Gchil1590.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1590.t1
Unique Name	Gchil1590.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	637

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1108025..1109935 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1590	Gchil1590	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1108025..1109935 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1590.t1.start1	Gchil1590.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1108025..1108027 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1590.t1.CDS1	Gchil1590.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1108025..1109935 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1590.t1.exon1	Gchil1590.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1108025..1109935 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1590.t1.stop1	Gchil1590.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1109933..1109935 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1590.t1	Gchil1590.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1108025..1109935 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1108025..1109935+
coding sequence from alignment at tig00004403_pilon:1108025..1109935+

mRNA sequence

>Gchil1590.t1 ID=Gchil1590.t1|Name=Gchil1590.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=637bp
MVVDRFQASPARARSGTASRIPRPSARRSSRGGDEPTTPSRSNTAASPRL
SSRAPSESTTPSRSTALPHPRRSSRSAKDPKTPSRHGVSTPTRRQTAAAE
SGIPNPRRVSGVGNVVPRANTASRLRTPGKDRSDPSRLPTKSPRALPDRG
TPTLSSVAPSPSRAPLQASPYARRTSTGGARNNVNRKLNMSDANLRRASG
ASSTRLASQKQRGTKSFLADRRDSSSAASRRESLTGNDNLTARRESLAAR
RESLAARRESLAARREALKAGRESLPDRRDPTSDLTEPNSARRDSITARR
DSITTGRRDSITTGRRDSLTARRDSLTARRDSLTARRDSLTARRDQPSAR
RDQPSARRDQPSARRDSLTTGHDSLAARRDSLTTGHDSLAARRDSLNSRR
DSAGRRISSGSARLQAGLTALESFRAARRASLQAQELDGENTEPAPLQTE
VPKEERPELPSDNITYPDRLDPIVPSSYPSRKGRTISERFNDSDINLENV
ERLRRSLGGRRSIGPNEEMPKEVPQLRRNSLESYMDDGQLREDVTPEGVD
GITKGVENLHCANDSIDHDQASRRQRSPLRSIEANTDVPKATEWLSKRYS
TSNGEKRRSSILVPDIDDEKAGWPTDDEDVEDLGAW*

