Gchil1571.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1571.t1
Unique NameGchil1571.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:982792..983735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4920.XP_004196694.1
Preferred nameFPR3
PFAMsFKBP_C
Max annot lvl4751|Fungi
KEGG koko:K14826
GOsGO:0000003,GO:0000075,GO:0000412,GO:0000413,GO:0000414,GO:0000415,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006457,GO:0006464,GO:0006807,GO:0006996,GO:0007049,GO:0008144,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0016043,GO:0016569,GO:0016570,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019222,GO:0019538,GO:0022402,GO:0022414,GO:0022607,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0033043,GO:0033044,GO:0033313,GO:0034622,GO:0034728,GO:0036211,GO:0040020,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045786,GO:0045835,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051726,GO:0051783,GO:0051784,GO:0060255,GO:0061077,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1902275,GO:1903046,GO:1905268,GO:2000241,GO:2000242,GO:2001251
Evalue3.11e-25
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota,38CQE@33154|Opisthokonta,3NVTP@4751|Fungi,3QMYG@4890|Ascomycota,3RTUN@4891|Saccharomycetes,47AC2@766764|Debaryomycetaceae
EC5.2.1.8
DescriptionFK506-binding protein
COG categoryO
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1571Gchil1571Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 982792..983735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1571.t1Gchil1571.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 982792..983735 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1571.t1.start1Gchil1571.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 982792..982794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1571.t1.CDS1Gchil1571.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 982792..982875 +
Gchil1571.t1.CDS2Gchil1571.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 982959..983735 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1571.t1.exon1Gchil1571.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 982792..982875 +
Gchil1571.t1.exon2Gchil1571.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 982959..983735 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1571.t1.intron1Gchil1571.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 982876..982958 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1571.t1.stop1Gchil1571.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 983733..983735 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1571.t1 ID=Gchil1571.t1|Name=Gchil1571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=287bp
MTFVGVEIQPKNVVWIDASADHHVFLSNACLVKHPKKENARVILEIWKPE
NEEQPADDQESKRVAIAVLSACAENAKLDLPITSRLGLSIAGKSATGAIV
HVVGNEYEFSDDDDGEIELAPGMMGMQVVIGEADDHKNSSSDDDNDSMKD
DDLSNSEEEDEAKKKLVVRKQSKGLPVVNHRSGLKFQDIIIGHGKRVVPG
RNVAIKYTLRLENGKVIDKAEARKPFKFRLGVGECVKGFDIGVRGMREGG
ERHLIVPPDLAYGQHPPPGIPRNATLYFDVTVIKAF*
back to top

spliced messenger RNA

>Gchil1571.t1 ID=Gchil1571.t1|Name=Gchil1571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00004403_pilon:982792..983735+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTTGTTGGAGTTGAAATACAACCCAAGAATGTTGTTTGGATAGA
TGCATCTGCCGATCATCATGTATTCCTCAGTAACGCCTGTCTTGTCAAGC
ACCCAAAGAAGGAGAACGCTCGAGTTATTCTGGAAATCTGGAAGCCTGAA
AATGAAGAACAGCCCGCCGATGACCAAGAGTCGAAACGAGTTGCGATAGC
AGTTCTATCCGCATGCGCTGAAAACGCCAAACTTGATTTACCTATCACAT
CCCGACTTGGACTCTCTATCGCTGGAAAGTCGGCCACGGGAGCCATAGTT
CACGTTGTTGGAAACGAGTACGAATTCTCAGATGATGATGATGGAGAAAT
AGAACTAGCACCCGGTATGATGGGCATGCAGGTCGTGATTGGTGAGGCTG
ATGATCACAAAAACTCATCGTCAGATGATGACAACGATTCTATGAAAGAT
GATGATCTCTCCAATTCAGAGGAAGAAGACGAAGCGAAAAAGAAGCTCGT
CGTCAGAAAACAAAGCAAAGGTCTGCCGGTCGTTAATCATCGGTCTGGTC
TTAAGTTCCAAGATATTATTATCGGCCATGGAAAGAGGGTTGTACCTGGA
AGAAATGTAGCAATCAAGTACACTCTGAGACTGGAGAACGGAAAGGTCAT
TGACAAGGCAGAGGCACGAAAGCCATTCAAGTTTCGCCTAGGCGTAGGAG
AGTGTGTGAAGGGGTTTGATATCGGTGTGAGAGGTATGCGTGAAGGTGGA
GAACGTCATTTAATCGTTCCTCCAGATCTGGCATACGGTCAACACCCTCC
ACCTGGCATTCCACGGAACGCCACATTATACTTTGACGTCACTGTTATCA
AGGCATTTTGA
back to top

