Gchil1603.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1603.t1
Unique Name	Gchil1603.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	565

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1140508..1142202 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	479431.Namu_1323
Max annot lvl	201174\|Actinobacteria
Evalue	1.95e-36
EggNOG OGs	295DM@1\|root,2ZSRH@2\|Bacteria,2HRSU@201174\|Actinobacteria

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1603	Gchil1603	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1140508..1142202 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1603.t1.start1	Gchil1603.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1140508..1140510 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1603.t1.CDS1	Gchil1603.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1140508..1142202 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1603.t1.exon1	Gchil1603.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1140508..1142202 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1603.t1.stop1	Gchil1603.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1142200..1142202 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1603.t1	Gchil1603.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1140508..1142202 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1140508..1142202+
coding sequence from alignment at tig00004403_pilon:1140508..1142202+

mRNA sequence

>Gchil1603.t1 ID=Gchil1603.t1|Name=Gchil1603.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=565bp
MLRLLPFFVLALILCNSASIPNAQPLGSVGSLPGFASNSFLSLNTLFSNL
ETRNNCLEACDTNDIVCRTSCYCDAVPFRGELSEPTSNLKCALRCVCRYL
KETKPDSLTFMRKFIECLKCDDPLDLNKDGTQDEEDLILILRAINDPSGE
LSASEVEADLNGDGMVDLDDATIVLESLIEQLGENALLPLSLSYDSEHDF
NWDQESLSSNTVRTEISSNSKAESLFFSDRQVQTCGLSSSGAYSKGTGPD
PTIVWDNGFAFNSSAKPSSADHWNWVKYGILLQGAKITLPDGAKAYERYR
SASGAELTVDYEKAVNEDSMIQAAVEDEIEAVKEAVKQLHDGEQASFSFH
STSARLVNSATENWQKALGGHRIWSVGTVTYDDSSCQLNVEITIKVEDFY
NFNKGQQDIATGLPDDDNGRFEVFGWAKSFFSRGSISRSESIPLQCCKDS
DCGNESEFDCECNLCTTQCPTTQRSGGQGFTSFTVDLMKTQGTFDASYQM
YTVPDELTISYEGQVVFGTGGLVSGSKTVAVSYGSNSSTSTVVTVEVNAP
RSGTLWDVSVSCPP*

