Gchil1616.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1616.t1
Unique NameGchil1616.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1172490..1173662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD09354
Preferred nameATPC
PFAMsATP-synt
Max annot lvl2759|Eukaryota
KEGG koko:K02115,ko:K08341
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko04068,ko04136,ko04137,ko04138,ko04139,ko04140,ko04212,ko04371,ko04621,ko04727,ko05167,map00190,map00195,map01100,map04068,map04136,map04137,map04138,map04139,map04140,map04212,map04371,map04621,map04727,map05167
KEGG ModuleM00157
GOsGO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009544,GO:0009579,GO:0009767,GO:0009772,GO:0009941,GO:0009987,GO:0015672,GO:0015979,GO:0015985,GO:0015986,GO:0016020,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019684,GO:0019693,GO:0022603,GO:0022900,GO:0030234,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034220,GO:0034357,GO:0034641,GO:0034654,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046034,GO:0046390,GO:0046483,GO:0050789,GO:0050790,GO:0050793,GO:0051179,GO:0051234,GO:0051239,GO:0055035,GO:0055085,GO:0055086,GO:0055114,GO:0065007,GO:0065009,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098772,GO:0098796,GO:0098807,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1905421,GO:2000026,GO:2000067,GO:2000280
Evalue2.31e-60
EggNOG OGsCOG0224@1|root,KOG1531@2759|Eukaryota
Descriptionproton-transporting ATP synthase activity, rotational mechanism
COG categoryC
BiGG ReactioniRC1080.CRv4_Au5_s6_g12596_t1
BRITEko00000,ko00001,ko00002,ko00194,ko03029,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1616Gchil1616Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1172490..1173662 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1616.t1.start1Gchil1616.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1172490..1172492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1616.t1.CDS1Gchil1616.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1172490..1173662 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1616.t1.exon1Gchil1616.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1172490..1173662 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1616.t1.stop1Gchil1616.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1173660..1173662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1616.t1Gchil1616.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1172490..1173662 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1616.t1 ID=Gchil1616.t1|Name=Gchil1616.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=391bp
MSLAFGIASPTSLPWKPATRPAVCAPRVRGIVRRQTQPLMSVAAQELRHR
IRTVESAEKIVSALRLVAAARIRSSSHAALRARPFANHLQVMLASVLRLA
