Gchil1580.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1580.t1
Unique Name	Gchil1580.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	692

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1009818..1011893 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1580	Gchil1580	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1009818..1011893 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1580.t1.start1	Gchil1580.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1009818..1009820 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1580.t1.CDS1	Gchil1580.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1009818..1011893 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1580.t1.exon1	Gchil1580.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1009818..1011893 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1580.t1.stop1	Gchil1580.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1011891..1011893 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1580.t1	Gchil1580.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1009818..1011893 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1009818..1011893+
coding sequence from alignment at tig00004403_pilon:1009818..1011893+

mRNA sequence

>Gchil1580.t1 ID=Gchil1580.t1|Name=Gchil1580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=692bp
MSLSDPHPSDPDLVQRTHHLSDDASTARRVVTDTPHRAHFVRALLPPPSS
HMLHHNCASITQFLRPVTLPIDCVPESTDAAFKPHANLLRRVTLHHFELN
RYLFAYKPLARVHAVMAATLLGPAHLDSNNFPMSPLLRTAVMYLAGNSYR
NVYVMTYAAQLKSIHRSTPPAQGIMPSVLLKGLHLPKSQLIALDYAQQLL
SDDYAVSDATSKRFIDTQPNDASDLDRYIAATCAYGAFLSSLTSTLDLEL
THAAIQYASTNLQGLPWKSSSAPLNVGFTDDELDQFGSSNANSTFGAKPK
PMKERFSLHNNYHRHSQNAKSRSRAVRKVSHFLSYSLMAPKIIGDVNRIT
KSWMSSAQIPLPGELFECNDFICHAFGFEPFYFSTQAMASESMRRAFLFG
CTELLFSERDVPRRLKFVLCYVLSSGRERQRIDTEHTKSFERQGLHNGRS
ITSVYKQRPYDALSIMSAHAAYLACKYGSCAAELVAATDVSRVRGAMERY
NNRCDLNMHTRLVDFPLPKRDCAAVLLAHALLQESPCIPEEELFTFEACF
GLSKDANQASRNSRRAFLEVLGTSCMWSSLERYATGVLAFDIDCTSNLVF
GKGRAEPTITEFCQSIEGKKIGLSLAVGDDGKLVRTRSDPKATRAQSLRS
AARSKKRLHRKRTSSVLSTGLRVARMFSCEELLSKESPAVA*

