Gchil1631.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1631.t1
Unique NameGchil1631.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1237428..1238201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX45793
Preferred namePSMA3
PFAMsProteasome,Proteasome_A_N
Max annot lvl2759|Eukaryota
KEGG koko:K01537,ko:K02727,ko:K03868
KEGG TC3.A.3.2
KEGG Pathwayko03050,ko03420,ko04066,ko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04341,ko04350,ko04710,ko05200,ko05211,map03050,map03420,map04066,map04110,map04111,map04114,map04120,map04141,map04310,map04341,map04350,map04710,map05200,map05211
KEGG ModuleM00337,M00340,M00379,M00380,M00381,M00382,M00383,M00384,M00385,M00386,M00387,M00407,M00411
GOsGO:0000003,GO:0000502,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0007088,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009628,GO:0009888,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016579,GO:0019222,GO:0019538,GO:0019773,GO:0019899,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0030071,GO:0030154,GO:0030162,GO:0030163,GO:0030707,GO:0030855,GO:0031090,GO:0031331,GO:0031597,GO:0031625,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0036211,GO:0042175,GO:0042221,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045202,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046686,GO:0048046,GO:0048468,GO:0048477,GO:0048518,GO:0048522,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051246,GO:0051247,GO:0051336,GO:0051603,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060255,GO:0060429,GO:0062033,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0090068,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Evalue6.42e-95
EggNOG OGsCOG0638@1|root,KOG0184@2759|Eukaryota
EC2.3.2.32,3.4.25.1,3.6.3.8
DescriptionThe proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko03400,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1631Gchil1631Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1237428..1238201 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1631.t1.stop1Gchil1631.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1237428..1237430 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1631.t1.CDS1Gchil1631.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1237428..1238201 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1631.t1.exon1Gchil1631.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1237428..1238201 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1631.t1.start1Gchil1631.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1238199..1238201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1631.t1Gchil1631.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1237428..1238201 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1631.t1 ID=Gchil1631.t1|Name=Gchil1631.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=258bp
MASIGTGYDLSSTTFSPDGRVFQIEYAAKAVENSGTCMGIRCKDGVVLAL
EKTIISKMLVPGSLRRAHIVDKHASLVVCGLISDGRVIVDRARKECENYL
DFYGRPIPGAILADRLAHFVHLYTLHWHLRPFGCAILLGVHNGEKEGAQL
YMIEPSGVAYRYYACAYGKGKQAARTELEKLSLNDKEKTPQISCEQAVKD
LARIVVSVHDDSKDKEYEIEMIWVRDGQSAAMVPRDMVQKIHEEAKREAE
ADSDMEE*
back to top

spliced messenger RNA

>Gchil1631.t1 ID=Gchil1631.t1|Name=Gchil1631.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00004403_pilon:1237428..1238201- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCTATCGGCACAGGATACGATCTTTCATCGACAACGTTCTCGCC
TGATGGGCGCGTCTTTCAGATCGAATATGCAGCCAAGGCAGTAGAGAACT
CCGGGACATGCATGGGAATCCGGTGCAAAGACGGCGTCGTTCTAGCGTTG
GAGAAGACGATCATTTCGAAGATGCTCGTGCCGGGCTCTCTGCGTCGCGC
CCACATTGTCGATAAACATGCCTCGCTCGTTGTCTGCGGCTTGATCTCCG
ATGGTCGAGTAATTGTCGACCGTGCACGCAAAGAGTGTGAAAACTATCTT
GACTTTTATGGAAGACCTATCCCCGGGGCTATTCTCGCCGATCGCTTAGC
GCATTTTGTTCATCTCTATACATTACATTGGCATCTTCGTCCTTTCGGGT
GTGCGATTTTGCTGGGAGTTCATAACGGAGAAAAGGAGGGCGCCCAGCTT
TATATGATTGAACCGAGCGGCGTTGCGTATAGGTATTATGCATGCGCCTA
TGGAAAGGGAAAGCAAGCGGCCCGAACAGAACTTGAAAAACTTTCGCTCA
ACGACAAAGAAAAAACGCCGCAGATCTCTTGCGAACAAGCAGTCAAGGAT
TTAGCAAGGATCGTCGTCAGTGTACATGATGACAGTAAGGACAAGGAATA
TGAAATTGAAATGATATGGGTAAGGGATGGTCAGTCCGCAGCTATGGTGC
CCCGGGATATGGTGCAAAAAATTCATGAGGAAGCAAAGCGAGAAGCAGAG
GCTGATTCTGATATGGAAGAATAA
back to top

