Gchil1641.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1641.t2
Unique Name	Gchil1641.t2
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	361

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1386040..1387122 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD26982
Preferred name	GGPS1
PFAMs	polyprenyl_synt
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00279
KEGG ko	ko:K13789
KEGG Reaction	R01658,R02003,R02061
KEGG Pathway	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG Module	M00364,M00366
Evalue	1.94e-121
EggNOG OGs	COG0142@1\|root,KOG0776@2759\|Eukaryota
EC	2.5.1.1,2.5.1.10,2.5.1.29
Description	isoprenoid biosynthetic process
COG category	H
BiGG Reaction	iRC1080.CRv4_Au5_s12_g2763_t1
BRITE	ko00000,ko00001,ko00002,ko01000,ko01006

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1641	Gchil1641	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1386040..1387122 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1641.t2.start1	Gchil1641.t2.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1386040..1386042 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1641.t2.CDS1	Gchil1641.t2.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1386040..1387122 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1641.t2.exon1	Gchil1641.t2.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1386040..1387122 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1641.t2.stop1	Gchil1641.t2.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1387120..1387122 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1641.t2	Gchil1641.t2	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1386040..1387122 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1386040..1387122+
coding sequence from alignment at tig00004403_pilon:1386040..1387122+

mRNA sequence

>Gchil1641.t2 ID=Gchil1641.t2|Name=Gchil1641.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=361bp
MVAPSFAPSVALRAPHRVERKPRARRAAVATPVAVAQRRVTPPPPPLPSS
SPATTSSQALSESALREYLVANKLRVDNELEACLQLTDSRTETLVNAMRY
SLLAGGKRIRPILAIAAFQMFAGSTADLTPVMPAALAVEMIHTMSLIHDD
LPSMDNDDFRRGKPTNHKVYGEDIAILAGDALLSYAFEYVARNTRSVDPA
RVVEVLALLTNSVGPHGLAGGQVMDIKSEGQSDISIDTLTWIHTHKTAAL
LRVSCACGAILGGASSEDVRRVSEFAVKTGLAFQIADDVLDITQSTEVLG
KTAGKDLATEKATYPRLLGLDGSKKQAQTLIQQGKESLAPYGERAHTLFA
LADFIISRNN*

spliced messenger RNA

>Gchil1641.t2 ID=Gchil1641.t2|Name=Gchil1641.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00004403_pilon:1386040..1387122+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCGCCGTCCTTCGCGCCGTCCGTCGCACTTCGTGCGCCGCATCG
CGTAGAGCGTAAGCCGCGCGCGCGTCGTGCAGCTGTTGCGACACCCGTGg
ccgtcgcgcagcgccgcgtcacgccgccgccaccgcctctgccgtcgtcg
tcgccAGCTACTACCTCGTCGCAAGCGCTGTCTGAGTCCGCGCTGCGCGA
GTATCTTGTTGCGAACAAGCTACGAGTCGACAACGAATTAGAGGCTTGTC
TGCAACTCACTGACAGTCGCACCGAGACGTTGGTCAACGCCATGCGCTAC
TCGCTGTTGGCGGGTGGAAAGCGAATTCGCCCAATTCTGGCCATCGCTGC
CTTCCAGATGTTCGCTGGTTCGACCGCTGATCTCACCCCGGTCATGCCAG
CGGCCCTTGCCGTTGAAATGATTCACACCATGAGCCTCATCCACGACGAC
CTGCCTAGCATGGACAACGACGACTTCCGCCGCGGCAAGCCCACAAACCA
CAAGGTGTACGGCGAGGACATTGCAATTCTGGCTGGCGATGCGCTTCTCT
CTTATGCCTTCGAGTACGTTGCGCGTAACACACGCTCGGTCGATCCGGCA
CGCGTCGTGGAGGTACTCGCCTTGCTCACCAACAGCGTTGGACCGCATGG
GCTGGCTGGTGGGCAGGTCATGGACATAAAGTCAGAGGGCCAATCCGACA
TTTCCATCGACACCCTCACCTGGATTCATACCCACAAGACCGCTGCTCTT
CTGCGCGTTAGCTGTGCATGCGGCGCCATTTTGGGCGGTGCCTCGAGCGA
AGATGTTCGTCGAGTCAGCGAATTCGCCGTCAAGACCGGTCTAGCTTTCC
AAATTGCCGATGATGTGCTGGACATTACACAGAGCACGGAGGTACTAGGC
AAGACCGCTGGCAAGGATCTTGCAACTGAAAAGGCCACATATCCAAGGCT
GTTAGGCTTAGATGGATCTAAAAAGCAAGCGCAAACTCTCATCCAACAGG
GTAAGGAAAGCCTTGCTCCTTACGGGGAGCGCGCTCATACGCTTTTCGCG
CTTGCCGACTTCATCATTTCTCGCAATAACTAG

protein sequence of Gchil1641.t2

>Gchil1641.t2 ID=Gchil1641.t2|Name=Gchil1641.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=361bp
MVAPSFAPSVALRAPHRVERKPRARRAAVATPVAVAQRRVTPPPPPLPSS
SPATTSSQALSESALREYLVANKLRVDNELEACLQLTDSRTETLVNAMRY
SLLAGGKRIRPILAIAAFQMFAGSTADLTPVMPAALAVEMIHTMSLIHDD
LPSMDNDDFRRGKPTNHKVYGEDIAILAGDALLSYAFEYVARNTRSVDPA
RVVEVLALLTNSVGPHGLAGGQVMDIKSEGQSDISIDTLTWIHTHKTAAL
LRVSCACGAILGGASSEDVRRVSEFAVKTGLAFQIADDVLDITQSTEVLG
KTAGKDLATEKATYPRLLGLDGSKKQAQTLIQQGKESLAPYGERAHTLFA
LADFIISRNN*