spliced messenger RNA

>Gchil1590.t1 ID=Gchil1590.t1|Name=Gchil1590.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1911bp|location=Sequence derived from alignment at tig00004403_pilon:1108025..1109935+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTCGATCGCTTCCAAGCTTCGCCCGCCCGCGCGCGTAGCGGTAC
CGCCTCTCGCATTCCACGTCCCTCTGCTCGACGTTCGTCTCGCGGCGGCG
ACGAGCCCACCACTCCCTCCCGTTCAAACACCGCCGCTTCCCCCCGACTC
TCATCGCGTGCCCCGAGCGAAAGCACTACTCCGTCTCGTTCCACCGCCCT
CCCCCATCCGCGCCGCTCCTCACGGAGTGCTAAGGACCCCAAAACGCCTT
CCAGACATGGTGTCTCAACGCCCACCCGTCGCCAGACCGCCGCAGCTGAA
AGCGGCATTCCGAACCCTCGTCGTGTCTCCGGCGTTGGCAATGTCGTCCC
TCGCGCAAACACTGCATCTAGGCTTCGTACCCCCGGAAAGGACCGATCCG
ACCCTTCCAGGCTACCAACAAAGTCTCCGCGTGCCTTACCCGACCGCGGC
ACACCTACGCTGTCAAGCGTTGCCCCCAGCCCCAGTCGAGCCCCGTTGCA
AGCCAGCCCATATGCACGTCGCACCAGTACTGGCGGCGCTCGAAATAACG
TCAATCGCAAACTCAATATGAGCGACGCCAATCTACGCAGGGCCTCAGGC
GCATCCTCTACACGTCTCGCCTCCCAAAAACAACGAGGCACAAAATCATT
TCTTGCGGACCGAAGGGACTCGTCTTCTGCGGCCAGTCGCAGAGAAAGTT
TGACTGGAAACGACAATCTCACCGCTCGCAGGGAGAGCCTTGCGGCGAGG
CGTGAAAGTCTGGCAGCCAGACGCGAAAGTCTTGCTGCCAGGCGAGAAGC
GCTTAAGGCTGGGAGAGAGAGCCTTCCGGACAGACGAGATCCTACTTCTG
ACCTAACGGAACCCAACTCGGCCAGGAGAGATAGTATTACTGCTAGAAGG
GACAGCATTACTACTGGTAGAAGGGACAGCATTACTACTGGTAGAAGAGA
CAGTCTTACTGCCAGGAGAGACAGTCTGACGGCCAGGAGGGACAGTCTCA
CTGCCAGAAGAGACAGTCTCACAGCTCGGCGAGATCAACCATCTGCTCGC
CGCGACCAACCATCTGCTCGCCGCGATCAACCATCTGCTCGCCGCGACAG
CCTTACAACTGGTCATGATAGCTTGGCCGCTCGTCGCGATAGCCTTACAA
CCGGTCATGATAGCTTGGCCGCTCGTCGCGATAGCCTTAATTCTAGGCGC
GATAGCGCTGGTAGACGAATTAGTTCAGGCTCCGCGAGGCTTCAAGCAGG
ATTAACTGCTCTCGAGTCTTTCAGAGCAGCCCGAAGAGCATCTTTACAGG
CACAGGAGCTCGACGGTGAGAACACGGAACCCGCTCCGTTGCAGACAGAG
GTTCCGAAGGAAGAAAGGCCGGAGTTACCGAGTGATAATATCACGTATCC
CGATCGCCTTGACCCCATTGTCCCAAGTAGCTATCCAAGTCGCAAGGGTC
GCACGATCAGTGAGAGGTTTAACGACTCAGATATCAACCTTGAGAATGTG
GAGCGCCTCCGCCGCTCGCTCGGAGGCCGAAGGTCGATTGGTCCAAATGA
GGAAATGCCCAAGGAAGTCCCACAACTGCGAAGAAATAGTCTCGAGTCTT
ATATGGACGATGGTCAGTTGCGAGAGGATGTCACACCGGAAGGAGTAGAT
GGGATCACCAAAGGCGTAGAGAATCTTCATTGCGCAAATGATAGTATCGA
TCATGATCAAGCCTCTCGCCGTCAGCGATCGCCACTCAGATCCATTGAAG
CAAACACAGATGTCCCTAAAGCGACGGAGTGGCTTTCAAAGAGATATAGT
ACGTCGAATGGAGAGAAAAGACGCTCCAGTATTTTGGTTCCCGACATCGA
CGATGAAAAGGCTGGGTGGCCTACAGATGACGAGGACGTTGAAGATCTTG
GAGCTTGGTAA

protein sequence of Gchil1590.t1

>Gchil1590.t1 ID=Gchil1590.t1|Name=Gchil1590.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=637bp
MVVDRFQASPARARSGTASRIPRPSARRSSRGGDEPTTPSRSNTAASPRL
SSRAPSESTTPSRSTALPHPRRSSRSAKDPKTPSRHGVSTPTRRQTAAAE
SGIPNPRRVSGVGNVVPRANTASRLRTPGKDRSDPSRLPTKSPRALPDRG
TPTLSSVAPSPSRAPLQASPYARRTSTGGARNNVNRKLNMSDANLRRASG
ASSTRLASQKQRGTKSFLADRRDSSSAASRRESLTGNDNLTARRESLAAR
RESLAARRESLAARREALKAGRESLPDRRDPTSDLTEPNSARRDSITARR
DSITTGRRDSITTGRRDSLTARRDSLTARRDSLTARRDSLTARRDQPSAR
RDQPSARRDQPSARRDSLTTGHDSLAARRDSLTTGHDSLAARRDSLNSRR
DSAGRRISSGSARLQAGLTALESFRAARRASLQAQELDGENTEPAPLQTE
VPKEERPELPSDNITYPDRLDPIVPSSYPSRKGRTISERFNDSDINLENV
ERLRRSLGGRRSIGPNEEMPKEVPQLRRNSLESYMDDGQLREDVTPEGVD
GITKGVENLHCANDSIDHDQASRRQRSPLRSIEANTDVPKATEWLSKRYS
TSNGEKRRSSILVPDIDDEKAGWPTDDEDVEDLGAW*

