Gchil1604.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1604.t1
Unique NameGchil1604.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length471
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1144325..1145813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog653948.CCA14206
PFAMsFKBP_C,Pro_isomerase,TPR_2,TPR_8
Max annot lvl2759|Eukaryota
KEGG koko:K01802,ko:K09566,ko:K09568
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003755,GO:0003824,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006974,GO:0008143,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0012505,GO:0016018,GO:0016070,GO:0016071,GO:0016192,GO:0016604,GO:0016607,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019222,GO:0019538,GO:0030141,GO:0031323,GO:0031326,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0033218,GO:0033554,GO:0034641,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042277,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045055,GO:0045069,GO:0045070,GO:0045321,GO:0046483,GO:0046903,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051716,GO:0060205,GO:0060255,GO:0065007,GO:0070013,GO:0070717,GO:0071007,GO:0071013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097708,GO:0099503,GO:0101002,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1903506,GO:1903900,GO:1903902,GO:1904813,GO:1990904,GO:2000112,GO:2001141
Evalue1.51e-20
EggNOG OGsCOG0545@1|root,COG0652@1|root,KOG0543@2759|Eukaryota,KOG0546@2759|Eukaryota
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
BRITEko00000,ko01000,ko03041,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1604Gchil1604Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1144325..1145813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1604.t1Gchil1604.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1144325..1145813 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1604.t1.stop1Gchil1604.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1144325..1144327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1604.t1.CDS1Gchil1604.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1144325..1144499 -
Gchil1604.t1.CDS2Gchil1604.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1144576..1145813 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1604.t1.exon1Gchil1604.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1144325..1144499 -
Gchil1604.t1.exon2Gchil1604.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1144576..1145813 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1604.t1.intron1Gchil1604.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1144500..1144575 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1604.t1.start1Gchil1604.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1145811..1145813 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1604.t1 ID=Gchil1604.t1|Name=Gchil1604.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=471bp
MSRSKWDVSEGTEDLTEDGSLLKIVLIEGDGDSVGRGAKVSLKYSLRLSD
ARDAAVFDSSARRKDGVLHFTLGKRKVIPALELVTQTMKLGEKCRVRAAA
PYAFGSKGLKRKGVPPNATVFMDVELIHFEHAEKKKPFTQMSPAERFDMA
KKYKEQGNALFKELKYDRAMAQYSQCIQYLANVFYNQHRHPQSDTDNGQV
AQQNGHAHVANGSPATANGQQVPEPKEEGFQEAHVEPDEQTPQHGLADHD
EVVETLDVSTATQEEKDTHSPIPQSQEDQPSEQAAHTDVNASEAHADSTV
DHESQQKPFQQTQSEPVAENDSHVANAAHDQPSSSKEVNHSGGPSQVDNN
GTGQNEESEAESPSKEDVSALHVTTLNNLSLCLLKLEQFKKAVESSNLAL
SADPSSFKAFYYRGRALVALGEWEKAREDLVSALKLQKNNMGIRTEIQKL
DRKRKQFEEKEKRQAAAMFA*
back to top

spliced messenger RNA

>Gchil1604.t1 ID=Gchil1604.t1|Name=Gchil1604.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00004403_pilon:1144325..1145813- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCAGTAAATGGGACGTGTCTGAAGGCACGGAGGACCTCACCGA
GGACGGCTCTCTGCTCAAGATCGTTCTCATCGAGGGCGACGGCGACTCCG
TCGGTCGTGGCGCAAAGGTTTCCCTCAAGTACTCGCTGCGTCTATCTGAC
GCGCGCGATGCTGCCGTCTTTGACAGCTCCGCGCGGCGGAAGGACGGAGT
TCTGCACTTTACGCTAGGAAAGCGCAAGGTAATTCCGGCGCTTGAGCTTG
TCACGCAAACCATGAAGCTCGGCGAGAAATGCCGCGTCAGAGCCGCCGCG
CCGTATGCGTTTGGCTCCAAGGGACTCAAGCGAAAGGGCGTGCCCCCGAA
TGCTACCGTCTTTATGGATGTTGAGCTCATCCACTTTGAGCACGCTGAGA
AGAAGAAACCGTTTACACAGATGAGTCCGGCGGAACGCTTTGACATGGCC
AAGAAATATAAGGAACAAGGAAATGCGCTCTTCAAGGAACTCAAGTACGA
CCGCGCTATGGCTCAGTACAGCCAGTGCATTCAGTATCTGGCCAATGTGT
TCTACAACCAACACCGCCACCCGCAGTCCGACACCGACAATGGCCAGGTA
GCACAGCAAAACGGTCATGCCCACGTCGCTAACGGTTCGCCCGCCACCGC
AAATGGTCAACAAGTGCCCGAGCCGAAAGAAGAAGGCTTTCAAGAGGCCC
ACGTCGAGCCCGATGAACAAACACCTCAACACGGGCTCGCAGACCACGAT
GAGGTCGTGGAAACTTTAGACGTAAGCACCGCGACGCAGGAGGAAAAAGA
CACCCACTCCCCAATTCCTCAATCTCAAGAGGACCAACCCAGTGAACAAG
CTGCTCACACCGATGTAAACGCTAGTGAGGCACATGCTGATTCCACAGTG
GACCACGAATCACAACAGAAACCTTTCCAACAAACACAGTCCGAACCTGT
AGCAGAAAACGATTCTCATGTCGCCAACGCTGCTCATGACCAACCCTCAA
GTAGCAAGGAAGTAAATCACAGCGGTGGCCCATCCCAAGTGGACAATAAT
GGCACTGGTCAAAACGAGGAGAGCGAAGCCGAGAGCCCTTCGAAAGAAGA
CGTCTCCGCGCTTCACGTCACAACTTTGAATAACTTGTCGCTGTGTCTAC
TCAAGCTGGAGCAGTTCAAAAAAGCCGTTGAAAGTTCAAACCTTGCGCTG
AGCGCTGATCCGTCAAGTTTTAAAGCGTTTTACTACAGAGGTCGAGCGTT
GGTCGCGCTTGGTGAATGGGAAAAGGCAAGAGAGGATTTGGTCTCAGCGT
TAAAACTGCAGAAGAACAACATGGGAATTCGCACGGAAATCCAAAAGCTG
GACAGAAAGCGAAAACAGTTTGAAGAAAAAGAGAAAAGGCAAGCTGCGGC
AATGTTTGCATAG
back to top

