Gchil1570.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1570.t1
Unique NameGchil1570.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:980800..982136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708042.1
Preferred nametigA
PFAMsERp29,Thioredoxin
Max annot lvl2759|Eukaryota
KEGG koko:K09584
KEGG Pathwayko04141,map04141
GOsGO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006457,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0015035,GO:0015036,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0033554,GO:0034599,GO:0034975,GO:0034976,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051082,GO:0051716,GO:0055114,GO:0070887,GO:0140096
Evalue9.58e-66
EggNOG OGsCOG0526@1|root,KOG0191@2759|Eukaryota
EC5.3.4.1
Descriptioncell redox homeostasis
COG categoryCO
BRITEko00000,ko00001,ko01000,ko03110,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1570Gchil1570Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 980800..982136 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1570.t1Gchil1570.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 980800..982136 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1570.t1.stop1Gchil1570.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 980800..980802 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1570.t1.CDS1Gchil1570.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 980800..981366 -
Gchil1570.t1.CDS2Gchil1570.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 981443..981449 -
Gchil1570.t1.CDS3Gchil1570.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 981564..981916 -
Gchil1570.t1.CDS4Gchil1570.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 981984..982136 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1570.t1.exon1Gchil1570.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 980800..981366 -
Gchil1570.t1.exon2Gchil1570.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 981443..981449 -
Gchil1570.t1.exon3Gchil1570.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 981564..981916 -
Gchil1570.t1.exon4Gchil1570.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 981984..982136 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1570.t1.intron1Gchil1570.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 981367..981442 -
Gchil1570.t1.intron2Gchil1570.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 981450..981563 -
Gchil1570.t1.intron3Gchil1570.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 981917..981983 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1570.t1.start1Gchil1570.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 982134..982136 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1570.t1 ID=Gchil1570.t1|Name=Gchil1570.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=360bp
MTISSITLLAALISFSQAYYYKDVNAKDFDRLLDPEKASIMLEFYAPWCG
HCKSLAPEYEKLGSTFKRSKDVVIAQINADAHKELGDRFKVQGFPTLKWI
QKGSTFESAEDIKVARTASALLDFVIEKTGVQKSLKDVENNIVEFNPSSF
DIATKSPAHHTFVIFVEPSQACTTALQIWNKVGDLFSEDEHIVVAKVDGD
RYSALAAEQDVSMYPTFKYYGKGGTQKFEDELSSDSLMSFINDVTGMDVT
IDDGVLPSAGKILEISEQIQSFVKAKTEEQRVQLMDTCKVTVEKLNEKAK
EDYKYYSKVFSKISEKGMAYISKEKARLSSLLEDVDNIQRSQRRKFMKNL
NVLKEFTEL*
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spliced messenger RNA

>Gchil1570.t1 ID=Gchil1570.t1|Name=Gchil1570.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00004403_pilon:980800..982136- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCATTTCATCGATAACACTGCTTGCTGCCCTGATCTCCTTTAGTCA