spliced messenger RNA

>Gchil1580.t1 ID=Gchil1580.t1|Name=Gchil1580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2076bp|location=Sequence derived from alignment at tig00004403_pilon:1009818..1011893+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTCTCCGATCCGCATCCCTCCGACCCGGACCTCGTGCAACGAAC
CCATCACCTGTCCGATGACGCGTCCACCGCGCGTCGCGTCGTCACCGACA
CCCCGCATCGTGCCCACTTCGTACGCGCACTGCTTCCGCCCCCGTCCTCG
CATATGCTACATCACAACTGCGCCTCCATCACTCAGTTCTTGCGCCCTGT
CACGCTCCCCATCGACTGTGTGCCTGAATCCACCGACGCCGCGTTCAAGC
CCCATGCTAACTTGCTGCGCAGGGTCACCCTGCATCACTTTGAGCTCAAT
CGCTACCTCTTCGCGTACAAGCCCCTGGCTCGTGTGCACGCCGTCATGGC
CGCCACATTGCTTGGACCCGCCCATCTCGATTCCAACAACTTTCCCATGT
CCCCGCTGCTGCGCACCGCTGTCATGTACCTTGCCGGCAATTCCTACCGC
AACGTGTACGTTATGACCTACGCAGCTCAACTCAAAAGCATTCACCGTTC
CACACCGCCCGCCCAAGGAATCATGCCCTCTGTGCTCTTGAAGGGGCTTC
ATCTCCCCAAATCGCAACTTATCGCGCTTGATTACGCCCAACAATTGCTC
TCTGACGATTATGCCGTGTCAGACGCAACAAGCAAGCGTTTTATCGATAC
CCAACCGAACGATGCATCTGACCTAGATCGATACATTGCTGCCACCTGTG
CTTACGGCGCCTTTCTGTCAAGTCTCACCAGCACTCTGGACCTCGAGCTC
ACTCACGCCGCCATTCAGTATGCCTCCACGAACTTGCAAGGTCTGCCGTG
GAAGTCCAGCTCTGCGCCGTTGAACGTTGGCTTTACCGATGATGAGCTTG
ATCAATTTGGTTCCTCGAACGCCAATTCTACCTTTGGCGCCAAACCAAAG
CCGATGAAAGAACGTTTCAGCCTTCACAACAACTACCATCGTCACAGTCA
AAACGCCAAGAGTCGCTCTCGTGCCGTTCGCAAAGTATCACATTTTCTTT
CGTACTCTTTAATGGCACCAAAGATTATCGGCGACGTCAACCGAATTACG
AAGAGCTGGATGAGCAGTGCCCAAATTCCACTGCCCGGCGAGCTGTTTGA
GTGTAATGATTTCATCTGTCATGCGTTTGGCTTCGAACCGTTTTACTTTT
CCACGCAGGCAATGGCTAGCGAATCCATGAGACGAGCCTTTCTTTTCGGA
TGCACAGAGCTTTTGTTTAGCGAAAGAGATGTTCCAAGACGTCTCAAGTT
TGTTCTCTGCTATGTGCTGTCTTCTGGACGAGAACGCCAAAGAATAGACA
CCGAACACACAAAGAGCTTCGAGCGACAGGGATTGCATAACGGCCGGTCA
ATCACCTCTGTATACAAGCAAAGGCCTTATGATGCCTTGAGCATCATGTC
GGCGCATGCGGCGTATCTCGCTTGTAAATACGGCTCGTGTGCCGCAGAAC
TCGTTGCCGCCACTGACGTCAGTCGTGTGCGGGGCGCGATGGAAAGATAT
AATAATCGATGCGACCTTAACATGCATACTCGTCTTGTAGACTTTCCACT
TCCCAAGAGAGACTGTGCGGCAGTCCTGTTAGCTCACGCGCTGCTGCAGG
AGTCACCATGCATCCCGGAAGAAGAACTGTTCACCTTTGAGGCTTGTTTT
GGTTTATCAAAGGACGCTAATCAAGCGAGCAGAAATAGCAGGCGGGCCTT
TCTGGAGGTGCTCGGAACGTCTTGTATGTGGAGTTCGTTGGAAAGATACG
CGACGGGTGTGCTGGCGTTTGACATTGATTGTACGTCCAATTTGGTGTTT
GGGAAGGGGAGGGCGGAGCCCACTATCACTGAGTTTTGTCAAAGTATAGA
AGGTAAGAAAATTGGCTTAAGCTTAGCTGTTGGCGATGACGGAAAATTGG
TTAGAACTCGCTCCGACCCAAAAGCCACGAGAGCTCAATCTCTTCGAAGC
GCTGCGAGGAGTAAGAAAAGGCTGCACAGAAAGAGAACTAGCTCTGTTTT
GAGCACAGGACTGCGGGTGGCTCGGATGTTTAGTTGTGAGGAATTGCTCT
CCAAAGAAAGTCCGGCAGTTGCATAG

protein sequence of Gchil1580.t1

>Gchil1580.t1 ID=Gchil1580.t1|Name=Gchil1580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=692bp
MSLSDPHPSDPDLVQRTHHLSDDASTARRVVTDTPHRAHFVRALLPPPSS
HMLHHNCASITQFLRPVTLPIDCVPESTDAAFKPHANLLRRVTLHHFELN
RYLFAYKPLARVHAVMAATLLGPAHLDSNNFPMSPLLRTAVMYLAGNSYR
NVYVMTYAAQLKSIHRSTPPAQGIMPSVLLKGLHLPKSQLIALDYAQQLL
SDDYAVSDATSKRFIDTQPNDASDLDRYIAATCAYGAFLSSLTSTLDLEL
THAAIQYASTNLQGLPWKSSSAPLNVGFTDDELDQFGSSNANSTFGAKPK
PMKERFSLHNNYHRHSQNAKSRSRAVRKVSHFLSYSLMAPKIIGDVNRIT
KSWMSSAQIPLPGELFECNDFICHAFGFEPFYFSTQAMASESMRRAFLFG
CTELLFSERDVPRRLKFVLCYVLSSGRERQRIDTEHTKSFERQGLHNGRS
ITSVYKQRPYDALSIMSAHAAYLACKYGSCAAELVAATDVSRVRGAMERY
NNRCDLNMHTRLVDFPLPKRDCAAVLLAHALLQESPCIPEEELFTFEACF
GLSKDANQASRNSRRAFLEVLGTSCMWSSLERYATGVLAFDIDCTSNLVF
GKGRAEPTITEFCQSIEGKKIGLSLAVGDDGKLVRTRSDPKATRAQSLRS
AARSKKRLHRKRTSSVLSTGLRVARMFSCEELLSKESPAVA*