protein sequence of Gchil1604.t1

>Gchil1604.t1 ID=Gchil1604.t1|Name=Gchil1604.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=471bp
MSRSKWDVSEGTEDLTEDGSLLKIVLIEGDGDSVGRGAKVSLKYSLRLSD
ARDAAVFDSSARRKDGVLHFTLGKRKVIPALELVTQTMKLGEKCRVRAAA
PYAFGSKGLKRKGVPPNATVFMDVELIHFEHAEKKKPFTQMSPAERFDMA
KKYKEQGNALFKELKYDRAMAQYSQCIQYLANVFYNQHRHPQSDTDNGQV
AQQNGHAHVANGSPATANGQQVPEPKEEGFQEAHVEPDEQTPQHGLADHD
EVVETLDVSTATQEEKDTHSPIPQSQEDQPSEQAAHTDVNASEAHADSTV
DHESQQKPFQQTQSEPVAENDSHVANAAHDQPSSSKEVNHSGGPSQVDNN
GTGQNEESEAESPSKEDVSALHVTTLNNLSLCLLKLEQFKKAVESSNLAL
SADPSSFKAFYYRGRALVALGEWEKAREDLVSALKLQKNNMGIRTEIQKL
DRKRKQFEEKEKRQAAAMFA*
back to top

mRNA from alignment at tig00004403_pilon:1144325..1145813-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1604.t1 ID=Gchil1604.t1|Name=Gchil1604.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1489bp|location=Sequence derived from alignment at tig00004403_pilon:1144325..1145813- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGCAGTAAATGGGACGTGTCTGAAGGCACGGAGGACCTCACCGA
GGACGGCTCTCTGCTCAAGATCGTTCTCATCGAGGGCGACGGCGACTCCG
TCGGTCGTGGCGCAAAGGTTTCCCTCAAGTACTCGCTGCGTCTATCTGAC
GCGCGCGATGCTGCCGTCTTTGACAGCTCCGCGCGGCGGAAGGACGGAGT
TCTGCACTTTACGCTAGGAAAGCGCAAGGTAATTCCGGCGCTTGAGCTTG
TCACGCAAACCATGAAGCTCGGCGAGAAATGCCGCGTCAGAGCCGCCGCG
CCGTATGCGTTTGGCTCCAAGGGACTCAAGCGAAAGGGCGTGCCCCCGAA
TGCTACCGTCTTTATGGATGTTGAGCTCATCCACTTTGAGCACGCTGAGA
AGAAGAAACCGTTTACACAGATGAGTCCGGCGGAACGCTTTGACATGGCC
AAGAAATATAAGGAACAAGGAAATGCGCTCTTCAAGGAACTCAAGTACGA
CCGCGCTATGGCTCAGTACAGCCAGTGCATTCAGTATCTGGCCAATGTGT
TCTACAACCAACACCGCCACCCGCAGTCCGACACCGACAATGGCCAGGTA
GCACAGCAAAACGGTCATGCCCACGTCGCTAACGGTTCGCCCGCCACCGC
AAATGGTCAACAAGTGCCCGAGCCGAAAGAAGAAGGCTTTCAAGAGGCCC
ACGTCGAGCCCGATGAACAAACACCTCAACACGGGCTCGCAGACCACGAT
GAGGTCGTGGAAACTTTAGACGTAAGCACCGCGACGCAGGAGGAAAAAGA
CACCCACTCCCCAATTCCTCAATCTCAAGAGGACCAACCCAGTGAACAAG
CTGCTCACACCGATGTAAACGCTAGTGAGGCACATGCTGATTCCACAGTG
GACCACGAATCACAACAGAAACCTTTCCAACAAACACAGTCCGAACCTGT
AGCAGAAAACGATTCTCATGTCGCCAACGCTGCTCATGACCAACCCTCAA
GTAGCAAGGAAGTAAATCACAGCGGTGGCCCATCCCAAGTGGACAATAAT
GGCACTGGTCAAAACGAGGAGAGCGAAGCCGAGAGCCCTTCGAAAGAAGA
CGTCTCCGCGCTTCACGTCACAACTTTGAATAACTTGTCGCTGTGTCTAC
TCAAGCTGGAGCAGTTCAAAAAAGCCGTTGAAAGTTCAAACCTTGCGCTG
AGCGCTGATCCGTCAAGTTTTAAAGCGTTTTACTACAGGTATGTCATGGG
CCTCTTCACCTAGCTTGTACAGGGCATGAGCTCGCATTACTAACTAATTT
CCGTTCAATTGCAGAGGTCGAGCGTTGGTCGCGCTTGGTGAATGGGAAAA
GGCAAGAGAGGATTTGGTCTCAGCGTTAAAACTGCAGAAGAACAACATGG
GAATTCGCACGGAAATCCAAAAGCTGGACAGAAAGCGAAAACAGTTTGAA
GAAAAAGAGAAAAGGCAAGCTGCGGCAATGTTTGCATAG
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:1144325..1145813-

