Gchil1629.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1629.t1
Unique Name	Gchil1629.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	743

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1232900..1235128 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3067.XP_002957686.1
PFAMs	Kinesin
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K10395
Evalue	2.8e-78
EggNOG OGs	COG5059@1\|root,KOG0244@2759\|Eukaryota,37KZU@33090\|Viridiplantae,34JGS@3041\|Chlorophyta
Description	Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family
COG category	Z
BRITE	ko00000,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1629	Gchil1629	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1232900..1235128 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1629.t1.start1	Gchil1629.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1232900..1232902 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1629.t1.CDS1	Gchil1629.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1232900..1235128 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1629.t1.exon1	Gchil1629.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1232900..1235128 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1629.t1.stop1	Gchil1629.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1235126..1235128 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1629.t1	Gchil1629.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1232900..1235128 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1232900..1235128+
coding sequence from alignment at tig00004403_pilon:1232900..1235128+

mRNA sequence

>Gchil1629.t1 ID=Gchil1629.t1|Name=Gchil1629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=743bp
MALVAANHARPPPARTEAVSVVINARPLLPFEVADNAACALFHRTSPPCV
SLRRPPAADVHFPQFDAAYFATNNCKPDALYLQHVRPKLDALFSGVNVTV
FAYGQTSAGKSFTMSHLTDCVARDVFQLKRAAERARRTVVVRVGFVEIYK
ERIRDLVDANSRPAVPVQVRERRVKAAKHVFLDGARERCVQDENALVSII
RDGNVVRRTAATGMNASSSRSHSVITITVQQESEGNECLFSKLHLVDLAG
SERVKRTAAQGTRFEEGVQINKGLFALAKVISALADKVGHVPYRDSNLTR
LLQDSLGGNAKTLLIACVSPADSSREETLGTLRYAARAKRIQNKPVVNTE
PDSVEISDLRAALARARSQIASLVAENERLRGRGKRIASPRSPLPSTAGV
LHHAQAGCGVSPKRVEATGGRDEGLVNGLRERITKLENVLEAAGIVVEPA
ARSPLRKIRHFALREDDSRAPKRRPRVLRDSRSKACSFDAHGSEKRQITI
GRTQSEKTLPAARRNFGNRPFPIAVEQDVVESNGYVDELENKVVNVLSAH
RMDEMKRTFAERLQQAEEDKTAIDSARLKLVKRLSSTQKKHEREIEEQKS
AHQAQMADIRSRLADVKRLEAEIVRMSKMRDGSDAARKKLIAKVESAEKS
RDEAISRLTDVVGRSEIIKRNLVKENKELSKRERMIKVELNRRKICTERR
QAVINRLRLENETLRIQLRDIGRQQVRRANSGITSTSTRTEC*