protein sequence of Gchil1631.t1

>Gchil1631.t1 ID=Gchil1631.t1|Name=Gchil1631.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=258bp
MASIGTGYDLSSTTFSPDGRVFQIEYAAKAVENSGTCMGIRCKDGVVLAL
EKTIISKMLVPGSLRRAHIVDKHASLVVCGLISDGRVIVDRARKECENYL
DFYGRPIPGAILADRLAHFVHLYTLHWHLRPFGCAILLGVHNGEKEGAQL
YMIEPSGVAYRYYACAYGKGKQAARTELEKLSLNDKEKTPQISCEQAVKD
LARIVVSVHDDSKDKEYEIEMIWVRDGQSAAMVPRDMVQKIHEEAKREAE
ADSDMEE*
back to top

mRNA from alignment at tig00004403_pilon:1237428..1238201-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1631.t1 ID=Gchil1631.t1|Name=Gchil1631.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00004403_pilon:1237428..1238201- (Gracilaria chilensis NLEC103_M9 male)
ATGGCATCTATCGGCACAGGATACGATCTTTCATCGACAACGTTCTCGCC
TGATGGGCGCGTCTTTCAGATCGAATATGCAGCCAAGGCAGTAGAGAACT
CCGGGACATGCATGGGAATCCGGTGCAAAGACGGCGTCGTTCTAGCGTTG
GAGAAGACGATCATTTCGAAGATGCTCGTGCCGGGCTCTCTGCGTCGCGC
CCACATTGTCGATAAACATGCCTCGCTCGTTGTCTGCGGCTTGATCTCCG
ATGGTCGAGTAATTGTCGACCGTGCACGCAAAGAGTGTGAAAACTATCTT
GACTTTTATGGAAGACCTATCCCCGGGGCTATTCTCGCCGATCGCTTAGC
GCATTTTGTTCATCTCTATACATTACATTGGCATCTTCGTCCTTTCGGGT
GTGCGATTTTGCTGGGAGTTCATAACGGAGAAAAGGAGGGCGCCCAGCTT
TATATGATTGAACCGAGCGGCGTTGCGTATAGGTATTATGCATGCGCCTA
TGGAAAGGGAAAGCAAGCGGCCCGAACAGAACTTGAAAAACTTTCGCTCA
ACGACAAAGAAAAAACGCCGCAGATCTCTTGCGAACAAGCAGTCAAGGAT
TTAGCAAGGATCGTCGTCAGTGTACATGATGACAGTAAGGACAAGGAATA
TGAAATTGAAATGATATGGGTAAGGGATGGTCAGTCCGCAGCTATGGTGC
CCCGGGATATGGTGCAAAAAATTCATGAGGAAGCAAAGCGAGAAGCAGAG
GCTGATTCTGATATGGAAGAATAA
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:1237428..1238201-

>Gchil1631.t1 ID=Gchil1631.t1|Name=Gchil1631.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=774bp|location=Sequence derived from alignment at tig00004403_pilon:1237428..1238201- (Gracilaria chilensis NLEC103_M9 male)
ATGGCATCTATCGGCACAGGATACGATCTTTCATCGACAACGTTCTCGCC
TGATGGGCGCGTCTTTCAGATCGAATATGCAGCCAAGGCAGTAGAGAACT
CCGGGACATGCATGGGAATCCGGTGCAAAGACGGCGTCGTTCTAGCGTTG
GAGAAGACGATCATTTCGAAGATGCTCGTGCCGGGCTCTCTGCGTCGCGC
CCACATTGTCGATAAACATGCCTCGCTCGTTGTCTGCGGCTTGATCTCCG
ATGGTCGAGTAATTGTCGACCGTGCACGCAAAGAGTGTGAAAACTATCTT
GACTTTTATGGAAGACCTATCCCCGGGGCTATTCTCGCCGATCGCTTAGC
GCATTTTGTTCATCTCTATACATTACATTGGCATCTTCGTCCTTTCGGGT
GTGCGATTTTGCTGGGAGTTCATAACGGAGAAAAGGAGGGCGCCCAGCTT
TATATGATTGAACCGAGCGGCGTTGCGTATAGGTATTATGCATGCGCCTA
TGGAAAGGGAAAGCAAGCGGCCCGAACAGAACTTGAAAAACTTTCGCTCA
ACGACAAAGAAAAAACGCCGCAGATCTCTTGCGAACAAGCAGTCAAGGAT
TTAGCAAGGATCGTCGTCAGTGTACATGATGACAGTAAGGACAAGGAATA
TGAAATTGAAATGATATGGGTAAGGGATGGTCAGTCCGCAGCTATGGTGC
CCCGGGATATGGTGCAAAAAATTCATGAGGAAGCAAAGCGAGAAGCAGAG
GCTGATTCTGATATGGAAGAATAA
back to top