>Gchil1604.t1 ID=Gchil1604.t1|Name=Gchil1604.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1413bp|location=Sequence derived from alignment at tig00004403_pilon:1144325..1145813- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGCAGTAAATGGGACGTGTCTGAAGGCACGGAGGACCTCACCGA
GGACGGCTCTCTGCTCAAGATCGTTCTCATCGAGGGCGACGGCGACTCCG
TCGGTCGTGGCGCAAAGGTTTCCCTCAAGTACTCGCTGCGTCTATCTGAC
GCGCGCGATGCTGCCGTCTTTGACAGCTCCGCGCGGCGGAAGGACGGAGT
TCTGCACTTTACGCTAGGAAAGCGCAAGGTAATTCCGGCGCTTGAGCTTG
TCACGCAAACCATGAAGCTCGGCGAGAAATGCCGCGTCAGAGCCGCCGCG
CCGTATGCGTTTGGCTCCAAGGGACTCAAGCGAAAGGGCGTGCCCCCGAA
TGCTACCGTCTTTATGGATGTTGAGCTCATCCACTTTGAGCACGCTGAGA
AGAAGAAACCGTTTACACAGATGAGTCCGGCGGAACGCTTTGACATGGCC
AAGAAATATAAGGAACAAGGAAATGCGCTCTTCAAGGAACTCAAGTACGA
CCGCGCTATGGCTCAGTACAGCCAGTGCATTCAGTATCTGGCCAATGTGT
TCTACAACCAACACCGCCACCCGCAGTCCGACACCGACAATGGCCAGGTA
GCACAGCAAAACGGTCATGCCCACGTCGCTAACGGTTCGCCCGCCACCGC
AAATGGTCAACAAGTGCCCGAGCCGAAAGAAGAAGGCTTTCAAGAGGCCC
ACGTCGAGCCCGATGAACAAACACCTCAACACGGGCTCGCAGACCACGAT
GAGGTCGTGGAAACTTTAGACGTAAGCACCGCGACGCAGGAGGAAAAAGA
CACCCACTCCCCAATTCCTCAATCTCAAGAGGACCAACCCAGTGAACAAG
CTGCTCACACCGATGTAAACGCTAGTGAGGCACATGCTGATTCCACAGTG
GACCACGAATCACAACAGAAACCTTTCCAACAAACACAGTCCGAACCTGT
AGCAGAAAACGATTCTCATGTCGCCAACGCTGCTCATGACCAACCCTCAA
GTAGCAAGGAAGTAAATCACAGCGGTGGCCCATCCCAAGTGGACAATAAT
GGCACTGGTCAAAACGAGGAGAGCGAAGCCGAGAGCCCTTCGAAAGAAGA
CGTCTCCGCGCTTCACGTCACAACTTTGAATAACTTGTCGCTGTGTCTAC
TCAAGCTGGAGCAGTTCAAAAAAGCCGTTGAAAGTTCAAACCTTGCGCTG
AGCGCTGATCCGTCAAGTTTTAAAGCGTTTTACTACAGAGGTCGAGCGTT
GGTCGCGCTTGGTGAATGGGAAAAGGCAAGAGAGGATTTGGTCTCAGCGT
TAAAACTGCAGAAGAACAACATGGGAATTCGCACGGAAATCCAAAAGCTG
GACAGAAAGCGAAAACAGTTTGAAGAAAAAGAGAAAAGGCAAGCTGCGGC
AATGTTTGCATAG
back to top