spliced messenger RNA

>Gchil1603.t1 ID=Gchil1603.t1|Name=Gchil1603.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at tig00004403_pilon:1140508..1142202+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCGATTGTTGCCTTTTTTCGTTCTAGCATTGATTCTCTGCAATTC
TGCTAGTATCCCCAATGCACAACCTCTCGGATCCGTGGGATCACTTCCGG
GATTTGCTTCAAATTCATTTCTCTCCTTGAATACTCTTTTCTCCAATCTT
GAGACAAGGAACAATTGTCTGGAAGCTTGTGACACAAATGATATTGTCTG
TCGCACGTCTTGTTATTGCGATGCTGTCCCGTTCCGTGGGGAGCTTAGTG
AGCCGACCTCAAATCTGAAATGTGCACTTCGCTGTGTTTGCCGATATCTG
AAAGAAACCAAACCAGACTCTTTGACTTTCATGCGCAAGTTTATCGAGTG
TCTAAAGTGTGATGACCCCTTGGACCTCAACAAAGACGGAACTCAAGACG
AGGAAGACCTTATTTTGATACTTAGAGCAATCAACGATCCAAGCGGGGAA
CTCTCGGCTTCAGAAGTTGAAGCAGATCTCAACGGCGATGGCATGGTTGA
TTTGGATGACGCTACCATTGTGTTAGAGTCCTTGATTGAACAATTGGGCG
AAAATGCTCTCCTACCGTTGTCACTCTCGTACGATTCTGAACATGACTTT
AATTGGGATCAAGAATCACTTTCGTCCAACACGGTGAGAACGGAGATTAG
TTCCAACTCGAAGGCAGAATCATTGTTTTTCTCTGATCGTCAAGTGCAAA
CGTGTGGGTTATCCTCTTCCGGCGCATATTCTAAAGGCACCGGCCCAGAT
CCGACAATTGTTTGGGACAATGGTTTCGCTTTCAACTCGTCGGCCAAGCC
GTCTTCAGCGGACCATTGGAACTGGGTAAAATACGGAATCTTGCTTCAAG
GTGCAAAAATTACTCTACCAGACGGCGCAAAAGCATATGAACGGTATCGC
AGTGCGAGCGGGGCTGAACTCACAGTTGACTATGAGAAGGCAGTCAACGA
AGACTCGATGATACAAGCGGCGGTTGAGGACGAGATCGAGGCTGTGAAAG
AGGCAGTGAAACAACTGCATGATGGGGAACAAGCCTCATTTTCATTTCAC
TCTACGTCGGCAAGGCTTGTGAATAGCGCTACTGAGAACTGGCAGAAAGC
TCTGGGGGGTCATCGCATCTGGAGCGTTGGAACTGTGACTTACGATGATT
CAAGCTGTCAGTTGAACGTTGAAATCACTATTAAGGTGGAAGACTTCTAC
AACTTTAACAAGGGTCAACAGGACATTGCCACAGGACTTCCAGACGATGA
TAATGGGCGTTTCGAGGTATTTGGGTGGGCCAAGAGCTTTTTCAGCAGAG
GGTCGATTTCTCGATCTGAAAGCATACCTCTGCAATGCTGCAAGGATTCG
GACTGCGGTAACGAAAGCGAGTTTGACTGTGAGTGCAATCTGTGCACAAC
GCAGTGTCCAACAACCCAAAGGTCTGGTGGACAAGGATTCACGTCGTTTA
CAGTGGACTTGATGAAGACGCAAGGAACTTTTGACGCAAGTTATCAGATG
TATACTGTTCCGGATGAGCTAACCATTTCCTATGAAGGCCAAGTTGTGTT
CGGTACTGGCGGGTTGGTATCAGGGAGCAAGACTGTTGCTGTTAGCTACG
GCTCTAATTCATCGACAAGCACGGTAGTGACTGTTGAGGTGAATGCCCCA
CGATCTGGAACACTTTGGGACGTGTCCGTTTCTTGCCCTCCGTGA

protein sequence of Gchil1603.t1

>Gchil1603.t1 ID=Gchil1603.t1|Name=Gchil1603.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=565bp
MLRLLPFFVLALILCNSASIPNAQPLGSVGSLPGFASNSFLSLNTLFSNL
ETRNNCLEACDTNDIVCRTSCYCDAVPFRGELSEPTSNLKCALRCVCRYL
KETKPDSLTFMRKFIECLKCDDPLDLNKDGTQDEEDLILILRAINDPSGE
LSASEVEADLNGDGMVDLDDATIVLESLIEQLGENALLPLSLSYDSEHDF
NWDQESLSSNTVRTEISSNSKAESLFFSDRQVQTCGLSSSGAYSKGTGPD
PTIVWDNGFAFNSSAKPSSADHWNWVKYGILLQGAKITLPDGAKAYERYR
SASGAELTVDYEKAVNEDSMIQAAVEDEIEAVKEAVKQLHDGEQASFSFH
STSARLVNSATENWQKALGGHRIWSVGTVTYDDSSCQLNVEITIKVEDFY
NFNKGQQDIATGLPDDDNGRFEVFGWAKSFFSRGSISRSESIPLQCCKDS
DCGNESEFDCECNLCTTQCPTTQRSGGQGFTSFTVDLMKTQGTFDASYQM
YTVPDELTISYEGQVVFGTGGLVSGSKTVAVSYGSNSSTSTVVTVEVNAP
RSGTLWDVSVSCPP*

