILSFIALTLW
TFLYGKQADSLKKVRDSDLEYYIEEAEPLVNRYISVPADYGHFNCAAFSA
GIINGVLNSAGFPAEVTAKVLARDNENETPSQGQPLTIYYIKFEPEVLER
EQRLGT*
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mRNA from alignment at tig00004403_pilon:1400018..1400753-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1647.t1 ID=Gchil1647.t1|Name=Gchil1647.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=736bp|location=Sequence derived from alignment at tig00004403_pilon:1400018..1400753- (Gracilaria chilensis NLEC103_M9 male)
ATGTTGTCTGATATTTCCACAAGTACTTCGTCAACAGGCGTAACAAAAAG
TATATTGGAGAAGAGTCTGGCACAAGCAAGAGGTGAAGTGAATATGGATG
CATACCTCGCCTTATTTGCAGAACTAGTCTCATATTGCCGGGATCGTGTG
GAATCAGTAATGGCTCTACAGGAGAAACTGTCGCAACTCGGATACAGAAT
TGGTCGCCGGGCATTGGATCTGATCATTGCGAGGGAAAAGATATCAAAAC
GAGACACGCGCCTTCGCAACATTCTTAGTTTTATCGCGCTCACACTGTGG
ACGTTTCTGTATGGAAAACAAGCGGACTCTTTGAAGAAAGTGCGTGATTC
TGATCTGGAATGTAAGTTTTCTGTTCTCATATTGTTAATTCAATCCGTGC
GTGCCCCGACAGAAAGTTGTGTATGAGAATTATACTGACGTGTACCGTAC
GATTGTTCAATATGCATCGCAAAAAGACTATATTGAAGAAGCCGAGCCTT
TGGTTAACAGGTACATCTCGGTACCAGCGGACTACGGTCACTTTAACTGC
GCAGCTTTCTCCGCAGGTATAATCAATGGGGTGTTGAATTCGGCTGGGTT
CCCTGCAGAGGTAACAGCTAAGGTGTTAGCTCGAGACAACGAGAACGAGA
CACCGTCGCAAGGGCAGCCGTTGACAATTTACTACATCAAATTCGAGCCC
GAAGTGTTGGAACGAGAACAGAGACTAGGCACTTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1400018..1400753-

>Gchil1647.t1 ID=Gchil1647.t1|Name=Gchil1647.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=621bp|location=Sequence derived from alignment at tig00004403_pilon:1400018..1400753- (Gracilaria chilensis NLEC103_M9 male)
ATGTTGTCTGATATTTCCACAAGTACTTCGTCAACAGGCGTAACAAAAAG
TATATTGGAGAAGAGTCTGGCACAAGCAAGAGGTGAAGTGAATATGGATG
CATACCTCGCCTTATTTGCAGAACTAGTCTCATATTGCCGGGATCGTGTG
GAATCAGTAATGGCTCTACAGGAGAAACTGTCGCAACTCGGATACAGAAT
TGGTCGCCGGGCATTGGATCTGATCATTGCGAGGGAAAAGATATCAAAAC
GAGACACGCGCCTTCGCAACATTCTTAGTTTTATCGCGCTCACACTGTGG
ACGTTTCTGTATGGAAAACAAGCGGACTCTTTGAAGAAAGTGCGTGATTC
TGATCTGGAATACTATATTGAAGAAGCCGAGCCTTTGGTTAACAGGTACA
TCTCGGTACCAGCGGACTACGGTCACTTTAACTGCGCAGCTTTCTCCGCA
GGTATAATCAATGGGGTGTTGAATTCGGCTGGGTTCCCTGCAGAGGTAAC
AGCTAAGGTGTTAGCTCGAGACAACGAGAACGAGACACCGTCGCAAGGGC
AGCCGTTGACAATTTACTACATCAAATTCGAGCCCGAAGTGTTGGAACGA
GAACAGAGACTAGGCACTTGA
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