mRNA from alignment at tig00004403_pilon:1009818..1011893+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1580.t1 ID=Gchil1580.t1|Name=Gchil1580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2076bp|location=Sequence derived from alignment at tig00004403_pilon:1009818..1011893+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCTCTCCGATCCGCATCCCTCCGACCCGGACCTCGTGCAACGAAC
CCATCACCTGTCCGATGACGCGTCCACCGCGCGTCGCGTCGTCACCGACA
CCCCGCATCGTGCCCACTTCGTACGCGCACTGCTTCCGCCCCCGTCCTCG
CATATGCTACATCACAACTGCGCCTCCATCACTCAGTTCTTGCGCCCTGT
CACGCTCCCCATCGACTGTGTGCCTGAATCCACCGACGCCGCGTTCAAGC
CCCATGCTAACTTGCTGCGCAGGGTCACCCTGCATCACTTTGAGCTCAAT
CGCTACCTCTTCGCGTACAAGCCCCTGGCTCGTGTGCACGCCGTCATGGC
CGCCACATTGCTTGGACCCGCCCATCTCGATTCCAACAACTTTCCCATGT
CCCCGCTGCTGCGCACCGCTGTCATGTACCTTGCCGGCAATTCCTACCGC
AACGTGTACGTTATGACCTACGCAGCTCAACTCAAAAGCATTCACCGTTC
CACACCGCCCGCCCAAGGAATCATGCCCTCTGTGCTCTTGAAGGGGCTTC
ATCTCCCCAAATCGCAACTTATCGCGCTTGATTACGCCCAACAATTGCTC
TCTGACGATTATGCCGTGTCAGACGCAACAAGCAAGCGTTTTATCGATAC
CCAACCGAACGATGCATCTGACCTAGATCGATACATTGCTGCCACCTGTG
CTTACGGCGCCTTTCTGTCAAGTCTCACCAGCACTCTGGACCTCGAGCTC
ACTCACGCCGCCATTCAGTATGCCTCCACGAACTTGCAAGGTCTGCCGTG
GAAGTCCAGCTCTGCGCCGTTGAACGTTGGCTTTACCGATGATGAGCTTG
ATCAATTTGGTTCCTCGAACGCCAATTCTACCTTTGGCGCCAAACCAAAG
CCGATGAAAGAACGTTTCAGCCTTCACAACAACTACCATCGTCACAGTCA
AAACGCCAAGAGTCGCTCTCGTGCCGTTCGCAAAGTATCACATTTTCTTT
CGTACTCTTTAATGGCACCAAAGATTATCGGCGACGTCAACCGAATTACG
AAGAGCTGGATGAGCAGTGCCCAAATTCCACTGCCCGGCGAGCTGTTTGA
GTGTAATGATTTCATCTGTCATGCGTTTGGCTTCGAACCGTTTTACTTTT
CCACGCAGGCAATGGCTAGCGAATCCATGAGACGAGCCTTTCTTTTCGGA
TGCACAGAGCTTTTGTTTAGCGAAAGAGATGTTCCAAGACGTCTCAAGTT
TGTTCTCTGCTATGTGCTGTCTTCTGGACGAGAACGCCAAAGAATAGACA
CCGAACACACAAAGAGCTTCGAGCGACAGGGATTGCATAACGGCCGGTCA
ATCACCTCTGTATACAAGCAAAGGCCTTATGATGCCTTGAGCATCATGTC
GGCGCATGCGGCGTATCTCGCTTGTAAATACGGCTCGTGTGCCGCAGAAC
TCGTTGCCGCCACTGACGTCAGTCGTGTGCGGGGCGCGATGGAAAGATAT
AATAATCGATGCGACCTTAACATGCATACTCGTCTTGTAGACTTTCCACT
TCCCAAGAGAGACTGTGCGGCAGTCCTGTTAGCTCACGCGCTGCTGCAGG
AGTCACCATGCATCCCGGAAGAAGAACTGTTCACCTTTGAGGCTTGTTTT
GGTTTATCAAAGGACGCTAATCAAGCGAGCAGAAATAGCAGGCGGGCCTT
TCTGGAGGTGCTCGGAACGTCTTGTATGTGGAGTTCGTTGGAAAGATACG
CGACGGGTGTGCTGGCGTTTGACATTGATTGTACGTCCAATTTGGTGTTT
GGGAAGGGGAGGGCGGAGCCCACTATCACTGAGTTTTGTCAAAGTATAGA
AGGTAAGAAAATTGGCTTAAGCTTAGCTGTTGGCGATGACGGAAAATTGG
TTAGAACTCGCTCCGACCCAAAAGCCACGAGAGCTCAATCTCTTCGAAGC
GCTGCGAGGAGTAAGAAAAGGCTGCACAGAAAGAGAACTAGCTCTGTTTT
GAGCACAGGACTGCGGGTGGCTCGGATGTTTAGTTGTGAGGAATTGCTCT
CCAAAGAAAGTCCGGCAGTTGCATAG

