Gchil1628.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1628.t1
Unique Name	Gchil1628.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	468

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1231176..1232579 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	314271.RB2654_08177
PFAMs	Glyco_transf_7C
Max annot lvl	28211\|Alphaproteobacteria
Evalue	9.96e-25
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria,1MZBS@1224\|Proteobacteria,2UEUD@28211\|Alphaproteobacteria
Description	N-terminal domain of galactosyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1628	Gchil1628	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1231176..1232579 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1628.t1.start1	Gchil1628.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1231176..1231178 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1628.t1.CDS1	Gchil1628.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1231176..1232579 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1628.t1.exon1	Gchil1628.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1231176..1232579 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1628.t1.stop1	Gchil1628.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1232577..1232579 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1628.t1	Gchil1628.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1231176..1232579 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1231176..1232579+
coding sequence from alignment at tig00004403_pilon:1231176..1232579+

mRNA sequence

>Gchil1628.t1 ID=Gchil1628.t1|Name=Gchil1628.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=468bp
MSVAGFDERTRSEKAAMAYISQQFGTMGVAERFLQSKHHTSESDVQEWQE
QLLLPFAVPWKVQNASRYEVKQHKELRIVKQAKLSEYSLDDGVVQDANQQ
AVFTVLHDTYDVPWLLLVSMTAQQRAWLYNGLKTKYKSIMVIHVAHGLGN
RLRALTGAKSFADGTWRMPIVVWERDAHCGALFEELFKVDDELVVLNGMD
VRWPFEEERRSDGAWMQWWLYNYMSAEGGVKDEPLKDGAQHHVYYRGAYV
PKVKHEDLLKNMNAVLRRLRPVSQVMDRVEEISERLKTSIGVHIRHSDPR
NELEGLSGRQLYGESETEVIRYWRSVSEAKSFGKEIQRIWEGAGTSGSEV
FVATDCRKCREELGDILGESVWWMEGDAGGCEGGGERSAECVAWATAELW
ALSRCERVLGSMWSSFSEVAGRLAGGVRYAGADFGRVGTEEWAPAVRAVA
DRVWTKHDDKRRREDGV*

spliced messenger RNA

>Gchil1628.t1 ID=Gchil1628.t1|Name=Gchil1628.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00004403_pilon:1231176..1232579+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGTCGCAGGGTTCGATGAACGTACCAGGAGTGAAAAAGCGGCTAT
GGCATACATATCACAGCAGTTTGGCACCATGGGCGTTGCAGAACGTTTTC
TACAAAGCAAGCACCATACATCCGAAAGTGATGTACAAGAATGGCAAGAA
CAGCTGTTGCTGCCTTTCGCCGTACCTTGGAAGGTACAAAATGCATCGCG
ATACGAAGTGAAGCAGCACAAAGAGCTGCGGATTGTGAAGCAAGCTAAAC
TATCGGAATACTCGCTAGATGATGGCGTCGTACAGGATGCGAATCAACAA
GCTGTGTTTACGGTTCTGCACGATACGTATGACGTGCCTTGGTTGCTGCT
TGTTAGCATGACGGCACAGCAACGGGCATGGCTTTACAATGGACTGAAAA
CAAAATACAAATCGATAATGGTTATTCACGTGGCACATGGGCTGGGAAAT
CGTCTTCGGGCGTTGACAGGAGCGAAATCATTTGCAGACGGCACATGGCG
CATGCCGATAGTGGTGTGGGAGCGAGATGCACATTGCGGAGCTTTGTTTG
AGGAGCTTTTCAAAGTGGACGACGAACTGGTGGTACTAAACGGAATGGAT
GTCAGATGGCCGTTTGAAGAAGAACGACGATCAGACGGGGCTTGGATGCA
ATGGTGGTTGTACAACTACATGAGTGCGGAAGGTGGTGTGAAAGATGAGC
CGTTGAAAGATGGGGCACAGCATCATGTGTACTACCGCGGGGCGTATGTT
CCTAAAGTGAAACATGAGGACTTGCTGAAGAACATGAACGCGGTTCTACG
GAGATTGCGACCTGTGTCGCAGGTGATGGACAGGGTGGAGGAGATTTCGG
AAAGACTGAAGACATCGATAGGAGTTCACATTCGACACAGCGATCCGCGA
AACGAATTGGAAGGGTTGAGTGGCAGGCAGCTGTACGGGGAATCCGAAAC
AGAAGTGATTCGGTACTGGCGCTCTGTGAGCGAGGCGAAGAGCTTCGGAA
AGGAAATCCAGCGCATTTGGGAGGGGGCAGGAACAAGCGGGTCGGAGGTG
TTCGTGGCGACGGACTGTCGGAAATGCAGGGAAGAGCTGGGCGACATCTT
GGGGGAGTCGGTATGGTGGATGGAAGGGGACGCGGGCGGATGCGAGGGTG
GTGGTGAGCGCAGCGCGGAATGCGTGGCGTGGGCGACAGCGGAGCTGTGG
GCGCTGAGCCGATGCGAGCGGGTGCTGGGCAGTATGTGGAGCAGCTTCTC
GGAGGTGGCGGGGCGACTGGCAGGTGGCGTGCGCTACGCGGGCGCGGACT
TCGGGCGCGTGGGCACGGAGGAGTGGGCGCCGGCGGTGCGCGCCGTGGCC
GACAGAGTGTGGACGAAGCACGACGACAAACGACGGCGTGAGGACGGGGT
TTGA

