Gchil1638.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1638.t1
Unique Name	Gchil1638.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	523

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1379065..1380633 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1121380.JNIW01000023_gene185
PFAMs	APH
Max annot lvl	2\|Bacteria
Evalue	1.13e-10
EggNOG OGs	COG3173@1\|root,COG3173@2\|Bacteria
Description	very-long-chain-acyl-CoA dehydrogenase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1638	Gchil1638	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1379065..1380633 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1638.t1.start1	Gchil1638.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1379065..1379067 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1638.t1.CDS1	Gchil1638.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1379065..1380633 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1638.t1.exon1	Gchil1638.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1379065..1380633 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1638.t1.stop1	Gchil1638.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1380631..1380633 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1638.t1	Gchil1638.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1379065..1380633 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1379065..1380633+
coding sequence from alignment at tig00004403_pilon:1379065..1380633+

mRNA sequence

>Gchil1638.t1 ID=Gchil1638.t1|Name=Gchil1638.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=523bp
MDDHNLSLINGEDSHSSSSTPSYVIKKERNRYLIILPSQERTHVLVELLP
DGSIRLPALPACSFYHLRASVRSLEESAESFLGINVRFVRELWATHEQGD
YIIWGEAFETVAVLLFEWAEGENSAENDRAMKWMSKSEVMRANWVETEKQ
LKLDLKEVVSKTMEEISGEVHVRISPWRRLGWLTRMLTWVKAVTKCEIGD
QELYGKFLKIVDHHHSVVWACDMDLSRMKCANVSDGELEHVYIKAALPLF
GEARKTATIAKVLEECQVVPDVIAANEKECILMMRNAGNAQCEEADGKML
VETIVKMQKLAQSRVDELKAGGLEVRDSEWFLCNIHRLLYHESLDRAMKG
SDEGESILRNVRNREDELKEAGKKISSFDVPSTLVHGDLTKGNMGSRKTL
KGKGYQVFDWGMCHIGHPFIDLDVLQDVFQDDATCIKRWRMEYWKYWKSK
VSEEEFFKLLRLVQLLVEAAGLDLFLREAEFLGEGEEVVSERLRHYVEFI
RNTLNNIKDWNEEEARARDSVD*

spliced messenger RNA

>Gchil1638.t1 ID=Gchil1638.t1|Name=Gchil1638.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00004403_pilon:1379065..1380633+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGACCATAATCTAAGTCTCATAAATGGAGAGGACTCTCACTCGTC
AAGCTCTACGCCTTCGTATGTGATCAAGAAGGAGCGTAATCGGTATCTAA
TCATACTGCCCTCACAGGAACGAACTCATGTGCTGGTCGAATTGTTGCCG
GATGGATCCATTCGCCTACCAGCACTGCCCGCATGTTCCTTCTATCATTT
GCGGGCGAGTGTGAGAAGTCTGGAGGAATCAGCTGAATCATTCTTGGGCA
TCAACGTGAGGTTCGTGCGCGAACTGTGGGCTACACATGAACAAGGGGAT
TATATTATATGGGGGGAAGCATTCGAGACTGTTGCCGTGCTGCTGTTTGA
GTGGGCAGAAGGAGAGAATAGTGCGGAAAACGATAGAGCAATGAAGTGGA
TGTCAAAGAGCGAAGTAATGAGAGCTAACTGGGTGGAAACGGAGAAACAG
CTTAAATTGGATCTGAAAGAGGTGGTCTCAAAAACTATGGAGGAGATCAG
TGGAGAGGTGCATGTGCGGATTTCACCCTGGCGACGCTTGGGATGGCTGA
CGAGGATGTTGACTTGGGTGAAAGCGGTTACTAAATGCGAGATTGGTGAT
CAAGAGCTTTACGGCAAGTTTTTGAAGATTGTTGATCATCATCACTCGGT
AGTGTGGGCGTGTGACATGGACCTGTCCCGAATGAAGTGTGCGAATGTAT
CAGACGGCGAACTGGAGCACGTGTACATCAAGGCTGCACTTCCACTTTTT
GGTGAAGCCAGGAAGACTGCGACGATTGCTAAAGTGTTAGAGGAATGCCA
GGTCGTGCCGGATGTTATTGCTGCAAATGAGAAAGAGTGCATACTTATGA
TGCGAAACGCCGGAAATGCGCAATGTGAGGAAGCAGACGGCAAGATGTTG
GTGGAGACTATAGTGAAGATGCAGAAATTAGCTCAAAGTCGAGTAGATGA
ACTCAAGGCTGGGGGGCTGGAAGTTCGAGACAGCGAATGGTTCTTGTGTA
ACATACATCGGTTGTTGTACCATGAAAGCCTGGATAGGGCGATGAAGGGT
AGCGATGAAGGCGAATCAATATTGCGGAATGTTCGAAACCGTGAAGACGA
ATTGAAAGAAGCGGGCAAGAAGATCAGCAGTTTTGATGTGCCAAGCACAC
TGGTGCACGGGGACTTAACTAAGGGGAACATGGGGAGTCGAAAGACGCTC
AAGGGCAAAGGTTATCAGGTGTTTGATTGGGGCATGTGTCATATCGGACA
CCCGTTTATCGACTTGGACGTACTTCAAGATGTGTTTCAAGACGACGCAA
CATGCATAAAACGTTGGCGTATGGAGTACTGGAAATACTGGAAGTCTAAG
GTGAGTGAGGAGGAGTTCTTCAAACTGTTACGGCTTGTTCAATTGTTGGT
GGAGGCGGCTGGGCTGGACCTGTTTCTGAGGGAGGCTGAGTTCCTGGGTG
AGGGAGAGGAAGTTGTGTCGGAGCGTCTACGACACTATGTGGAATTTATT
CGAAACACGTTAAACAACATCAAGGACTGGAACGAGGAAGAAGCAAGGGC
TAGAGACAGCGTCGACTAA

