Gchil1645.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1645.t1
Unique NameGchil1645.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length311
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1394696..1395628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29760.VIT_17s0000g02520.t01
PFAMsDUF1295
Max annot lvl35493|Streptophyta
Evalue2.07e-113
EggNOG OGsCOG3752@1|root,KOG4650@2759|Eukaryota,37PTU@33090|Viridiplantae,3GCUP@35493|Streptophyta
Descriptionisoform X1
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1645Gchil1645Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1394696..1395628 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1645.t1.stop1Gchil1645.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1394696..1394698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1645.t1.CDS1Gchil1645.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1394696..1395628 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1645.t1.exon1Gchil1645.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1394696..1395628 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1645.t1.start1Gchil1645.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1395626..1395628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1645.t1Gchil1645.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1394696..1395628 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1645.t1 ID=Gchil1645.t1|Name=Gchil1645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=311bp
MSNPLDDRLLALTAIVTVLFQFSFFLVTYALRFDKLTDFAGTTNFILLAI
ITLTVGGAYNPRQIVLSTCVFAWGTRLCAFLLYRIILWGEDRRFDDKRDN
LAKLAAFWSLQAVWVWTVSLSITIVNSKPVSASLNGRDYVGWAIFAFAAI
LEAVADQQKLIFKNKPESKGRWTDYGVWKWSRHPNFFAEMLVWWGLFISA
TNDLDGAEYAAIASPIFITLLLLFVSGIPILEKSWAEKYGNKPGYLEWKD
KTSVLIPIPPSLYVRIPKIIKTTLLLDFKIYNPTPSTDADEKDVNTPNEQ
SSLVNREGQE*
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spliced messenger RNA

>Gchil1645.t1 ID=Gchil1645.t1|Name=Gchil1645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00004403_pilon:1394696..1395628- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAACCCGCTAGACGACCGCTTGCTGGCGCTTACCGCCATTGTCAC
CGTGCTCTTCCAGTTTTCCTTCTTCCTCGTCACGTATGCCTTGCGCTTCG
ACAAGCTCACGGACTTTGCCGGCACCACCAACTTCATTCTGTTGGCCATA
ATCACTCTCACTGTCGGCGGCGCTTACAACCCGCGTCAAATTGTCCTTTC
TACATGTGTTTTCGCCTGGGGTACTCGTCTGTGTGCCTTCCTCCTGTATC
GAATCATTCTGTGGGGTGAAGATCGCCGTTTTGACGACAAACGCGATAAT
CTTGCCAAACTGGCCGCCTTTTGGAGTTTGCAGGCTGTGTGGGTGTGGAC
CGTATCCCTCTCCATAACCATCGTCAACTCCAAGCCCGTCAGCGCCTCGT
TGAATGGCCGTGACTACGTCGGCTGGGCGATTTTCGCGTTCGCCGCAATC
CTGGAGGCTGTGGCAGACCAGCAGAAACTGATCTTTAAAAACAAGCCAGA
ATCAAAGGGCAGATGGACTGATTATGGCGTTTGGAAATGGAGTCGTCATC
CCAACTTTTTCGCCGAGATGCTGGTTTGGTGGGGTTTGTTTATCTCCGCT
ACCAACGATCTGGACGGAGCCGAATACGCAGCCATTGCTAGTCCCATTTT
CATTACCTTGTTACTGTTGTTCGTCAGTGGCATTCCCATTCTTGAAAAGT
CTTGGGCTGAAAAGTATGGAAACAAACCGGGTTATTTGGAGTGGAAAGAC
AAAACCAGCGTGCTCATTCCCATTCCACCTTCCCTTTACGTCAGAATACC
CAAGATTATCAAAACCACCTTGCTGCTTGATTTCAAAATTTACAACCCCA
CGCCTTCTACTGACGCCGATGAAAAAGATGTCAATACGCCCAATGAACAG
TCAAGCTTGGTGAATCGCGAAGGTCAAGAGTAG
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protein sequence of Gchil1645.t1