mRNA from alignment at tig00004403_pilon:1140508..1142202+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1603.t1 ID=Gchil1603.t1|Name=Gchil1603.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at tig00004403_pilon:1140508..1142202+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCGATTGTTGCCTTTTTTCGTTCTAGCATTGATTCTCTGCAATTC
TGCTAGTATCCCCAATGCACAACCTCTCGGATCCGTGGGATCACTTCCGG
GATTTGCTTCAAATTCATTTCTCTCCTTGAATACTCTTTTCTCCAATCTT
GAGACAAGGAACAATTGTCTGGAAGCTTGTGACACAAATGATATTGTCTG
TCGCACGTCTTGTTATTGCGATGCTGTCCCGTTCCGTGGGGAGCTTAGTG
AGCCGACCTCAAATCTGAAATGTGCACTTCGCTGTGTTTGCCGATATCTG
AAAGAAACCAAACCAGACTCTTTGACTTTCATGCGCAAGTTTATCGAGTG
TCTAAAGTGTGATGACCCCTTGGACCTCAACAAAGACGGAACTCAAGACG
AGGAAGACCTTATTTTGATACTTAGAGCAATCAACGATCCAAGCGGGGAA
CTCTCGGCTTCAGAAGTTGAAGCAGATCTCAACGGCGATGGCATGGTTGA
TTTGGATGACGCTACCATTGTGTTAGAGTCCTTGATTGAACAATTGGGCG
AAAATGCTCTCCTACCGTTGTCACTCTCGTACGATTCTGAACATGACTTT
AATTGGGATCAAGAATCACTTTCGTCCAACACGGTGAGAACGGAGATTAG
TTCCAACTCGAAGGCAGAATCATTGTTTTTCTCTGATCGTCAAGTGCAAA
CGTGTGGGTTATCCTCTTCCGGCGCATATTCTAAAGGCACCGGCCCAGAT
CCGACAATTGTTTGGGACAATGGTTTCGCTTTCAACTCGTCGGCCAAGCC
GTCTTCAGCGGACCATTGGAACTGGGTAAAATACGGAATCTTGCTTCAAG
GTGCAAAAATTACTCTACCAGACGGCGCAAAAGCATATGAACGGTATCGC
AGTGCGAGCGGGGCTGAACTCACAGTTGACTATGAGAAGGCAGTCAACGA
AGACTCGATGATACAAGCGGCGGTTGAGGACGAGATCGAGGCTGTGAAAG
AGGCAGTGAAACAACTGCATGATGGGGAACAAGCCTCATTTTCATTTCAC
TCTACGTCGGCAAGGCTTGTGAATAGCGCTACTGAGAACTGGCAGAAAGC
TCTGGGGGGTCATCGCATCTGGAGCGTTGGAACTGTGACTTACGATGATT
CAAGCTGTCAGTTGAACGTTGAAATCACTATTAAGGTGGAAGACTTCTAC
AACTTTAACAAGGGTCAACAGGACATTGCCACAGGACTTCCAGACGATGA
TAATGGGCGTTTCGAGGTATTTGGGTGGGCCAAGAGCTTTTTCAGCAGAG
GGTCGATTTCTCGATCTGAAAGCATACCTCTGCAATGCTGCAAGGATTCG
GACTGCGGTAACGAAAGCGAGTTTGACTGTGAGTGCAATCTGTGCACAAC
GCAGTGTCCAACAACCCAAAGGTCTGGTGGACAAGGATTCACGTCGTTTA
CAGTGGACTTGATGAAGACGCAAGGAACTTTTGACGCAAGTTATCAGATG
TATACTGTTCCGGATGAGCTAACCATTTCCTATGAAGGCCAAGTTGTGTT
CGGTACTGGCGGGTTGGTATCAGGGAGCAAGACTGTTGCTGTTAGCTACG
GCTCTAATTCATCGACAAGCACGGTAGTGACTGTTGAGGTGAATGCCCCA
CGATCTGGAACACTTTGGGACGTGTCCGTTTCTTGCCCTCCGTGA