mRNA from alignment at tig00004403_pilon:1386040..1387122+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1641.t2 ID=Gchil1641.t2|Name=Gchil1641.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00004403_pilon:1386040..1387122+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGCGCCGTCCTTCGCGCCGTCCGTCGCACTTCGTGCGCCGCATCG
CGTAGAGCGTAAGCCGCGCGCGCGTCGTGCAGCTGTTGCGACACCCGTGg
ccgtcgcgcagcgccgcgtcacgccgccgccaccgcctctgccgtcgtcg
tcgccAGCTACTACCTCGTCGCAAGCGCTGTCTGAGTCCGCGCTGCGCGA
GTATCTTGTTGCGAACAAGCTACGAGTCGACAACGAATTAGAGGCTTGTC
TGCAACTCACTGACAGTCGCACCGAGACGTTGGTCAACGCCATGCGCTAC
TCGCTGTTGGCGGGTGGAAAGCGAATTCGCCCAATTCTGGCCATCGCTGC
CTTCCAGATGTTCGCTGGTTCGACCGCTGATCTCACCCCGGTCATGCCAG
CGGCCCTTGCCGTTGAAATGATTCACACCATGAGCCTCATCCACGACGAC
CTGCCTAGCATGGACAACGACGACTTCCGCCGCGGCAAGCCCACAAACCA
CAAGGTGTACGGCGAGGACATTGCAATTCTGGCTGGCGATGCGCTTCTCT
CTTATGCCTTCGAGTACGTTGCGCGTAACACACGCTCGGTCGATCCGGCA
CGCGTCGTGGAGGTACTCGCCTTGCTCACCAACAGCGTTGGACCGCATGG
GCTGGCTGGTGGGCAGGTCATGGACATAAAGTCAGAGGGCCAATCCGACA
TTTCCATCGACACCCTCACCTGGATTCATACCCACAAGACCGCTGCTCTT
CTGCGCGTTAGCTGTGCATGCGGCGCCATTTTGGGCGGTGCCTCGAGCGA
AGATGTTCGTCGAGTCAGCGAATTCGCCGTCAAGACCGGTCTAGCTTTCC
AAATTGCCGATGATGTGCTGGACATTACACAGAGCACGGAGGTACTAGGC
AAGACCGCTGGCAAGGATCTTGCAACTGAAAAGGCCACATATCCAAGGCT
GTTAGGCTTAGATGGATCTAAAAAGCAAGCGCAAACTCTCATCCAACAGG
GTAAGGAAAGCCTTGCTCCTTACGGGGAGCGCGCTCATACGCTTTTCGCG
CTTGCCGACTTCATCATTTCTCGCAATAACTAG

Coding sequence (CDS) from alignment at tig00004403_pilon:1386040..1387122+

>Gchil1641.t2 ID=Gchil1641.t2|Name=Gchil1641.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1083bp|location=Sequence derived from alignment at tig00004403_pilon:1386040..1387122+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGCGCCGTCCTTCGCGCCGTCCGTCGCACTTCGTGCGCCGCATCG
CGTAGAGCGTAAGCCGCGCGCGCGTCGTGCAGCTGTTGCGACACCCGTGg
ccgtcgcgcagcgccgcgtcacgccgccgccaccgcctctgccgtcgtcg
tcgccAGCTACTACCTCGTCGCAAGCGCTGTCTGAGTCCGCGCTGCGCGA
GTATCTTGTTGCGAACAAGCTACGAGTCGACAACGAATTAGAGGCTTGTC
TGCAACTCACTGACAGTCGCACCGAGACGTTGGTCAACGCCATGCGCTAC
TCGCTGTTGGCGGGTGGAAAGCGAATTCGCCCAATTCTGGCCATCGCTGC
CTTCCAGATGTTCGCTGGTTCGACCGCTGATCTCACCCCGGTCATGCCAG
CGGCCCTTGCCGTTGAAATGATTCACACCATGAGCCTCATCCACGACGAC
CTGCCTAGCATGGACAACGACGACTTCCGCCGCGGCAAGCCCACAAACCA
CAAGGTGTACGGCGAGGACATTGCAATTCTGGCTGGCGATGCGCTTCTCT
CTTATGCCTTCGAGTACGTTGCGCGTAACACACGCTCGGTCGATCCGGCA
CGCGTCGTGGAGGTACTCGCCTTGCTCACCAACAGCGTTGGACCGCATGG
GCTGGCTGGTGGGCAGGTCATGGACATAAAGTCAGAGGGCCAATCCGACA
TTTCCATCGACACCCTCACCTGGATTCATACCCACAAGACCGCTGCTCTT
CTGCGCGTTAGCTGTGCATGCGGCGCCATTTTGGGCGGTGCCTCGAGCGA
AGATGTTCGTCGAGTCAGCGAATTCGCCGTCAAGACCGGTCTAGCTTTCC
AAATTGCCGATGATGTGCTGGACATTACACAGAGCACGGAGGTACTAGGC
AAGACCGCTGGCAAGGATCTTGCAACTGAAAAGGCCACATATCCAAGGCT
GTTAGGCTTAGATGGATCTAAAAAGCAAGCGCAAACTCTCATCCAACAGG
GTAAGGAAAGCCTTGCTCCTTACGGGGAGCGCGCTCATACGCTTTTCGCG
CTTGCCGACTTCATCATTTCTCGCAATAACTAG