QARKLDMKGIANKTATYDVPTTVLHDPSVSKAFLDRMYLALMYTPRTLQV
ALIVVVTSDKRFCGSYNREIISQAVRRMRSLTKAGYEVELAIIGRTAMQF
FQARYKRIPIRYYEPLGRSSDALATATNLNNMLLSHFIAGGVERVEIIYT
RFVSLIASTPSMRTLLPVTPSGIEAVGDEIFQLTSLNGHFATRPASRPNS
APLTPPSLYQVSDTELVSLLNAMLPMYVTSQVQRIIRESIASEQASRLAA
MQAATDNARELITRLRSMYNKQRQARITNEIIEVTAGINA*
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spliced messenger RNA

>Gchil1616.t1 ID=Gchil1616.t1|Name=Gchil1616.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00004403_pilon:1172490..1173662+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTCGCCTTCGGCATCGCGTCTCCGACATCGCTTCCATGGAAGCC
CGCGACTCGTCCAGCAGTATGTGCTCCTCGCGTTCGCGGCATAGTTCGGC
GACAAACGCAACCGCTCATGTCTGTTGCAGCACAGGAATTACGTCACCGC
ATTCGCACTGTTGAATCTGCCGAGAAGATCGTGTCGGCTCTCAGGCTGGT
TGCTGCCGCGCGCATTCGTTCCTCTTCTCATGCTGCTCTTCGCGCTCGTC
CGTTTGCAAATCACCTGCAGGTCATGCTGGCATCTGTGCTGCGTCTTGCG
CAGGCTCGCAAACTAGACATGAAGGGCATTGCAAACAAAACCGCTACATA
TGATGTTCCCACTACTGTGCTGCATGACCCTTCGGTCTCCAAAGCCTTTC
TTGACAGAATGTACCTGGCCTTGATGTATACCCCTCGAACGTTGCAAGTG
GCGTTGATTGTCGTCGTCACTTCCGATAAGCGCTTCTGCGGCTCCTACAA
CCGTGAAATAATCTCTCAGGCCGTCAGAAGGATGCGCAGCCTTACCAAAG
CTGGTTATGAAGTTGAATTGGCGATTATTGGTCGAACGGCGATGCAATTC
TTTCAAGCACGCTACAAGAGGATCCCGATACGCTACTATGAGCCACTGGG
CAGGTCGTCGGACGCCCTTGCTACAGCAACCAATCTTAACAATATGCTGC
TTTCTCACTTCATAGCCGGTGGGGTGGAAAGGGTTGAAATTATTTACACA
AGATTCGTGAGCCTCATTGCTAGTACTCCAAGTATGCGAACGCTTCTGCC
GGTAACTCCTTCTGGTATTGAGGCAGTCGGTGATGAAATATTTCAACTTA
CTTCACTCAACGGTCATTTTGCAACTCGGCCGGCGTCCCGACCCAATTCT
GCTCCCCTAACTCCCCCATCTTTATATCAAGTTTCCGATACTGAGCTTGT
GTCATTATTGAACGCGATGTTGCCCATGTATGTCACCTCGCAGGTACAAC
GCATTATACGCGAATCAATAGCTTCTGAGCAAGCATCTCGTTTGGCAGCC
ATGCAAGCCGCAACTGATAATGCGCGAGAGCTTATCACTCGTTTGAGATC
GATGTATAATAAACAACGACAAGCGCGAATAACAAACGAAATAATAGAAG
TTACTGCAGGCATAAACGCTTAA
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protein sequence of Gchil1616.t1

>Gchil1616.t1 ID=Gchil1616.t1|Name=Gchil1616.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=391bp
MSLAFGIASPTSLPWKPATRPAVCAPRVRGIVRRQTQPLMSVAAQELRHR
IRTVESAEKIVSALRLVAAARIRSSSHAALRARPFANHLQVMLASVLRLA
QARKLDMKGIANKTATYDVPTTVLHDPSVSKAFLDRMYLALMYTPRTLQV
ALIVVVTSDKRFCGSYNREIISQAVRRMRSLTKAGYEVELAIIGRTAMQF
FQARYKRIPIRYYEPLGRSSDALATATNLNNMLLSHFIAGGVERVEIIYT
RFVSLIASTPSMRTLLPVTPSGIEAVGDEIFQLTSLNGHFATRPASRPNS
APLTPPSLYQVSDTELVSLLNAMLPMYVTSQVQRIIRESIASEQASRLAA
MQAATDNARELITRLRSMYNKQRQARITNEIIEVTAGINA*
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mRNA from alignment at tig00004403_pilon:1172490..1173662+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1616.t1 ID=Gchil1616.t1|Name=Gchil1616.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00004403_pilon:1172490..1173662+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCTCGCCTTCGGCATCGCGTCTCCGACATCGCTTCCATGGAAGCC