protein sequence of Gchil1571.t1

>Gchil1571.t1 ID=Gchil1571.t1|Name=Gchil1571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=287bp
MTFVGVEIQPKNVVWIDASADHHVFLSNACLVKHPKKENARVILEIWKPE
NEEQPADDQESKRVAIAVLSACAENAKLDLPITSRLGLSIAGKSATGAIV
HVVGNEYEFSDDDDGEIELAPGMMGMQVVIGEADDHKNSSSDDDNDSMKD
DDLSNSEEEDEAKKKLVVRKQSKGLPVVNHRSGLKFQDIIIGHGKRVVPG
RNVAIKYTLRLENGKVIDKAEARKPFKFRLGVGECVKGFDIGVRGMREGG
ERHLIVPPDLAYGQHPPPGIPRNATLYFDVTVIKAF*
back to top

mRNA from alignment at tig00004403_pilon:982792..983735+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1571.t1 ID=Gchil1571.t1|Name=Gchil1571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=944bp|location=Sequence derived from alignment at tig00004403_pilon:982792..983735+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTTTTGTTGGAGTTGAAATACAACCCAAGAATGTTGTTTGGATAGA
TGCATCTGCCGATCATCATGTATTCCTCAGTAACGTAAGTTTCGCAGACA
TGCATTTTATATTATCCCTATACTTTGTGCTAACCAACTGGTGTCGTTTT
TCTAATCTCTTACAAAGGCCTGTCTTGTCAAGCACCCAAAGAAGGAGAAC
GCTCGAGTTATTCTGGAAATCTGGAAGCCTGAAAATGAAGAACAGCCCGC
CGATGACCAAGAGTCGAAACGAGTTGCGATAGCAGTTCTATCCGCATGCG
CTGAAAACGCCAAACTTGATTTACCTATCACATCCCGACTTGGACTCTCT
ATCGCTGGAAAGTCGGCCACGGGAGCCATAGTTCACGTTGTTGGAAACGA
GTACGAATTCTCAGATGATGATGATGGAGAAATAGAACTAGCACCCGGTA
TGATGGGCATGCAGGTCGTGATTGGTGAGGCTGATGATCACAAAAACTCA
TCGTCAGATGATGACAACGATTCTATGAAAGATGATGATCTCTCCAATTC
AGAGGAAGAAGACGAAGCGAAAAAGAAGCTCGTCGTCAGAAAACAAAGCA
AAGGTCTGCCGGTCGTTAATCATCGGTCTGGTCTTAAGTTCCAAGATATT
ATTATCGGCCATGGAAAGAGGGTTGTACCTGGAAGAAATGTAGCAATCAA
GTACACTCTGAGACTGGAGAACGGAAAGGTCATTGACAAGGCAGAGGCAC
GAAAGCCATTCAAGTTTCGCCTAGGCGTAGGAGAGTGTGTGAAGGGGTTT
GATATCGGTGTGAGAGGTATGCGTGAAGGTGGAGAACGTCATTTAATCGT
TCCTCCAGATCTGGCATACGGTCAACACCCTCCACCTGGCATTCCACGGA
ACGCCACATTATACTTTGACGTCACTGTTATCAAGGCATTTTGA
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:982792..983735+

>Gchil1571.t1 ID=Gchil1571.t1|Name=Gchil1571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=861bp|location=Sequence derived from alignment at tig00004403_pilon:982792..983735+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTTTTGTTGGAGTTGAAATACAACCCAAGAATGTTGTTTGGATAGA
TGCATCTGCCGATCATCATGTATTCCTCAGTAACGCCTGTCTTGTCAAGC
ACCCAAAGAAGGAGAACGCTCGAGTTATTCTGGAAATCTGGAAGCCTGAA
AATGAAGAACAGCCCGCCGATGACCAAGAGTCGAAACGAGTTGCGATAGC
AGTTCTATCCGCATGCGCTGAAAACGCCAAACTTGATTTACCTATCACAT
CCCGACTTGGACTCTCTATCGCTGGAAAGTCGGCCACGGGAGCCATAGTT
CACGTTGTTGGAAACGAGTACGAATTCTCAGATGATGATGATGGAGAAAT
AGAACTAGCACCCGGTATGATGGGCATGCAGGTCGTGATTGGTGAGGCTG
ATGATCACAAAAACTCATCGTCAGATGATGACAACGATTCTATGAAAGAT
GATGATCTCTCCAATTCAGAGGAAGAAGACGAAGCGAAAAAGAAGCTCGT
CGTCAGAAAACAAAGCAAAGGTCTGCCGGTCGTTAATCATCGGTCTGGTC
TTAAGTTCCAAGATATTATTATCGGCCATGGAAAGAGGGTTGTACCTGGA
AGAAATGTAGCAATCAAGTACACTCTGAGACTGGAGAACGGAAAGGTCAT
TGACAAGGCAGAGGCACGAAAGCCATTCAAGTTTCGCCTAGGCGTAGGAG
AGTGTGTGAAGGGGTTTGATATCGGTGTGAGAGGTATGCGTGAAGGTGGA
GAACGTCATTTAATCGTTCCTCCAGATCTGGCATACGGTCAACACCCTCC
ACCTGGCATTCCACGGAACGCCACATTATACTTTGACGTCACTGTTATCA
AGGCATTTTGA
back to top