mRNA from alignment at tig00004403_pilon:1108025..1109935+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1590.t1 ID=Gchil1590.t1|Name=Gchil1590.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1911bp|location=Sequence derived from alignment at tig00004403_pilon:1108025..1109935+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGTCGATCGCTTCCAAGCTTCGCCCGCCCGCGCGCGTAGCGGTAC
CGCCTCTCGCATTCCACGTCCCTCTGCTCGACGTTCGTCTCGCGGCGGCG
ACGAGCCCACCACTCCCTCCCGTTCAAACACCGCCGCTTCCCCCCGACTC
TCATCGCGTGCCCCGAGCGAAAGCACTACTCCGTCTCGTTCCACCGCCCT
CCCCCATCCGCGCCGCTCCTCACGGAGTGCTAAGGACCCCAAAACGCCTT
CCAGACATGGTGTCTCAACGCCCACCCGTCGCCAGACCGCCGCAGCTGAA
AGCGGCATTCCGAACCCTCGTCGTGTCTCCGGCGTTGGCAATGTCGTCCC
TCGCGCAAACACTGCATCTAGGCTTCGTACCCCCGGAAAGGACCGATCCG
ACCCTTCCAGGCTACCAACAAAGTCTCCGCGTGCCTTACCCGACCGCGGC
ACACCTACGCTGTCAAGCGTTGCCCCCAGCCCCAGTCGAGCCCCGTTGCA
AGCCAGCCCATATGCACGTCGCACCAGTACTGGCGGCGCTCGAAATAACG
TCAATCGCAAACTCAATATGAGCGACGCCAATCTACGCAGGGCCTCAGGC
GCATCCTCTACACGTCTCGCCTCCCAAAAACAACGAGGCACAAAATCATT
TCTTGCGGACCGAAGGGACTCGTCTTCTGCGGCCAGTCGCAGAGAAAGTT
TGACTGGAAACGACAATCTCACCGCTCGCAGGGAGAGCCTTGCGGCGAGG
CGTGAAAGTCTGGCAGCCAGACGCGAAAGTCTTGCTGCCAGGCGAGAAGC
GCTTAAGGCTGGGAGAGAGAGCCTTCCGGACAGACGAGATCCTACTTCTG
ACCTAACGGAACCCAACTCGGCCAGGAGAGATAGTATTACTGCTAGAAGG
GACAGCATTACTACTGGTAGAAGGGACAGCATTACTACTGGTAGAAGAGA
CAGTCTTACTGCCAGGAGAGACAGTCTGACGGCCAGGAGGGACAGTCTCA
CTGCCAGAAGAGACAGTCTCACAGCTCGGCGAGATCAACCATCTGCTCGC
CGCGACCAACCATCTGCTCGCCGCGATCAACCATCTGCTCGCCGCGACAG
CCTTACAACTGGTCATGATAGCTTGGCCGCTCGTCGCGATAGCCTTACAA
CCGGTCATGATAGCTTGGCCGCTCGTCGCGATAGCCTTAATTCTAGGCGC
GATAGCGCTGGTAGACGAATTAGTTCAGGCTCCGCGAGGCTTCAAGCAGG
ATTAACTGCTCTCGAGTCTTTCAGAGCAGCCCGAAGAGCATCTTTACAGG
CACAGGAGCTCGACGGTGAGAACACGGAACCCGCTCCGTTGCAGACAGAG
GTTCCGAAGGAAGAAAGGCCGGAGTTACCGAGTGATAATATCACGTATCC
CGATCGCCTTGACCCCATTGTCCCAAGTAGCTATCCAAGTCGCAAGGGTC
GCACGATCAGTGAGAGGTTTAACGACTCAGATATCAACCTTGAGAATGTG
GAGCGCCTCCGCCGCTCGCTCGGAGGCCGAAGGTCGATTGGTCCAAATGA
GGAAATGCCCAAGGAAGTCCCACAACTGCGAAGAAATAGTCTCGAGTCTT
ATATGGACGATGGTCAGTTGCGAGAGGATGTCACACCGGAAGGAGTAGAT
GGGATCACCAAAGGCGTAGAGAATCTTCATTGCGCAAATGATAGTATCGA
TCATGATCAAGCCTCTCGCCGTCAGCGATCGCCACTCAGATCCATTGAAG
CAAACACAGATGTCCCTAAAGCGACGGAGTGGCTTTCAAAGAGATATAGT
ACGTCGAATGGAGAGAAAAGACGCTCCAGTATTTTGGTTCCCGACATCGA
CGATGAAAAGGCTGGGTGGCCTACAGATGACGAGGACGTTGAAGATCTTG
GAGCTTGGTAA