spliced messenger RNA

>Gchil1629.t1 ID=Gchil1629.t1|Name=Gchil1629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2229bp|location=Sequence derived from alignment at tig00004403_pilon:1232900..1235128+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTTGTCGCCGCCAACCACGCGCGCCCCCCGCCCGCGCGTACCGA
GGCCGTCAGCGTCGTCATCAACGCCAGGCCGTTGCTGCCGTTTGAAGTCG
CTGATAATGCCGCCTGCGCCCTGTTTCACCGCACCTCCCCGCCGTGCGTC
TCGCTCAGAAGGCCGCCTGCCGCCGACGTGCACTTCCCCCAATTCGACGC
CGCCTACTTTGCCACCAACAACTGCAAGCCCGATGCGCTCTACTTGCAAC
ACGTGCGCCCAAAGTTGGACGCCCTCTTCTCCGGCGTTAATGTCACCGTC
TTCGCCTACGGCCAGACTAGTGCGGGCAAGAGTTTCACCATGTCTCACCT
TACCGATTGCGTTGCACGAGACGTCTTCCAGCTCAAGAGAGCTGCTGAAA
GGGCGCGCCGAACCGTGGTTGTGCGTGTCGGATTCGTCGAGATTTACAAG
GAGCGAATTAGAGATCTCGTCGACGCCAACTCCAGGCCGGCCGTTCCGGT
GCAGGTCCGCGAGAGACGCGTCAAGGCCGCTAAGCATGTCTTCTTGGATG
GCGCCCGCGAGCGATGCGTTCAGGATGAAAATGCACTTGTTTCAATCATC
CGTGATGGTAACGTAGTCCGCCGTACCGCTGCCACCGGCATGAATGCCTC
CTCGTCCAGGAGTCACTCTGTCATCACCATTACTGTCCAGCAGGAGAGCG
AGGGCAATGAATGCTTGTTTTCAAAGTTGCATCTTGTTGATTTGGCCGGC
AGCGAACGCGTCAAACGAACTGCTGCACAAGGCACTAGGTTTGAGGAAGG
CGTCCAGATAAATAAGGGTCTATTCGCGCTCGCAAAAGTCATATCCGCAT
TGGCTGATAAGGTTGGTCATGTCCCATATCGCGATAGTAATCTTACCCGA
TTATTACAAGACAGTCTCGGCGGAAACGCAAAGACGCTATTGATTGCATG
TGTGTCACCGGCCGATTCCAGTCGCGAAGAAACTCTGGGTACGCTTCGAT
ATGCTGCGCGCGCAAAACGTATTCAGAACAAACCTGTGGTGAATACTGAG
CCCGATAGCGTCGAGATTTCTGATTTGCGTGCAGCGCTTGCGAGGGCACG
CTCTCAGATTGCTTCGCTTGTGGCGGAGAATGAGAGACTAAGAGGAAGGG
GCAAACGAATCGCCTCGCCGCGCTCACCGCTCCCCAGTACCGCTGGCGTG
CTTCATCATGCTCAGGCCGGCTGCGGCGTAAGTCCGAAGCGAGTGGAAGC
CACTGGAGGGAGAGATGAAGGGCTGGTGAATGGCTTGAGGGAGCGGATTA
CCAAACTTGAGAATGTGCTGGAAGCGGCGGGCATTGTTGTTGAACCAGCT
GCACGAAGTCCATTGAGAAAGATTCGCCATTTCGCCTTGAGGGAGGATGA
TAGCAGAGCGCCGAAGAGACGCCCACGTGTTCTAAGAGATTCCAGATCCA
AGGCATGTAGTTTTGATGCACACGGCAGTGAAAAGAGGCAGATCACTATT
GGGCGAACTCAGTCGGAGAAGACGTTGCCCGCCGCAAGACGAAATTTCGG
CAACCGTCCCTTTCCCATTGCCGTGGAACAGGACGTTGTGGAGTCCAATG
GATATGTGGATGAACTTGAGAACAAGGTTGTGAATGTATTGTCGGCCCAT
CGAATGGATGAGATGAAACGCACTTTCGCGGAACGATTGCAACAGGCTGA
GGAGGATAAGACTGCTATTGACAGTGCGAGGTTGAAACTTGTCAAACGAC
TGTCATCCACTCAAAAGAAGCATGAGCGAGAGATTGAAGAACAGAAGAGT
GCTCATCAGGCGCAGATGGCTGACATCAGGTCTCGTTTGGCTGACGTGAA
AAGGTTGGAAGCCGAAATCGTCCGAATGAGCAAGATGCGAGATGGAAGCG
ATGCAGCGCGAAAGAAACTTATTGCAAAAGTTGAGTCGGCCGAGAAGTCT
CGAGATGAGGCCATATCAAGATTGACGGACGTTGTTGGTCGCTCGGAAAT
AATCAAGAGAAACTTGGTGAAGGAAAACAAGGAATTGTCAAAGAGGGAAC
GTATGATCAAGGTGGAATTGAATCGCCGCAAGATATGTACAGAAAGGCGA
CAAGCTGTGATTAACCGCTTGAGACTGGAGAATGAGACATTGAGAATTCA
GTTGCGTGATATTGGACGACAACAAGTACGACGTGCTAATTCGGGAATCA
CTTCTACTAGCACGCGTACCGAGTGCTGA

