Gchil1643.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1643.t1
Unique NameGchil1643.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1388703..1390082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog176946.XP_007441798.1
Preferred nameN6AMT1
PFAMsMTS
Max annot lvl33208|Metazoa
KEGG koko:K19589
GOsGO:0001558,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0019538,GO:0030307,GO:0032259,GO:0032991,GO:0036211,GO:0040008,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045927,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Evalue3.43e-31
EggNOG OGsCOG2890@1|root,KOG3191@2759|Eukaryota,39XP3@33154|Opisthokonta,3BIZ2@33208|Metazoa,3CZB8@33213|Bilateria,486TK@7711|Chordata,4913K@7742|Vertebrata
EC2.1.1.297
DescriptionN-6 adenine-specific DNA methyltransferase 1
COG categoryJ
BRITEko00000,ko01000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1643Gchil1643Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1388703..1390082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1643.t1Gchil1643.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1388703..1390082 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1643.t1.start1Gchil1643.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1388703..1388705 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1643.t1.CDS1Gchil1643.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1388703..1388706 +
Gchil1643.t1.CDS2Gchil1643.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1388888..1388992 +
Gchil1643.t1.CDS3Gchil1643.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1389255..1389305 +
Gchil1643.t1.CDS4Gchil1643.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1389379..1389412 +
Gchil1643.t1.CDS5Gchil1643.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1389575..1390082 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1643.t1.exon1Gchil1643.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1388703..1388706 +
Gchil1643.t1.exon2Gchil1643.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1388888..1388992 +
Gchil1643.t1.exon3Gchil1643.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1389255..1389305 +
Gchil1643.t1.exon4Gchil1643.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1389379..1389412 +
Gchil1643.t1.exon5Gchil1643.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1389575..1390082 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1643.t1.intron1Gchil1643.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1388707..1388887 +
Gchil1643.t1.intron2Gchil1643.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1388993..1389254 +
Gchil1643.t1.intron3Gchil1643.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1389306..1389378 +
Gchil1643.t1.intron4Gchil1643.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1389413..1389574 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1643.t1.stop1Gchil1643.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1390080..1390082 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1643.t1 ID=Gchil1643.t1|Name=Gchil1643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=234bp
MLPSSLLPRYSLIHQFIVKLGLQLFTTAKGGAHFSDARSSSAFQVFIDGW
SRRPVACGGFCLEIGSGSGLVTETLATLIPKSFCFSSDVNILATAKTELL
LRNSSLKNVDSILCDLFTAFRPSFQFDVIVFNPPYVPTDDDELQRALTEH
DISAAWAGGKDGRQVIDRFLKALNNFLCETGVAYLTVLESNKITEVTQIA
EGLGLRAHQVMKRRAGIETLYILRFRKREINDS*
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spliced messenger RNA

>Gchil1643.t1 ID=Gchil1643.t1|Name=Gchil1643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00004403_pilon:1388703..1390082+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCGTCCTCGCTTCTACCACGCTATAGCTTGATACATCAATTCAT
CGTCAAGCTTGGGTTGCAACTATTTACAACAGCAAAGGGCGGAGCGCATT
TCTCTGACGCTCGATCTAGTTCTGCGTTTCAGGTATTCATAGATGGATGG
AGCCGACGGCCGGTCGCGTGTGGTGGGTTTTGCCTTGAAATCGGGTCTGG
TTCCGGACTGGTCACGGAAACCCTTGCTACTCTAATACCAAAGTCGTTCT
GCTTTTCCTCTGACGTAAACATTCTTGCAACGGCCAAGACGGAGCTACTC
TTGCGCAATAGCAGTCTCAAGAACGTCGATTCTATTCTTTGTGATCTCTT
CACCGCGTTTCGTCCGTCATTTCAGTTCGATGTGATAGTGTTCAACCCAC
CTTACGTCCCCACGGATGATGACGAATTACAACGTGCTCTGACAGAGCAC
GATATCTCTGCGGCGTGGGCAGGTGGAAAGGATGGTCGTCAAGTAATAGA
CAGGTTTCTAAAAGCTTTGAACAATTTTTTGTGTGAAACGGGCGTCGCAT
ATCTCACAGTGCTTGAATCTAACAAAATAACAGAAGTAACGCAAATTGCA
GAAGGTCTCGGTTTACGTGCACATCAAGTAATGAAACGAAGAGCTGGTAT
AGAAACATTGTACATCTTACGGTTTAGAAAACGAGAGATCAATGACTCCT
AA
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protein sequence of Gchil1643.t1

