Gchil1592.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1592.t1
Unique NameGchil1592.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1111455..1112000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1396.DJ87_2580
Preferred nameypkP
PFAMsAcyltransferase
Max annot lvl91061|Bacilli
KEGG rclassRC00004,RC00037,RC00039
KEGG koko:K00655
KEGG ReactionR02241,R09381
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
KEGG ModuleM00089
Evalue1.26e-24
EggNOG OGsCOG0204@1|root,COG0204@2|Bacteria,1UMJA@1239|Firmicutes,4HD2E@91061|Bacilli,1ZEYG@1386|Bacillus
EC2.3.1.51
DescriptionBelongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1592Gchil1592Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1111455..1112000 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1592.t1.stop1Gchil1592.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1111455..1111457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1592.t1.CDS1Gchil1592.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1111455..1112000 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1592.t1.exon1Gchil1592.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1111455..1112000 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1592.t1.start1Gchil1592.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1111998..1112000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1592.t1Gchil1592.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1111455..1112000 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1592.t1 ID=Gchil1592.t1|Name=Gchil1592.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=182bp
MAAKGLHNTPRSPSLIISNLQSPLDTFILSFLQRPYLLLVPERAKRAPLV
GWMLRLAGMIFVSSDRRGQMAALIACTEALKNGKSVALFPEAVPRLDGVI
ASFPSAIFSAARKSGVPIVPVTIDGSYRVFEADRATVRRPSKPISVTVHK
PVTADPDDKKTALNVRDIIRSELPRELRGEP*
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spliced messenger RNA

>Gchil1592.t1 ID=Gchil1592.t1|Name=Gchil1592.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00004403_pilon:1111455..1112000- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCAAAGGGTCTACATAATACGCCAAGAAGCCCGTCTCTGATAAT
TTCCAATCTCCAGTCTCCTTTGGACACTTTCATTCTTTCCTTTTTGCAAC
GCCCATATCTGCTATTGGTTCCAGAACGCGCAAAGAGGGCACCCCTAGTC
GGATGGATGCTACGTTTGGCAGGCATGATTTTCGTTTCATCCGATCGTCG
AGGTCAGATGGCGGCTCTAATTGCATGCACAGAAGCCCTAAAGAATGGCA
AGAGCGTCGCACTTTTTCCAGAAGCTGTGCCTCGTCTGGATGGCGTAATC
GCATCGTTTCCGTCCGCGATCTTCTCTGCCGCTCGAAAATCCGGTGTTCC
TATTGTTCCGGTCACTATTGATGGCTCCTACAGGGTGTTTGAGGCCGATC
GAGCTACGGTGCGTCGTCCTTCGAAACCCATCTCTGTGACTGTGCACAAA
CCTGTCACGGCCGATCCGGATGATAAGAAAACGGCTCTCAACGTTCGCGA
TATCATCAGAAGTGAATTACCGCGAGAGTTGAGAGGGGAGCCGTAG
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protein sequence of Gchil1592.t1

>Gchil1592.t1 ID=Gchil1592.t1|Name=Gchil1592.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=182bp
MAAKGLHNTPRSPSLIISNLQSPLDTFILSFLQRPYLLLVPERAKRAPLV
GWMLRLAGMIFVSSDRRGQMAALIACTEALKNGKSVALFPEAVPRLDGVI
ASFPSAIFSAARKSGVPIVPVTIDGSYRVFEADRATVRRPSKPISVTVHK
PVTADPDDKKTALNVRDIIRSELPRELRGEP*
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mRNA from alignment at tig00004403_pilon:1111455..1112000-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1592.t1 ID=Gchil1592.t1|Name=Gchil1592.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00004403_pilon:1111455..1112000- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCAAAGGGTCTACATAATACGCCAAGAAGCCCGTCTCTGATAAT
TTCCAATCTCCAGTCTCCTTTGGACACTTTCATTCTTTCCTTTTTGCAAC
GCCCATATCTGCTATTGGTTCCAGAACGCGCAAAGAGGGCACCCCTAGTC
GGATGGATGCTACGTTTGGCAGGCATGATTTTCGTTTCATCCGATCGTCG
AGGTCAGATGGCGGCTCTAATTGCATGCACAGAAGCCCTAAAGAATGGCA
AGAGCGTCGCACTTTTTCCAGAAGCTGTGCCTCGTCTGGATGGCGTAATC
GCATCGTTTCCGTCCGCGATCTTCTCTGCCGCTCGAAAATCCGGTGTTCC
TATTGTTCCGGTCACTATTGATGGCTCCTACAGGGTGTTTGAGGCCGATC
GAGCTACGGTGCGTCGTCCTTCGAAACCCATCTCTGTGACTGTGCACAAA
CCTGTCACGGCCGATCCGGATGATAAGAAAACGGCTCTCAACGTTCGCGA
TATCATCAGAAGTGAATTACCGCGAGAGTTGAGAGGGGAGCCGTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:1111455..1112000-

>Gchil1592.t1 ID=Gchil1592.t1|Name=Gchil1592.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=546bp|location=Sequence derived from alignment at tig00004403_pilon:1111455..1112000- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCAAAGGGTCTACATAATACGCCAAGAAGCCCGTCTCTGATAAT
TTCCAATCTCCAGTCTCCTTTGGACACTTTCATTCTTTCCTTTTTGCAAC
GCCCATATCTGCTATTGGTTCCAGAACGCGCAAAGAGGGCACCCCTAGTC
GGATGGATGCTACGTTTGGCAGGCATGATTTTCGTTTCATCCGATCGTCG
AGGTCAGATGGCGGCTCTAATTGCATGCACAGAAGCCCTAAAGAATGGCA
AGAGCGTCGCACTTTTTCCAGAAGCTGTGCCTCGTCTGGATGGCGTAATC
GCATCGTTTCCGTCCGCGATCTTCTCTGCCGCTCGAAAATCCGGTGTTCC
TATTGTTCCGGTCACTATTGATGGCTCCTACAGGGTGTTTGAGGCCGATC
GAGCTACGGTGCGTCGTCCTTCGAAACCCATCTCTGTGACTGTGCACAAA
CCTGTCACGGCCGATCCGGATGATAAGAAAACGGCTCTCAACGTTCGCGA
TATCATCAGAAGTGAATTACCGCGAGAGTTGAGAGGGGAGCCGTAG
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