protein sequence of Gchil1638.t1

>Gchil1638.t1 ID=Gchil1638.t1|Name=Gchil1638.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=523bp
MDDHNLSLINGEDSHSSSSTPSYVIKKERNRYLIILPSQERTHVLVELLP
DGSIRLPALPACSFYHLRASVRSLEESAESFLGINVRFVRELWATHEQGD
YIIWGEAFETVAVLLFEWAEGENSAENDRAMKWMSKSEVMRANWVETEKQ
LKLDLKEVVSKTMEEISGEVHVRISPWRRLGWLTRMLTWVKAVTKCEIGD
QELYGKFLKIVDHHHSVVWACDMDLSRMKCANVSDGELEHVYIKAALPLF
GEARKTATIAKVLEECQVVPDVIAANEKECILMMRNAGNAQCEEADGKML
VETIVKMQKLAQSRVDELKAGGLEVRDSEWFLCNIHRLLYHESLDRAMKG
SDEGESILRNVRNREDELKEAGKKISSFDVPSTLVHGDLTKGNMGSRKTL
KGKGYQVFDWGMCHIGHPFIDLDVLQDVFQDDATCIKRWRMEYWKYWKSK
VSEEEFFKLLRLVQLLVEAAGLDLFLREAEFLGEGEEVVSERLRHYVEFI
RNTLNNIKDWNEEEARARDSVD*

mRNA from alignment at tig00004403_pilon:1379065..1380633+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1638.t1 ID=Gchil1638.t1|Name=Gchil1638.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00004403_pilon:1379065..1380633+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGACCATAATCTAAGTCTCATAAATGGAGAGGACTCTCACTCGTC
AAGCTCTACGCCTTCGTATGTGATCAAGAAGGAGCGTAATCGGTATCTAA
TCATACTGCCCTCACAGGAACGAACTCATGTGCTGGTCGAATTGTTGCCG
GATGGATCCATTCGCCTACCAGCACTGCCCGCATGTTCCTTCTATCATTT
GCGGGCGAGTGTGAGAAGTCTGGAGGAATCAGCTGAATCATTCTTGGGCA
TCAACGTGAGGTTCGTGCGCGAACTGTGGGCTACACATGAACAAGGGGAT
TATATTATATGGGGGGAAGCATTCGAGACTGTTGCCGTGCTGCTGTTTGA
GTGGGCAGAAGGAGAGAATAGTGCGGAAAACGATAGAGCAATGAAGTGGA
TGTCAAAGAGCGAAGTAATGAGAGCTAACTGGGTGGAAACGGAGAAACAG
CTTAAATTGGATCTGAAAGAGGTGGTCTCAAAAACTATGGAGGAGATCAG
TGGAGAGGTGCATGTGCGGATTTCACCCTGGCGACGCTTGGGATGGCTGA
CGAGGATGTTGACTTGGGTGAAAGCGGTTACTAAATGCGAGATTGGTGAT
CAAGAGCTTTACGGCAAGTTTTTGAAGATTGTTGATCATCATCACTCGGT
AGTGTGGGCGTGTGACATGGACCTGTCCCGAATGAAGTGTGCGAATGTAT
CAGACGGCGAACTGGAGCACGTGTACATCAAGGCTGCACTTCCACTTTTT
GGTGAAGCCAGGAAGACTGCGACGATTGCTAAAGTGTTAGAGGAATGCCA
GGTCGTGCCGGATGTTATTGCTGCAAATGAGAAAGAGTGCATACTTATGA
TGCGAAACGCCGGAAATGCGCAATGTGAGGAAGCAGACGGCAAGATGTTG
GTGGAGACTATAGTGAAGATGCAGAAATTAGCTCAAAGTCGAGTAGATGA
ACTCAAGGCTGGGGGGCTGGAAGTTCGAGACAGCGAATGGTTCTTGTGTA
ACATACATCGGTTGTTGTACCATGAAAGCCTGGATAGGGCGATGAAGGGT
AGCGATGAAGGCGAATCAATATTGCGGAATGTTCGAAACCGTGAAGACGA
ATTGAAAGAAGCGGGCAAGAAGATCAGCAGTTTTGATGTGCCAAGCACAC
TGGTGCACGGGGACTTAACTAAGGGGAACATGGGGAGTCGAAAGACGCTC
AAGGGCAAAGGTTATCAGGTGTTTGATTGGGGCATGTGTCATATCGGACA
CCCGTTTATCGACTTGGACGTACTTCAAGATGTGTTTCAAGACGACGCAA
CATGCATAAAACGTTGGCGTATGGAGTACTGGAAATACTGGAAGTCTAAG
GTGAGTGAGGAGGAGTTCTTCAAACTGTTACGGCTTGTTCAATTGTTGGT
GGAGGCGGCTGGGCTGGACCTGTTTCTGAGGGAGGCTGAGTTCCTGGGTG
AGGGAGAGGAAGTTGTGTCGGAGCGTCTACGACACTATGTGGAATTTATT
CGAAACACGTTAAACAACATCAAGGACTGGAACGAGGAAGAAGCAAGGGC
TAGAGACAGCGTCGACTAA