>Gchil1643.t1 ID=Gchil1643.t1|Name=Gchil1643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=234bp
MLPSSLLPRYSLIHQFIVKLGLQLFTTAKGGAHFSDARSSSAFQVFIDGW
SRRPVACGGFCLEIGSGSGLVTETLATLIPKSFCFSSDVNILATAKTELL
LRNSSLKNVDSILCDLFTAFRPSFQFDVIVFNPPYVPTDDDELQRALTEH
DISAAWAGGKDGRQVIDRFLKALNNFLCETGVAYLTVLESNKITEVTQIA
EGLGLRAHQVMKRRAGIETLYILRFRKREINDS*
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mRNA from alignment at tig00004403_pilon:1388703..1390082+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1643.t1 ID=Gchil1643.t1|Name=Gchil1643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at tig00004403_pilon:1388703..1390082+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTACGTGGTGAGCTGTGTATGGTCCGATGCAGCCCTCCAACATGAT
CATCATGAAGATGTTGGCCAACCATCATAATCTGCTTGAAAACAACATCA
AAAATTTTGAGCCATTTTTGTGCCCCCTTTGATGCCTGATCGTTCGCCGT
CCGTGGACCAAATCGGTTGTTGTCCCCGATCGCAGTTCCGTCCTCGCTTC
TACCACGCTATAGCTTGATACATCAATTCATCGTCAAGCTTGGGTTGCAA
CTATTTACAACAGCAAAGGGCGGAGCGCATTTCTCTGACGGTGAGTTCTT
AACATTCTCTTCGTTTTCCCATTAGGATCACCTTAGCCACCGGGCCAGTC
CCATATGATGAATCAATCAACACCTCAAAAAGGTGGACCTAGAGTATTCG
TACTTTGAGGAATCAAGATCAATCGCAACAACTTTCTGAAATCAAAAGCT
GGTTGACTCCGGGTGTATATGTTGCTGCAAGCCTTCAACGACTAACCTTG
GCTTAACAATTCCCCTGCCCATTTCCTGTCGTCTTTGTCGCACGCTGTGT
AGCTCGATCTAGTTCTGCGTTTCAGGTATTCATAGATGGATGGAGCCGAC
GGCGTGTACCCTTCATCAGAAGATACATTTTTGCTCGTAGACGCTATAAA
TCGGGAGAAAGATTTTCTAATCGAAGCGGTCGCGTGTGGTGGGTTTTGCC
TTGAAATCGGGTACGTTAATACTGTTTCTGCTTCAGCTTATAATTCACTT
CGCCAACACCAGCATTGATTTCTCCCTATGGCATTCATTTAGCTCAAGCA
CATTTCTTCCCTCTGTTTGTAAATGCTAATAATGCCGTTTTGAGTAAATC
GAAATCATTCAACGGAGCACAGGTCTGGTTCCGGACTGGTCACGGAAACC
CTTGCTACTCTAATACCAAAGTCGTTCTGCTTTTCCTCTGACGTAAACAT
TCTTGCAACGGCCAAGACGGAGCTACTCTTGCGCAATAGCAGTCTCAAGA
ACGTCGATTCTATTCTTTGTGATCTCTTCACCGCGTTTCGTCCGTCATTT
CAGTTCGATGTGATAGTGTTCAACCCACCTTACGTCCCCACGGATGATGA
CGAATTACAACGTGCTCTGACAGAGCACGATATCTCTGCGGCGTGGGCAG
GTGGAAAGGATGGTCGTCAAGTAATAGACAGGTTTCTAAAAGCTTTGAAC
AATTTTTTGTGTGAAACGGGCGTCGCATATCTCACAGTGCTTGAATCTAA
CAAAATAACAGAAGTAACGCAAATTGCAGAAGGTCTCGGTTTACGTGCAC
ATCAAGTAATGAAACGAAGAGCTGGTATAGAAACATTGTACATCTTACGG
TTTAGAAAACGAGAGATCAATGACTCCTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1388703..1390082+

>Gchil1643.t1 ID=Gchil1643.t1|Name=Gchil1643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00004403_pilon:1388703..1390082+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCCGTCCTCGCTTCTACCACGCTATAGCTTGATACATCAATTCAT
CGTCAAGCTTGGGTTGCAACTATTTACAACAGCAAAGGGCGGAGCGCATT
TCTCTGACGCTCGATCTAGTTCTGCGTTTCAGGTATTCATAGATGGATGG
AGCCGACGGCCGGTCGCGTGTGGTGGGTTTTGCCTTGAAATCGGGTCTGG
TTCCGGACTGGTCACGGAAACCCTTGCTACTCTAATACCAAAGTCGTTCT
GCTTTTCCTCTGACGTAAACATTCTTGCAACGGCCAAGACGGAGCTACTC
TTGCGCAATAGCAGTCTCAAGAACGTCGATTCTATTCTTTGTGATCTCTT
CACCGCGTTTCGTCCGTCATTTCAGTTCGATGTGATAGTGTTCAACCCAC
CTTACGTCCCCACGGATGATGACGAATTACAACGTGCTCTGACAGAGCAC
GATATCTCTGCGGCGTGGGCAGGTGGAAAGGATGGTCGTCAAGTAATAGA
CAGGTTTCTAAAAGCTTTGAACAATTTTTTGTGTGAAACGGGCGTCGCAT
ATCTCACAGTGCTTGAATCTAACAAAATAACAGAAGTAACGCAAATTGCA
GAAGGTCTCGGTTTACGTGCACATCAAGTAATGAAACGAAGAGCTGGTAT
AGAAACATTGTACATCTTACGGTTTAGAAAACGAGAGATCAATGACTCCT
AA
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