CGCGACTCGTCCAGCAGTATGTGCTCCTCGCGTTCGCGGCATAGTTCGGC
GACAAACGCAACCGCTCATGTCTGTTGCAGCACAGGAATTACGTCACCGC
ATTCGCACTGTTGAATCTGCCGAGAAGATCGTGTCGGCTCTCAGGCTGGT
TGCTGCCGCGCGCATTCGTTCCTCTTCTCATGCTGCTCTTCGCGCTCGTC
CGTTTGCAAATCACCTGCAGGTCATGCTGGCATCTGTGCTGCGTCTTGCG
CAGGCTCGCAAACTAGACATGAAGGGCATTGCAAACAAAACCGCTACATA
TGATGTTCCCACTACTGTGCTGCATGACCCTTCGGTCTCCAAAGCCTTTC
TTGACAGAATGTACCTGGCCTTGATGTATACCCCTCGAACGTTGCAAGTG
GCGTTGATTGTCGTCGTCACTTCCGATAAGCGCTTCTGCGGCTCCTACAA
CCGTGAAATAATCTCTCAGGCCGTCAGAAGGATGCGCAGCCTTACCAAAG
CTGGTTATGAAGTTGAATTGGCGATTATTGGTCGAACGGCGATGCAATTC
TTTCAAGCACGCTACAAGAGGATCCCGATACGCTACTATGAGCCACTGGG
CAGGTCGTCGGACGCCCTTGCTACAGCAACCAATCTTAACAATATGCTGC
TTTCTCACTTCATAGCCGGTGGGGTGGAAAGGGTTGAAATTATTTACACA
AGATTCGTGAGCCTCATTGCTAGTACTCCAAGTATGCGAACGCTTCTGCC
GGTAACTCCTTCTGGTATTGAGGCAGTCGGTGATGAAATATTTCAACTTA
CTTCACTCAACGGTCATTTTGCAACTCGGCCGGCGTCCCGACCCAATTCT
GCTCCCCTAACTCCCCCATCTTTATATCAAGTTTCCGATACTGAGCTTGT
GTCATTATTGAACGCGATGTTGCCCATGTATGTCACCTCGCAGGTACAAC
GCATTATACGCGAATCAATAGCTTCTGAGCAAGCATCTCGTTTGGCAGCC
ATGCAAGCCGCAACTGATAATGCGCGAGAGCTTATCACTCGTTTGAGATC
GATGTATAATAAACAACGACAAGCGCGAATAACAAACGAAATAATAGAAG
TTACTGCAGGCATAAACGCTTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1172490..1173662+

>Gchil1616.t1 ID=Gchil1616.t1|Name=Gchil1616.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1173bp|location=Sequence derived from alignment at tig00004403_pilon:1172490..1173662+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCTCGCCTTCGGCATCGCGTCTCCGACATCGCTTCCATGGAAGCC
CGCGACTCGTCCAGCAGTATGTGCTCCTCGCGTTCGCGGCATAGTTCGGC
GACAAACGCAACCGCTCATGTCTGTTGCAGCACAGGAATTACGTCACCGC
ATTCGCACTGTTGAATCTGCCGAGAAGATCGTGTCGGCTCTCAGGCTGGT
TGCTGCCGCGCGCATTCGTTCCTCTTCTCATGCTGCTCTTCGCGCTCGTC
CGTTTGCAAATCACCTGCAGGTCATGCTGGCATCTGTGCTGCGTCTTGCG
CAGGCTCGCAAACTAGACATGAAGGGCATTGCAAACAAAACCGCTACATA
TGATGTTCCCACTACTGTGCTGCATGACCCTTCGGTCTCCAAAGCCTTTC
TTGACAGAATGTACCTGGCCTTGATGTATACCCCTCGAACGTTGCAAGTG
GCGTTGATTGTCGTCGTCACTTCCGATAAGCGCTTCTGCGGCTCCTACAA
CCGTGAAATAATCTCTCAGGCCGTCAGAAGGATGCGCAGCCTTACCAAAG
CTGGTTATGAAGTTGAATTGGCGATTATTGGTCGAACGGCGATGCAATTC
TTTCAAGCACGCTACAAGAGGATCCCGATACGCTACTATGAGCCACTGGG
CAGGTCGTCGGACGCCCTTGCTACAGCAACCAATCTTAACAATATGCTGC
TTTCTCACTTCATAGCCGGTGGGGTGGAAAGGGTTGAAATTATTTACACA
AGATTCGTGAGCCTCATTGCTAGTACTCCAAGTATGCGAACGCTTCTGCC
GGTAACTCCTTCTGGTATTGAGGCAGTCGGTGATGAAATATTTCAACTTA
CTTCACTCAACGGTCATTTTGCAACTCGGCCGGCGTCCCGACCCAATTCT
GCTCCCCTAACTCCCCCATCTTTATATCAAGTTTCCGATACTGAGCTTGT
GTCATTATTGAACGCGATGTTGCCCATGTATGTCACCTCGCAGGTACAAC
GCATTATACGCGAATCAATAGCTTCTGAGCAAGCATCTCGTTTGGCAGCC
ATGCAAGCCGCAACTGATAATGCGCGAGAGCTTATCACTCGTTTGAGATC
GATGTATAATAAACAACGACAAGCGCGAATAACAAACGAAATAATAGAAG
TTACTGCAGGCATAAACGCTTAA
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