Gchil1609.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1609.t1
Unique Name	Gchil1609.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	286

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1153843..1154700 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706223.1
PFAMs	DHDPS,Saccharop_dh_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC03062,RC03063
KEGG ko	ko:K01714
KEGG Reaction	R10147
KEGG Pathway	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230
KEGG Module	M00016,M00525,M00526,M00527
Evalue	2.49e-124
EggNOG OGs	COG0329@1\|root,2QQ8M@2759\|Eukaryota
EC	4.3.3.7
Description	4-hydroxy-tetrahydrodipicolinate synthase
COG category	EM
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1609	Gchil1609	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1153843..1154700 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1609.t1.start1	Gchil1609.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1153843..1153845 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1609.t1.CDS1	Gchil1609.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1153843..1154700 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1609.t1.exon1	Gchil1609.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1153843..1154700 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1609.t1.stop1	Gchil1609.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1154698..1154700 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1609.t1	Gchil1609.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1153843..1154700 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1153843..1154700+
coding sequence from alignment at tig00004403_pilon:1153843..1154700+

mRNA sequence

>Gchil1609.t1 ID=Gchil1609.t1|Name=Gchil1609.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=286bp
MVTPFKPNCSEIDYNTAEQLASHLVSFGSDALVIAGTTGESPTLTWSEQY
ELFTVVRNAVGARTKLIAGAGSNSTAEAVDATRRAGKLRLDATLQVVPYY
NKPPQEGMYQHFAHIANAQPDLPVMLYNIPSRTGVNMLPETISRLSHIDN
IIAVKQATADMDQLQAVRANTPSDFHIYAGDDALTLPFLSMGASGVVSVA
SHFVGPQIQQLVSSYIQGNVAAATHIHMRYAALFSDLFCMTNPIPTKTAL
RLLGWNVGGCRLPLVDATPQVEQRLAQLLSKLELL*

spliced messenger RNA

>Gchil1609.t1 ID=Gchil1609.t1|Name=Gchil1609.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00004403_pilon:1153843..1154700+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCACCCCGTTCAAGCCCAATTGCTCCGAGATCGACTACAACACCGC
GGAGCAACTCGCCTCCCACCTCGTGTCCTTCGGCTCCGACGCGCTCGTCA
TCGCCGGCACCACCGGCGAGTCGCCCACCCTCACCTGGTCCGAGCAGTAC
GAACTCTTCACCGTCGTGCGCAACGCCGTCGGCGCCCGCACAAAGCTCAT
TGCCGGCGCCGGATCCAACTCCACTGCGGAGGCGGTGGACGCCACGCGTC
GCGCCGGAAAGCTACGTCTCGACGCCACCTTGCAGGTCGTGCCCTACTAC
AACAAACCGCCCCAGGAGGGCATGTACCAGCACTTTGCCCACATTGCAAA
TGCTCAGCCGGATCTCCCCGTCATGCTCTACAACATTCCCTCGCGAACTG
GTGTCAATATGCTGCCCGAAACCATCTCTAGACTGTCGCACATCGATAAT
ATCATCGCCGTCAAACAGGCCACCGCTGACATGGACCAGTTGCAAGCCGT
GCGCGCAAATACCCCCTCAGACTTCCACATCTACGCTGGTGATGATGCGC
TCACTCTCCCCTTTCTGTCCATGGGCGCGTCCGGAGTCGTCAGCGTGGCC
AGCCACTTTGTCGGCCCCCAGATTCAGCAGCTCGTTTCGTCGTACATTCA
AGGCAATGTGGCAGCCGCAACTCACATTCACATGCGCTACGCCGCCCTGT
TTTCGGATCTCTTCTGCATGACCAATCCAATACCCACAAAGACCGCTCTA
CGTCTACTCGGCTGGAATGTAGGCGGTTGTCGACTTCCTCTCGTCGATGC
CACCCCACAAGTTGAGCAGCGCCTCGCGCAATTGTTAAGCAAACTAGAAC
TACTATAA

protein sequence of Gchil1609.t1

>Gchil1609.t1 ID=Gchil1609.t1|Name=Gchil1609.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=286bp
MVTPFKPNCSEIDYNTAEQLASHLVSFGSDALVIAGTTGESPTLTWSEQY
ELFTVVRNAVGARTKLIAGAGSNSTAEAVDATRRAGKLRLDATLQVVPYY
NKPPQEGMYQHFAHIANAQPDLPVMLYNIPSRTGVNMLPETISRLSHIDN
IIAVKQATADMDQLQAVRANTPSDFHIYAGDDALTLPFLSMGASGVVSVA
SHFVGPQIQQLVSSYIQGNVAAATHIHMRYAALFSDLFCMTNPIPTKTAL
RLLGWNVGGCRLPLVDATPQVEQRLAQLLSKLELL*