Coding sequence (CDS) from alignment at tig00004403_pilon:1379065..1380633+

>Gchil1638.t1 ID=Gchil1638.t1|Name=Gchil1638.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1569bp|location=Sequence derived from alignment at tig00004403_pilon:1379065..1380633+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGACCATAATCTAAGTCTCATAAATGGAGAGGACTCTCACTCGTC
AAGCTCTACGCCTTCGTATGTGATCAAGAAGGAGCGTAATCGGTATCTAA
TCATACTGCCCTCACAGGAACGAACTCATGTGCTGGTCGAATTGTTGCCG
GATGGATCCATTCGCCTACCAGCACTGCCCGCATGTTCCTTCTATCATTT
GCGGGCGAGTGTGAGAAGTCTGGAGGAATCAGCTGAATCATTCTTGGGCA
TCAACGTGAGGTTCGTGCGCGAACTGTGGGCTACACATGAACAAGGGGAT
TATATTATATGGGGGGAAGCATTCGAGACTGTTGCCGTGCTGCTGTTTGA
GTGGGCAGAAGGAGAGAATAGTGCGGAAAACGATAGAGCAATGAAGTGGA
TGTCAAAGAGCGAAGTAATGAGAGCTAACTGGGTGGAAACGGAGAAACAG
CTTAAATTGGATCTGAAAGAGGTGGTCTCAAAAACTATGGAGGAGATCAG
TGGAGAGGTGCATGTGCGGATTTCACCCTGGCGACGCTTGGGATGGCTGA
CGAGGATGTTGACTTGGGTGAAAGCGGTTACTAAATGCGAGATTGGTGAT
CAAGAGCTTTACGGCAAGTTTTTGAAGATTGTTGATCATCATCACTCGGT
AGTGTGGGCGTGTGACATGGACCTGTCCCGAATGAAGTGTGCGAATGTAT
CAGACGGCGAACTGGAGCACGTGTACATCAAGGCTGCACTTCCACTTTTT
GGTGAAGCCAGGAAGACTGCGACGATTGCTAAAGTGTTAGAGGAATGCCA
GGTCGTGCCGGATGTTATTGCTGCAAATGAGAAAGAGTGCATACTTATGA
TGCGAAACGCCGGAAATGCGCAATGTGAGGAAGCAGACGGCAAGATGTTG
GTGGAGACTATAGTGAAGATGCAGAAATTAGCTCAAAGTCGAGTAGATGA
ACTCAAGGCTGGGGGGCTGGAAGTTCGAGACAGCGAATGGTTCTTGTGTA
ACATACATCGGTTGTTGTACCATGAAAGCCTGGATAGGGCGATGAAGGGT
AGCGATGAAGGCGAATCAATATTGCGGAATGTTCGAAACCGTGAAGACGA
ATTGAAAGAAGCGGGCAAGAAGATCAGCAGTTTTGATGTGCCAAGCACAC
TGGTGCACGGGGACTTAACTAAGGGGAACATGGGGAGTCGAAAGACGCTC
AAGGGCAAAGGTTATCAGGTGTTTGATTGGGGCATGTGTCATATCGGACA
CCCGTTTATCGACTTGGACGTACTTCAAGATGTGTTTCAAGACGACGCAA
CATGCATAAAACGTTGGCGTATGGAGTACTGGAAATACTGGAAGTCTAAG
GTGAGTGAGGAGGAGTTCTTCAAACTGTTACGGCTTGTTCAATTGTTGGT
GGAGGCGGCTGGGCTGGACCTGTTTCTGAGGGAGGCTGAGTTCCTGGGTG
AGGGAGAGGAAGTTGTGTCGGAGCGTCTACGACACTATGTGGAATTTATT
CGAAACACGTTAAACAACATCAAGGACTGGAACGAGGAAGAAGCAAGGGC
TAGAGACAGCGTCGACTAA