protein sequence of Gchil1628.t1

>Gchil1628.t1 ID=Gchil1628.t1|Name=Gchil1628.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=468bp
MSVAGFDERTRSEKAAMAYISQQFGTMGVAERFLQSKHHTSESDVQEWQE
QLLLPFAVPWKVQNASRYEVKQHKELRIVKQAKLSEYSLDDGVVQDANQQ
AVFTVLHDTYDVPWLLLVSMTAQQRAWLYNGLKTKYKSIMVIHVAHGLGN
RLRALTGAKSFADGTWRMPIVVWERDAHCGALFEELFKVDDELVVLNGMD
VRWPFEEERRSDGAWMQWWLYNYMSAEGGVKDEPLKDGAQHHVYYRGAYV
PKVKHEDLLKNMNAVLRRLRPVSQVMDRVEEISERLKTSIGVHIRHSDPR
NELEGLSGRQLYGESETEVIRYWRSVSEAKSFGKEIQRIWEGAGTSGSEV
FVATDCRKCREELGDILGESVWWMEGDAGGCEGGGERSAECVAWATAELW
ALSRCERVLGSMWSSFSEVAGRLAGGVRYAGADFGRVGTEEWAPAVRAVA
DRVWTKHDDKRRREDGV*

mRNA from alignment at tig00004403_pilon:1231176..1232579+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1628.t1 ID=Gchil1628.t1|Name=Gchil1628.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00004403_pilon:1231176..1232579+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGTCGCAGGGTTCGATGAACGTACCAGGAGTGAAAAAGCGGCTAT
GGCATACATATCACAGCAGTTTGGCACCATGGGCGTTGCAGAACGTTTTC
TACAAAGCAAGCACCATACATCCGAAAGTGATGTACAAGAATGGCAAGAA
CAGCTGTTGCTGCCTTTCGCCGTACCTTGGAAGGTACAAAATGCATCGCG
ATACGAAGTGAAGCAGCACAAAGAGCTGCGGATTGTGAAGCAAGCTAAAC
TATCGGAATACTCGCTAGATGATGGCGTCGTACAGGATGCGAATCAACAA
GCTGTGTTTACGGTTCTGCACGATACGTATGACGTGCCTTGGTTGCTGCT
TGTTAGCATGACGGCACAGCAACGGGCATGGCTTTACAATGGACTGAAAA
CAAAATACAAATCGATAATGGTTATTCACGTGGCACATGGGCTGGGAAAT
CGTCTTCGGGCGTTGACAGGAGCGAAATCATTTGCAGACGGCACATGGCG
CATGCCGATAGTGGTGTGGGAGCGAGATGCACATTGCGGAGCTTTGTTTG
AGGAGCTTTTCAAAGTGGACGACGAACTGGTGGTACTAAACGGAATGGAT
GTCAGATGGCCGTTTGAAGAAGAACGACGATCAGACGGGGCTTGGATGCA
ATGGTGGTTGTACAACTACATGAGTGCGGAAGGTGGTGTGAAAGATGAGC
CGTTGAAAGATGGGGCACAGCATCATGTGTACTACCGCGGGGCGTATGTT
CCTAAAGTGAAACATGAGGACTTGCTGAAGAACATGAACGCGGTTCTACG
GAGATTGCGACCTGTGTCGCAGGTGATGGACAGGGTGGAGGAGATTTCGG
AAAGACTGAAGACATCGATAGGAGTTCACATTCGACACAGCGATCCGCGA
AACGAATTGGAAGGGTTGAGTGGCAGGCAGCTGTACGGGGAATCCGAAAC
AGAAGTGATTCGGTACTGGCGCTCTGTGAGCGAGGCGAAGAGCTTCGGAA
AGGAAATCCAGCGCATTTGGGAGGGGGCAGGAACAAGCGGGTCGGAGGTG
TTCGTGGCGACGGACTGTCGGAAATGCAGGGAAGAGCTGGGCGACATCTT
GGGGGAGTCGGTATGGTGGATGGAAGGGGACGCGGGCGGATGCGAGGGTG
GTGGTGAGCGCAGCGCGGAATGCGTGGCGTGGGCGACAGCGGAGCTGTGG
GCGCTGAGCCGATGCGAGCGGGTGCTGGGCAGTATGTGGAGCAGCTTCTC
GGAGGTGGCGGGGCGACTGGCAGGTGGCGTGCGCTACGCGGGCGCGGACT
TCGGGCGCGTGGGCACGGAGGAGTGGGCGCCGGCGGTGCGCGCCGTGGCC
GACAGAGTGTGGACGAAGCACGACGACAAACGACGGCGTGAGGACGGGGT
TTGA