protein sequence of Gchil1629.t1

>Gchil1629.t1 ID=Gchil1629.t1|Name=Gchil1629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=743bp
MALVAANHARPPPARTEAVSVVINARPLLPFEVADNAACALFHRTSPPCV
SLRRPPAADVHFPQFDAAYFATNNCKPDALYLQHVRPKLDALFSGVNVTV
FAYGQTSAGKSFTMSHLTDCVARDVFQLKRAAERARRTVVVRVGFVEIYK
ERIRDLVDANSRPAVPVQVRERRVKAAKHVFLDGARERCVQDENALVSII
RDGNVVRRTAATGMNASSSRSHSVITITVQQESEGNECLFSKLHLVDLAG
SERVKRTAAQGTRFEEGVQINKGLFALAKVISALADKVGHVPYRDSNLTR
LLQDSLGGNAKTLLIACVSPADSSREETLGTLRYAARAKRIQNKPVVNTE
PDSVEISDLRAALARARSQIASLVAENERLRGRGKRIASPRSPLPSTAGV
LHHAQAGCGVSPKRVEATGGRDEGLVNGLRERITKLENVLEAAGIVVEPA
ARSPLRKIRHFALREDDSRAPKRRPRVLRDSRSKACSFDAHGSEKRQITI
GRTQSEKTLPAARRNFGNRPFPIAVEQDVVESNGYVDELENKVVNVLSAH
RMDEMKRTFAERLQQAEEDKTAIDSARLKLVKRLSSTQKKHEREIEEQKS
AHQAQMADIRSRLADVKRLEAEIVRMSKMRDGSDAARKKLIAKVESAEKS
RDEAISRLTDVVGRSEIIKRNLVKENKELSKRERMIKVELNRRKICTERR
QAVINRLRLENETLRIQLRDIGRQQVRRANSGITSTSTRTEC*