>Gchil1645.t1 ID=Gchil1645.t1|Name=Gchil1645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=311bp
MSNPLDDRLLALTAIVTVLFQFSFFLVTYALRFDKLTDFAGTTNFILLAI
ITLTVGGAYNPRQIVLSTCVFAWGTRLCAFLLYRIILWGEDRRFDDKRDN
LAKLAAFWSLQAVWVWTVSLSITIVNSKPVSASLNGRDYVGWAIFAFAAI
LEAVADQQKLIFKNKPESKGRWTDYGVWKWSRHPNFFAEMLVWWGLFISA
TNDLDGAEYAAIASPIFITLLLLFVSGIPILEKSWAEKYGNKPGYLEWKD
KTSVLIPIPPSLYVRIPKIIKTTLLLDFKIYNPTPSTDADEKDVNTPNEQ
SSLVNREGQE*
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mRNA from alignment at tig00004403_pilon:1394696..1395628-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1645.t1 ID=Gchil1645.t1|Name=Gchil1645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00004403_pilon:1394696..1395628- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCAACCCGCTAGACGACCGCTTGCTGGCGCTTACCGCCATTGTCAC
CGTGCTCTTCCAGTTTTCCTTCTTCCTCGTCACGTATGCCTTGCGCTTCG
ACAAGCTCACGGACTTTGCCGGCACCACCAACTTCATTCTGTTGGCCATA
ATCACTCTCACTGTCGGCGGCGCTTACAACCCGCGTCAAATTGTCCTTTC
TACATGTGTTTTCGCCTGGGGTACTCGTCTGTGTGCCTTCCTCCTGTATC
GAATCATTCTGTGGGGTGAAGATCGCCGTTTTGACGACAAACGCGATAAT
CTTGCCAAACTGGCCGCCTTTTGGAGTTTGCAGGCTGTGTGGGTGTGGAC
CGTATCCCTCTCCATAACCATCGTCAACTCCAAGCCCGTCAGCGCCTCGT
TGAATGGCCGTGACTACGTCGGCTGGGCGATTTTCGCGTTCGCCGCAATC
CTGGAGGCTGTGGCAGACCAGCAGAAACTGATCTTTAAAAACAAGCCAGA
ATCAAAGGGCAGATGGACTGATTATGGCGTTTGGAAATGGAGTCGTCATC
CCAACTTTTTCGCCGAGATGCTGGTTTGGTGGGGTTTGTTTATCTCCGCT
ACCAACGATCTGGACGGAGCCGAATACGCAGCCATTGCTAGTCCCATTTT
CATTACCTTGTTACTGTTGTTCGTCAGTGGCATTCCCATTCTTGAAAAGT
CTTGGGCTGAAAAGTATGGAAACAAACCGGGTTATTTGGAGTGGAAAGAC
AAAACCAGCGTGCTCATTCCCATTCCACCTTCCCTTTACGTCAGAATACC
CAAGATTATCAAAACCACCTTGCTGCTTGATTTCAAAATTTACAACCCCA
CGCCTTCTACTGACGCCGATGAAAAAGATGTCAATACGCCCAATGAACAG
TCAAGCTTGGTGAATCGCGAAGGTCAAGAGTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:1394696..1395628-

>Gchil1645.t1 ID=Gchil1645.t1|Name=Gchil1645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=933bp|location=Sequence derived from alignment at tig00004403_pilon:1394696..1395628- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCAACCCGCTAGACGACCGCTTGCTGGCGCTTACCGCCATTGTCAC
CGTGCTCTTCCAGTTTTCCTTCTTCCTCGTCACGTATGCCTTGCGCTTCG
ACAAGCTCACGGACTTTGCCGGCACCACCAACTTCATTCTGTTGGCCATA
ATCACTCTCACTGTCGGCGGCGCTTACAACCCGCGTCAAATTGTCCTTTC
TACATGTGTTTTCGCCTGGGGTACTCGTCTGTGTGCCTTCCTCCTGTATC
GAATCATTCTGTGGGGTGAAGATCGCCGTTTTGACGACAAACGCGATAAT
CTTGCCAAACTGGCCGCCTTTTGGAGTTTGCAGGCTGTGTGGGTGTGGAC
CGTATCCCTCTCCATAACCATCGTCAACTCCAAGCCCGTCAGCGCCTCGT
TGAATGGCCGTGACTACGTCGGCTGGGCGATTTTCGCGTTCGCCGCAATC
CTGGAGGCTGTGGCAGACCAGCAGAAACTGATCTTTAAAAACAAGCCAGA
ATCAAAGGGCAGATGGACTGATTATGGCGTTTGGAAATGGAGTCGTCATC
CCAACTTTTTCGCCGAGATGCTGGTTTGGTGGGGTTTGTTTATCTCCGCT
ACCAACGATCTGGACGGAGCCGAATACGCAGCCATTGCTAGTCCCATTTT
CATTACCTTGTTACTGTTGTTCGTCAGTGGCATTCCCATTCTTGAAAAGT
CTTGGGCTGAAAAGTATGGAAACAAACCGGGTTATTTGGAGTGGAAAGAC
AAAACCAGCGTGCTCATTCCCATTCCACCTTCCCTTTACGTCAGAATACC
CAAGATTATCAAAACCACCTTGCTGCTTGATTTCAAAATTTACAACCCCA
CGCCTTCTACTGACGCCGATGAAAAAGATGTCAATACGCCCAATGAACAG
TCAAGCTTGGTGAATCGCGAAGGTCAAGAGTAG
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