Coding sequence (CDS) from alignment at tig00004403_pilon:1231176..1232579+

>Gchil1628.t1 ID=Gchil1628.t1|Name=Gchil1628.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1404bp|location=Sequence derived from alignment at tig00004403_pilon:1231176..1232579+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGTCGCAGGGTTCGATGAACGTACCAGGAGTGAAAAAGCGGCTAT
GGCATACATATCACAGCAGTTTGGCACCATGGGCGTTGCAGAACGTTTTC
TACAAAGCAAGCACCATACATCCGAAAGTGATGTACAAGAATGGCAAGAA
CAGCTGTTGCTGCCTTTCGCCGTACCTTGGAAGGTACAAAATGCATCGCG
ATACGAAGTGAAGCAGCACAAAGAGCTGCGGATTGTGAAGCAAGCTAAAC
TATCGGAATACTCGCTAGATGATGGCGTCGTACAGGATGCGAATCAACAA
GCTGTGTTTACGGTTCTGCACGATACGTATGACGTGCCTTGGTTGCTGCT
TGTTAGCATGACGGCACAGCAACGGGCATGGCTTTACAATGGACTGAAAA
CAAAATACAAATCGATAATGGTTATTCACGTGGCACATGGGCTGGGAAAT
CGTCTTCGGGCGTTGACAGGAGCGAAATCATTTGCAGACGGCACATGGCG
CATGCCGATAGTGGTGTGGGAGCGAGATGCACATTGCGGAGCTTTGTTTG
AGGAGCTTTTCAAAGTGGACGACGAACTGGTGGTACTAAACGGAATGGAT
GTCAGATGGCCGTTTGAAGAAGAACGACGATCAGACGGGGCTTGGATGCA
ATGGTGGTTGTACAACTACATGAGTGCGGAAGGTGGTGTGAAAGATGAGC
CGTTGAAAGATGGGGCACAGCATCATGTGTACTACCGCGGGGCGTATGTT
CCTAAAGTGAAACATGAGGACTTGCTGAAGAACATGAACGCGGTTCTACG
GAGATTGCGACCTGTGTCGCAGGTGATGGACAGGGTGGAGGAGATTTCGG
AAAGACTGAAGACATCGATAGGAGTTCACATTCGACACAGCGATCCGCGA
AACGAATTGGAAGGGTTGAGTGGCAGGCAGCTGTACGGGGAATCCGAAAC
AGAAGTGATTCGGTACTGGCGCTCTGTGAGCGAGGCGAAGAGCTTCGGAA
AGGAAATCCAGCGCATTTGGGAGGGGGCAGGAACAAGCGGGTCGGAGGTG
TTCGTGGCGACGGACTGTCGGAAATGCAGGGAAGAGCTGGGCGACATCTT
GGGGGAGTCGGTATGGTGGATGGAAGGGGACGCGGGCGGATGCGAGGGTG
GTGGTGAGCGCAGCGCGGAATGCGTGGCGTGGGCGACAGCGGAGCTGTGG
GCGCTGAGCCGATGCGAGCGGGTGCTGGGCAGTATGTGGAGCAGCTTCTC
GGAGGTGGCGGGGCGACTGGCAGGTGGCGTGCGCTACGCGGGCGCGGACT
TCGGGCGCGTGGGCACGGAGGAGTGGGCGCCGGCGGTGCGCGCCGTGGCC
GACAGAGTGTGGACGAAGCACGACGACAAACGACGGCGTGAGGACGGGGT
TTGA