Coding sequence (CDS) from alignment at tig00004403_pilon:1108025..1109935+

>Gchil1590.t1 ID=Gchil1590.t1|Name=Gchil1590.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1911bp|location=Sequence derived from alignment at tig00004403_pilon:1108025..1109935+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGTCGATCGCTTCCAAGCTTCGCCCGCCCGCGCGCGTAGCGGTAC
CGCCTCTCGCATTCCACGTCCCTCTGCTCGACGTTCGTCTCGCGGCGGCG
ACGAGCCCACCACTCCCTCCCGTTCAAACACCGCCGCTTCCCCCCGACTC
TCATCGCGTGCCCCGAGCGAAAGCACTACTCCGTCTCGTTCCACCGCCCT
CCCCCATCCGCGCCGCTCCTCACGGAGTGCTAAGGACCCCAAAACGCCTT
CCAGACATGGTGTCTCAACGCCCACCCGTCGCCAGACCGCCGCAGCTGAA
AGCGGCATTCCGAACCCTCGTCGTGTCTCCGGCGTTGGCAATGTCGTCCC
TCGCGCAAACACTGCATCTAGGCTTCGTACCCCCGGAAAGGACCGATCCG
ACCCTTCCAGGCTACCAACAAAGTCTCCGCGTGCCTTACCCGACCGCGGC
ACACCTACGCTGTCAAGCGTTGCCCCCAGCCCCAGTCGAGCCCCGTTGCA
AGCCAGCCCATATGCACGTCGCACCAGTACTGGCGGCGCTCGAAATAACG
TCAATCGCAAACTCAATATGAGCGACGCCAATCTACGCAGGGCCTCAGGC
GCATCCTCTACACGTCTCGCCTCCCAAAAACAACGAGGCACAAAATCATT
TCTTGCGGACCGAAGGGACTCGTCTTCTGCGGCCAGTCGCAGAGAAAGTT
TGACTGGAAACGACAATCTCACCGCTCGCAGGGAGAGCCTTGCGGCGAGG
CGTGAAAGTCTGGCAGCCAGACGCGAAAGTCTTGCTGCCAGGCGAGAAGC
GCTTAAGGCTGGGAGAGAGAGCCTTCCGGACAGACGAGATCCTACTTCTG
ACCTAACGGAACCCAACTCGGCCAGGAGAGATAGTATTACTGCTAGAAGG
GACAGCATTACTACTGGTAGAAGGGACAGCATTACTACTGGTAGAAGAGA
CAGTCTTACTGCCAGGAGAGACAGTCTGACGGCCAGGAGGGACAGTCTCA
CTGCCAGAAGAGACAGTCTCACAGCTCGGCGAGATCAACCATCTGCTCGC
CGCGACCAACCATCTGCTCGCCGCGATCAACCATCTGCTCGCCGCGACAG
CCTTACAACTGGTCATGATAGCTTGGCCGCTCGTCGCGATAGCCTTACAA
CCGGTCATGATAGCTTGGCCGCTCGTCGCGATAGCCTTAATTCTAGGCGC
GATAGCGCTGGTAGACGAATTAGTTCAGGCTCCGCGAGGCTTCAAGCAGG
ATTAACTGCTCTCGAGTCTTTCAGAGCAGCCCGAAGAGCATCTTTACAGG
CACAGGAGCTCGACGGTGAGAACACGGAACCCGCTCCGTTGCAGACAGAG
GTTCCGAAGGAAGAAAGGCCGGAGTTACCGAGTGATAATATCACGTATCC
CGATCGCCTTGACCCCATTGTCCCAAGTAGCTATCCAAGTCGCAAGGGTC
GCACGATCAGTGAGAGGTTTAACGACTCAGATATCAACCTTGAGAATGTG
GAGCGCCTCCGCCGCTCGCTCGGAGGCCGAAGGTCGATTGGTCCAAATGA
GGAAATGCCCAAGGAAGTCCCACAACTGCGAAGAAATAGTCTCGAGTCTT
ATATGGACGATGGTCAGTTGCGAGAGGATGTCACACCGGAAGGAGTAGAT
GGGATCACCAAAGGCGTAGAGAATCTTCATTGCGCAAATGATAGTATCGA
TCATGATCAAGCCTCTCGCCGTCAGCGATCGCCACTCAGATCCATTGAAG
CAAACACAGATGTCCCTAAAGCGACGGAGTGGCTTTCAAAGAGATATAGT
ACGTCGAATGGAGAGAAAAGACGCTCCAGTATTTTGGTTCCCGACATCGA
CGATGAAAAGGCTGGGTGGCCTACAGATGACGAGGACGTTGAAGATCTTG
GAGCTTGGTAA