Coding sequence (CDS) from alignment at tig00004403_pilon:1140508..1142202+

>Gchil1603.t1 ID=Gchil1603.t1|Name=Gchil1603.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1695bp|location=Sequence derived from alignment at tig00004403_pilon:1140508..1142202+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCGATTGTTGCCTTTTTTCGTTCTAGCATTGATTCTCTGCAATTC
TGCTAGTATCCCCAATGCACAACCTCTCGGATCCGTGGGATCACTTCCGG
GATTTGCTTCAAATTCATTTCTCTCCTTGAATACTCTTTTCTCCAATCTT
GAGACAAGGAACAATTGTCTGGAAGCTTGTGACACAAATGATATTGTCTG
TCGCACGTCTTGTTATTGCGATGCTGTCCCGTTCCGTGGGGAGCTTAGTG
AGCCGACCTCAAATCTGAAATGTGCACTTCGCTGTGTTTGCCGATATCTG
AAAGAAACCAAACCAGACTCTTTGACTTTCATGCGCAAGTTTATCGAGTG
TCTAAAGTGTGATGACCCCTTGGACCTCAACAAAGACGGAACTCAAGACG
AGGAAGACCTTATTTTGATACTTAGAGCAATCAACGATCCAAGCGGGGAA
CTCTCGGCTTCAGAAGTTGAAGCAGATCTCAACGGCGATGGCATGGTTGA
TTTGGATGACGCTACCATTGTGTTAGAGTCCTTGATTGAACAATTGGGCG
AAAATGCTCTCCTACCGTTGTCACTCTCGTACGATTCTGAACATGACTTT
AATTGGGATCAAGAATCACTTTCGTCCAACACGGTGAGAACGGAGATTAG
TTCCAACTCGAAGGCAGAATCATTGTTTTTCTCTGATCGTCAAGTGCAAA
CGTGTGGGTTATCCTCTTCCGGCGCATATTCTAAAGGCACCGGCCCAGAT
CCGACAATTGTTTGGGACAATGGTTTCGCTTTCAACTCGTCGGCCAAGCC
GTCTTCAGCGGACCATTGGAACTGGGTAAAATACGGAATCTTGCTTCAAG
GTGCAAAAATTACTCTACCAGACGGCGCAAAAGCATATGAACGGTATCGC
AGTGCGAGCGGGGCTGAACTCACAGTTGACTATGAGAAGGCAGTCAACGA
AGACTCGATGATACAAGCGGCGGTTGAGGACGAGATCGAGGCTGTGAAAG
AGGCAGTGAAACAACTGCATGATGGGGAACAAGCCTCATTTTCATTTCAC
TCTACGTCGGCAAGGCTTGTGAATAGCGCTACTGAGAACTGGCAGAAAGC
TCTGGGGGGTCATCGCATCTGGAGCGTTGGAACTGTGACTTACGATGATT
CAAGCTGTCAGTTGAACGTTGAAATCACTATTAAGGTGGAAGACTTCTAC
AACTTTAACAAGGGTCAACAGGACATTGCCACAGGACTTCCAGACGATGA
TAATGGGCGTTTCGAGGTATTTGGGTGGGCCAAGAGCTTTTTCAGCAGAG
GGTCGATTTCTCGATCTGAAAGCATACCTCTGCAATGCTGCAAGGATTCG
GACTGCGGTAACGAAAGCGAGTTTGACTGTGAGTGCAATCTGTGCACAAC
GCAGTGTCCAACAACCCAAAGGTCTGGTGGACAAGGATTCACGTCGTTTA
CAGTGGACTTGATGAAGACGCAAGGAACTTTTGACGCAAGTTATCAGATG
TATACTGTTCCGGATGAGCTAACCATTTCCTATGAAGGCCAAGTTGTGTT
CGGTACTGGCGGGTTGGTATCAGGGAGCAAGACTGTTGCTGTTAGCTACG
GCTCTAATTCATCGACAAGCACGGTAGTGACTGTTGAGGTGAATGCCCCA
CGATCTGGAACACTTTGGGACGTGTCCGTTTCTTGCCCTCCGTGA