mRNA from alignment at tig00004403_pilon:1232900..1235128+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1629.t1 ID=Gchil1629.t1|Name=Gchil1629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2229bp|location=Sequence derived from alignment at tig00004403_pilon:1232900..1235128+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCTTGTCGCCGCCAACCACGCGCGCCCCCCGCCCGCGCGTACCGA
GGCCGTCAGCGTCGTCATCAACGCCAGGCCGTTGCTGCCGTTTGAAGTCG
CTGATAATGCCGCCTGCGCCCTGTTTCACCGCACCTCCCCGCCGTGCGTC
TCGCTCAGAAGGCCGCCTGCCGCCGACGTGCACTTCCCCCAATTCGACGC
CGCCTACTTTGCCACCAACAACTGCAAGCCCGATGCGCTCTACTTGCAAC
ACGTGCGCCCAAAGTTGGACGCCCTCTTCTCCGGCGTTAATGTCACCGTC
TTCGCCTACGGCCAGACTAGTGCGGGCAAGAGTTTCACCATGTCTCACCT
TACCGATTGCGTTGCACGAGACGTCTTCCAGCTCAAGAGAGCTGCTGAAA
GGGCGCGCCGAACCGTGGTTGTGCGTGTCGGATTCGTCGAGATTTACAAG
GAGCGAATTAGAGATCTCGTCGACGCCAACTCCAGGCCGGCCGTTCCGGT
GCAGGTCCGCGAGAGACGCGTCAAGGCCGCTAAGCATGTCTTCTTGGATG
GCGCCCGCGAGCGATGCGTTCAGGATGAAAATGCACTTGTTTCAATCATC
CGTGATGGTAACGTAGTCCGCCGTACCGCTGCCACCGGCATGAATGCCTC
CTCGTCCAGGAGTCACTCTGTCATCACCATTACTGTCCAGCAGGAGAGCG
AGGGCAATGAATGCTTGTTTTCAAAGTTGCATCTTGTTGATTTGGCCGGC
AGCGAACGCGTCAAACGAACTGCTGCACAAGGCACTAGGTTTGAGGAAGG
CGTCCAGATAAATAAGGGTCTATTCGCGCTCGCAAAAGTCATATCCGCAT
TGGCTGATAAGGTTGGTCATGTCCCATATCGCGATAGTAATCTTACCCGA
TTATTACAAGACAGTCTCGGCGGAAACGCAAAGACGCTATTGATTGCATG
TGTGTCACCGGCCGATTCCAGTCGCGAAGAAACTCTGGGTACGCTTCGAT
ATGCTGCGCGCGCAAAACGTATTCAGAACAAACCTGTGGTGAATACTGAG
CCCGATAGCGTCGAGATTTCTGATTTGCGTGCAGCGCTTGCGAGGGCACG
CTCTCAGATTGCTTCGCTTGTGGCGGAGAATGAGAGACTAAGAGGAAGGG
GCAAACGAATCGCCTCGCCGCGCTCACCGCTCCCCAGTACCGCTGGCGTG
CTTCATCATGCTCAGGCCGGCTGCGGCGTAAGTCCGAAGCGAGTGGAAGC
CACTGGAGGGAGAGATGAAGGGCTGGTGAATGGCTTGAGGGAGCGGATTA
CCAAACTTGAGAATGTGCTGGAAGCGGCGGGCATTGTTGTTGAACCAGCT
GCACGAAGTCCATTGAGAAAGATTCGCCATTTCGCCTTGAGGGAGGATGA
TAGCAGAGCGCCGAAGAGACGCCCACGTGTTCTAAGAGATTCCAGATCCA
AGGCATGTAGTTTTGATGCACACGGCAGTGAAAAGAGGCAGATCACTATT
GGGCGAACTCAGTCGGAGAAGACGTTGCCCGCCGCAAGACGAAATTTCGG
CAACCGTCCCTTTCCCATTGCCGTGGAACAGGACGTTGTGGAGTCCAATG
GATATGTGGATGAACTTGAGAACAAGGTTGTGAATGTATTGTCGGCCCAT
CGAATGGATGAGATGAAACGCACTTTCGCGGAACGATTGCAACAGGCTGA
GGAGGATAAGACTGCTATTGACAGTGCGAGGTTGAAACTTGTCAAACGAC
TGTCATCCACTCAAAAGAAGCATGAGCGAGAGATTGAAGAACAGAAGAGT
GCTCATCAGGCGCAGATGGCTGACATCAGGTCTCGTTTGGCTGACGTGAA
AAGGTTGGAAGCCGAAATCGTCCGAATGAGCAAGATGCGAGATGGAAGCG
ATGCAGCGCGAAAGAAACTTATTGCAAAAGTTGAGTCGGCCGAGAAGTCT
CGAGATGAGGCCATATCAAGATTGACGGACGTTGTTGGTCGCTCGGAAAT
AATCAAGAGAAACTTGGTGAAGGAAAACAAGGAATTGTCAAAGAGGGAAC
GTATGATCAAGGTGGAATTGAATCGCCGCAAGATATGTACAGAAAGGCGA
CAAGCTGTGATTAACCGCTTGAGACTGGAGAATGAGACATTGAGAATTCA
GTTGCGTGATATTGGACGACAACAAGTACGACGTGCTAATTCGGGAATCA
CTTCTACTAGCACGCGTACCGAGTGCTGA