Coding sequence (CDS) from alignment at tig00004403_pilon:1009818..1011893+

>Gchil1580.t1 ID=Gchil1580.t1|Name=Gchil1580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2076bp|location=Sequence derived from alignment at tig00004403_pilon:1009818..1011893+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCTCTCCGATCCGCATCCCTCCGACCCGGACCTCGTGCAACGAAC
CCATCACCTGTCCGATGACGCGTCCACCGCGCGTCGCGTCGTCACCGACA
CCCCGCATCGTGCCCACTTCGTACGCGCACTGCTTCCGCCCCCGTCCTCG
CATATGCTACATCACAACTGCGCCTCCATCACTCAGTTCTTGCGCCCTGT
CACGCTCCCCATCGACTGTGTGCCTGAATCCACCGACGCCGCGTTCAAGC
CCCATGCTAACTTGCTGCGCAGGGTCACCCTGCATCACTTTGAGCTCAAT
CGCTACCTCTTCGCGTACAAGCCCCTGGCTCGTGTGCACGCCGTCATGGC
CGCCACATTGCTTGGACCCGCCCATCTCGATTCCAACAACTTTCCCATGT
CCCCGCTGCTGCGCACCGCTGTCATGTACCTTGCCGGCAATTCCTACCGC
AACGTGTACGTTATGACCTACGCAGCTCAACTCAAAAGCATTCACCGTTC
CACACCGCCCGCCCAAGGAATCATGCCCTCTGTGCTCTTGAAGGGGCTTC
ATCTCCCCAAATCGCAACTTATCGCGCTTGATTACGCCCAACAATTGCTC
TCTGACGATTATGCCGTGTCAGACGCAACAAGCAAGCGTTTTATCGATAC
CCAACCGAACGATGCATCTGACCTAGATCGATACATTGCTGCCACCTGTG
CTTACGGCGCCTTTCTGTCAAGTCTCACCAGCACTCTGGACCTCGAGCTC
ACTCACGCCGCCATTCAGTATGCCTCCACGAACTTGCAAGGTCTGCCGTG
GAAGTCCAGCTCTGCGCCGTTGAACGTTGGCTTTACCGATGATGAGCTTG
ATCAATTTGGTTCCTCGAACGCCAATTCTACCTTTGGCGCCAAACCAAAG
CCGATGAAAGAACGTTTCAGCCTTCACAACAACTACCATCGTCACAGTCA
AAACGCCAAGAGTCGCTCTCGTGCCGTTCGCAAAGTATCACATTTTCTTT
CGTACTCTTTAATGGCACCAAAGATTATCGGCGACGTCAACCGAATTACG
AAGAGCTGGATGAGCAGTGCCCAAATTCCACTGCCCGGCGAGCTGTTTGA
GTGTAATGATTTCATCTGTCATGCGTTTGGCTTCGAACCGTTTTACTTTT
CCACGCAGGCAATGGCTAGCGAATCCATGAGACGAGCCTTTCTTTTCGGA
TGCACAGAGCTTTTGTTTAGCGAAAGAGATGTTCCAAGACGTCTCAAGTT
TGTTCTCTGCTATGTGCTGTCTTCTGGACGAGAACGCCAAAGAATAGACA
CCGAACACACAAAGAGCTTCGAGCGACAGGGATTGCATAACGGCCGGTCA
ATCACCTCTGTATACAAGCAAAGGCCTTATGATGCCTTGAGCATCATGTC
GGCGCATGCGGCGTATCTCGCTTGTAAATACGGCTCGTGTGCCGCAGAAC
TCGTTGCCGCCACTGACGTCAGTCGTGTGCGGGGCGCGATGGAAAGATAT
AATAATCGATGCGACCTTAACATGCATACTCGTCTTGTAGACTTTCCACT
TCCCAAGAGAGACTGTGCGGCAGTCCTGTTAGCTCACGCGCTGCTGCAGG
AGTCACCATGCATCCCGGAAGAAGAACTGTTCACCTTTGAGGCTTGTTTT
GGTTTATCAAAGGACGCTAATCAAGCGAGCAGAAATAGCAGGCGGGCCTT
TCTGGAGGTGCTCGGAACGTCTTGTATGTGGAGTTCGTTGGAAAGATACG
CGACGGGTGTGCTGGCGTTTGACATTGATTGTACGTCCAATTTGGTGTTT
GGGAAGGGGAGGGCGGAGCCCACTATCACTGAGTTTTGTCAAAGTATAGA
AGGTAAGAAAATTGGCTTAAGCTTAGCTGTTGGCGATGACGGAAAATTGG
TTAGAACTCGCTCCGACCCAAAAGCCACGAGAGCTCAATCTCTTCGAAGC
GCTGCGAGGAGTAAGAAAAGGCTGCACAGAAAGAGAACTAGCTCTGTTTT
GAGCACAGGACTGCGGGTGGCTCGGATGTTTAGTTGTGAGGAATTGCTCT
CCAAAGAAAGTCCGGCAGTTGCATAG