mRNA from alignment at tig00004403_pilon:1153843..1154700+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1609.t1 ID=Gchil1609.t1|Name=Gchil1609.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00004403_pilon:1153843..1154700+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCACCCCGTTCAAGCCCAATTGCTCCGAGATCGACTACAACACCGC
GGAGCAACTCGCCTCCCACCTCGTGTCCTTCGGCTCCGACGCGCTCGTCA
TCGCCGGCACCACCGGCGAGTCGCCCACCCTCACCTGGTCCGAGCAGTAC
GAACTCTTCACCGTCGTGCGCAACGCCGTCGGCGCCCGCACAAAGCTCAT
TGCCGGCGCCGGATCCAACTCCACTGCGGAGGCGGTGGACGCCACGCGTC
GCGCCGGAAAGCTACGTCTCGACGCCACCTTGCAGGTCGTGCCCTACTAC
AACAAACCGCCCCAGGAGGGCATGTACCAGCACTTTGCCCACATTGCAAA
TGCTCAGCCGGATCTCCCCGTCATGCTCTACAACATTCCCTCGCGAACTG
GTGTCAATATGCTGCCCGAAACCATCTCTAGACTGTCGCACATCGATAAT
ATCATCGCCGTCAAACAGGCCACCGCTGACATGGACCAGTTGCAAGCCGT
GCGCGCAAATACCCCCTCAGACTTCCACATCTACGCTGGTGATGATGCGC
TCACTCTCCCCTTTCTGTCCATGGGCGCGTCCGGAGTCGTCAGCGTGGCC
AGCCACTTTGTCGGCCCCCAGATTCAGCAGCTCGTTTCGTCGTACATTCA
AGGCAATGTGGCAGCCGCAACTCACATTCACATGCGCTACGCCGCCCTGT
TTTCGGATCTCTTCTGCATGACCAATCCAATACCCACAAAGACCGCTCTA
CGTCTACTCGGCTGGAATGTAGGCGGTTGTCGACTTCCTCTCGTCGATGC
CACCCCACAAGTTGAGCAGCGCCTCGCGCAATTGTTAAGCAAACTAGAAC
TACTATAA

Coding sequence (CDS) from alignment at tig00004403_pilon:1153843..1154700+

>Gchil1609.t1 ID=Gchil1609.t1|Name=Gchil1609.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00004403_pilon:1153843..1154700+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCACCCCGTTCAAGCCCAATTGCTCCGAGATCGACTACAACACCGC
GGAGCAACTCGCCTCCCACCTCGTGTCCTTCGGCTCCGACGCGCTCGTCA
TCGCCGGCACCACCGGCGAGTCGCCCACCCTCACCTGGTCCGAGCAGTAC
GAACTCTTCACCGTCGTGCGCAACGCCGTCGGCGCCCGCACAAAGCTCAT
TGCCGGCGCCGGATCCAACTCCACTGCGGAGGCGGTGGACGCCACGCGTC
GCGCCGGAAAGCTACGTCTCGACGCCACCTTGCAGGTCGTGCCCTACTAC
AACAAACCGCCCCAGGAGGGCATGTACCAGCACTTTGCCCACATTGCAAA
TGCTCAGCCGGATCTCCCCGTCATGCTCTACAACATTCCCTCGCGAACTG
GTGTCAATATGCTGCCCGAAACCATCTCTAGACTGTCGCACATCGATAAT
ATCATCGCCGTCAAACAGGCCACCGCTGACATGGACCAGTTGCAAGCCGT
GCGCGCAAATACCCCCTCAGACTTCCACATCTACGCTGGTGATGATGCGC
TCACTCTCCCCTTTCTGTCCATGGGCGCGTCCGGAGTCGTCAGCGTGGCC
AGCCACTTTGTCGGCCCCCAGATTCAGCAGCTCGTTTCGTCGTACATTCA
AGGCAATGTGGCAGCCGCAACTCACATTCACATGCGCTACGCCGCCCTGT
TTTCGGATCTCTTCTGCATGACCAATCCAATACCCACAAAGACCGCTCTA
CGTCTACTCGGCTGGAATGTAGGCGGTTGTCGACTTCCTCTCGTCGATGC
CACCCCACAAGTTGAGCAGCGCCTCGCGCAATTGTTAAGCAAACTAGAAC
TACTATAA