Coding sequence (CDS) from alignment at tig00004403_pilon:1232900..1235128+

>Gchil1629.t1 ID=Gchil1629.t1|Name=Gchil1629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2229bp|location=Sequence derived from alignment at tig00004403_pilon:1232900..1235128+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCTTGTCGCCGCCAACCACGCGCGCCCCCCGCCCGCGCGTACCGA
GGCCGTCAGCGTCGTCATCAACGCCAGGCCGTTGCTGCCGTTTGAAGTCG
CTGATAATGCCGCCTGCGCCCTGTTTCACCGCACCTCCCCGCCGTGCGTC
TCGCTCAGAAGGCCGCCTGCCGCCGACGTGCACTTCCCCCAATTCGACGC
CGCCTACTTTGCCACCAACAACTGCAAGCCCGATGCGCTCTACTTGCAAC
ACGTGCGCCCAAAGTTGGACGCCCTCTTCTCCGGCGTTAATGTCACCGTC
TTCGCCTACGGCCAGACTAGTGCGGGCAAGAGTTTCACCATGTCTCACCT
TACCGATTGCGTTGCACGAGACGTCTTCCAGCTCAAGAGAGCTGCTGAAA
GGGCGCGCCGAACCGTGGTTGTGCGTGTCGGATTCGTCGAGATTTACAAG
GAGCGAATTAGAGATCTCGTCGACGCCAACTCCAGGCCGGCCGTTCCGGT
GCAGGTCCGCGAGAGACGCGTCAAGGCCGCTAAGCATGTCTTCTTGGATG
GCGCCCGCGAGCGATGCGTTCAGGATGAAAATGCACTTGTTTCAATCATC
CGTGATGGTAACGTAGTCCGCCGTACCGCTGCCACCGGCATGAATGCCTC
CTCGTCCAGGAGTCACTCTGTCATCACCATTACTGTCCAGCAGGAGAGCG
AGGGCAATGAATGCTTGTTTTCAAAGTTGCATCTTGTTGATTTGGCCGGC
AGCGAACGCGTCAAACGAACTGCTGCACAAGGCACTAGGTTTGAGGAAGG
CGTCCAGATAAATAAGGGTCTATTCGCGCTCGCAAAAGTCATATCCGCAT
TGGCTGATAAGGTTGGTCATGTCCCATATCGCGATAGTAATCTTACCCGA
TTATTACAAGACAGTCTCGGCGGAAACGCAAAGACGCTATTGATTGCATG
TGTGTCACCGGCCGATTCCAGTCGCGAAGAAACTCTGGGTACGCTTCGAT
ATGCTGCGCGCGCAAAACGTATTCAGAACAAACCTGTGGTGAATACTGAG
CCCGATAGCGTCGAGATTTCTGATTTGCGTGCAGCGCTTGCGAGGGCACG
CTCTCAGATTGCTTCGCTTGTGGCGGAGAATGAGAGACTAAGAGGAAGGG
GCAAACGAATCGCCTCGCCGCGCTCACCGCTCCCCAGTACCGCTGGCGTG
CTTCATCATGCTCAGGCCGGCTGCGGCGTAAGTCCGAAGCGAGTGGAAGC
CACTGGAGGGAGAGATGAAGGGCTGGTGAATGGCTTGAGGGAGCGGATTA
CCAAACTTGAGAATGTGCTGGAAGCGGCGGGCATTGTTGTTGAACCAGCT
GCACGAAGTCCATTGAGAAAGATTCGCCATTTCGCCTTGAGGGAGGATGA
TAGCAGAGCGCCGAAGAGACGCCCACGTGTTCTAAGAGATTCCAGATCCA
AGGCATGTAGTTTTGATGCACACGGCAGTGAAAAGAGGCAGATCACTATT
GGGCGAACTCAGTCGGAGAAGACGTTGCCCGCCGCAAGACGAAATTTCGG
CAACCGTCCCTTTCCCATTGCCGTGGAACAGGACGTTGTGGAGTCCAATG
GATATGTGGATGAACTTGAGAACAAGGTTGTGAATGTATTGTCGGCCCAT
CGAATGGATGAGATGAAACGCACTTTCGCGGAACGATTGCAACAGGCTGA
GGAGGATAAGACTGCTATTGACAGTGCGAGGTTGAAACTTGTCAAACGAC
TGTCATCCACTCAAAAGAAGCATGAGCGAGAGATTGAAGAACAGAAGAGT
GCTCATCAGGCGCAGATGGCTGACATCAGGTCTCGTTTGGCTGACGTGAA
AAGGTTGGAAGCCGAAATCGTCCGAATGAGCAAGATGCGAGATGGAAGCG
ATGCAGCGCGAAAGAAACTTATTGCAAAAGTTGAGTCGGCCGAGAAGTCT
CGAGATGAGGCCATATCAAGATTGACGGACGTTGTTGGTCGCTCGGAAAT
AATCAAGAGAAACTTGGTGAAGGAAAACAAGGAATTGTCAAAGAGGGAAC
GTATGATCAAGGTGGAATTGAATCGCCGCAAGATATGTACAGAAAGGCGA
CAAGCTGTGATTAACCGCTTGAGACTGGAGAATGAGACATTGAGAATTCA
GTTGCGTGATATTGGACGACAACAAGTACGACGTGCTAATTCGGGAATCA
CTTCTACTAGCACGCGTACCGAGTGCTGA