GGCTTATTACTACAAAGATGTGAACGCCAAAGATTTCGACAGACTTCTCG
ATCCGGAAAAGGCGTCCATCATGCTAGAGTTTTATGCACCTTGGTGTGGT
CACTGCAAAAGTCTGGCACCAGAGTACGAGAAATTAGGCAGCACTTTTAA
GCGTTCTAAAGATGTCGTCATTGCACAGATTAATGCTGATGCGCACAAAG
AATTAGGAGATCGTTTCAAGGTTCAGGGATTCCCAACATTGAAATGGATT
CAGAAAGGATCTACGTTTGAGAGTGCTGAGGATATCAAAGTTGCGCGCAC
TGCCTCCGCTTTGCTTGACTTTGTCATCGAAAAGACTGGTGTGCAAAAGA
GCCTGAAGGATGTGGAAAATAATATTGTCGAATTCAACCCTAGCAGCTTT
GACATTGCGACGAAAAGCCCTGCTCATCACACTTTCGTGATTTTCGTCGA
ACCAAGTCAAGCTTGCACCACAGCGTTACAGATTTGGAACAAGGTCGGCG
ATCTTTTCTCGGAAGATGAACACATCGTCGTCGCCAAAGTGGACGGAGAC
AGGTATAGCGCGTTGGCTGCGGAACAAGACGTTTCGATGTACCCGACTTT
CAAGTACTATGGGAAGGGGGGTACTCAGAAGTTTGAAGATGAATTAAGCT
CAGACTCGCTCATGTCCTTCATCAACGACGTGACTGGAATGGATGTAACG
ATCGATGATGGGGTGCTTCCTTCGGCCGGCAAAATCCTTGAGATATCTGA
GCAAATTCAGTCTTTCGTCAAAGCCAAAACAGAGGAGCAACGAGTTCAAT
TAATGGATACATGCAAGGTGACCGTGGAAAAACTAAACGAGAAGGCAAAA
GAAGACTACAAGTACTACTCCAAGGTATTCTCGAAAATTTCTGAAAAGGG
GATGGCATATATCAGCAAAGAAAAAGCTCGGCTTTCTTCCCTTCTAGAAG
ATGTTGACAACATACAACGTTCCCAGCGAAGGAAGTTCATGAAGAACCTG
AACGTGTTGAAGGAATTCACTGAGCTTTGA
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protein sequence of Gchil1570.t1

>Gchil1570.t1 ID=Gchil1570.t1|Name=Gchil1570.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=360bp
MTISSITLLAALISFSQAYYYKDVNAKDFDRLLDPEKASIMLEFYAPWCG
HCKSLAPEYEKLGSTFKRSKDVVIAQINADAHKELGDRFKVQGFPTLKWI
QKGSTFESAEDIKVARTASALLDFVIEKTGVQKSLKDVENNIVEFNPSSF
DIATKSPAHHTFVIFVEPSQACTTALQIWNKVGDLFSEDEHIVVAKVDGD
RYSALAAEQDVSMYPTFKYYGKGGTQKFEDELSSDSLMSFINDVTGMDVT
IDDGVLPSAGKILEISEQIQSFVKAKTEEQRVQLMDTCKVTVEKLNEKAK
EDYKYYSKVFSKISEKGMAYISKEKARLSSLLEDVDNIQRSQRRKFMKNL
NVLKEFTEL*
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mRNA from alignment at tig00004403_pilon:980800..982136-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1570.t1 ID=Gchil1570.t1|Name=Gchil1570.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1337bp|location=Sequence derived from alignment at tig00004403_pilon:980800..982136- (Gracilaria chilensis NLEC103_M9 male)
ATGACCATTTCATCGATAACACTGCTTGCTGCCCTGATCTCCTTTAGTCA
GGCTTATTACTACAAAGATGTGAACGCCAAAGATTTCGACAGACTTCTCG
ATCCGGAAAAGGCGTCCATCATGCTAGAGTTTTATGCACCTTGGTGTGGT
CACGTAAGTTGCATATCCAGTACCAAAATGATCGAGACATATATGCATTT
TGTCTAACAAATCCTAAAAGTGCAAAAGTCTGGCACCAGAGTACGAGAAA
TTAGGCAGCACTTTTAAGCGTTCTAAAGATGTCGTCATTGCACAGATTAA
TGCTGATGCGCACAAAGAATTAGGAGATCGTTTCAAGGTTCAGGGATTCC
CAACATTGAAATGGATTCAGAAAGGATCTACGTTTGAGAGTGCTGAGGAT
ATCAAAGTTGCGCGCACTGCCTCCGCTTTGCTTGACTTTGTCATCGAAAA
GACTGGTGTGCAAAAGAGCCTGAAGGATGTGGAAAATAATATTGTCGAAT
TCAACCCTAGCAGCTTTGACATTGCGACGAAAAGCCCTGCTCATCACACT
TTCGTGATTTTCGTCGAACCAAGGTGAGTTATTCCGAAAGTTCCATTTGC
GGCCCCGAACGCTGAAAGAAGTGCCCTGTATTTCTTTATCTGACAGCATT
GTACAATATATCTCAACATCTGTTTTCCTGTTCTCAGTCAAGCTGTACGT
ATTCATTTCAAACCCGTCCCTCTACTATTACAATGGCTCTTGATACATAC
TGACTGATTGATGTATGTAGTGCACCACAGCGTTACAGATTTGGAACAAG
GTCGGCGATCTTTTCTCGGAAGATGAACACATCGTCGTCGCCAAAGTGGA
CGGAGACAGGTATAGCGCGTTGGCTGCGGAACAAGACGTTTCGATGTACC
CGACTTTCAAGTACTATGGGAAGGGGGGTACTCAGAAGTTTGAAGATGAA
TTAAGCTCAGACTCGCTCATGTCCTTCATCAACGACGTGACTGGAATGGA
TGTAACGATCGATGATGGGGTGCTTCCTTCGGCCGGCAAAATCCTTGAGA
TATCTGAGCAAATTCAGTCTTTCGTCAAAGCCAAAACAGAGGAGCAACGA
GTTCAATTAATGGATACATGCAAGGTGACCGTGGAAAAACTAAACGAGAA
GGCAAAAGAAGACTACAAGTACTACTCCAAGGTATTCTCGAAAATTTCTG
AAAAGGGGATGGCATATATCAGCAAAGAAAAAGCTCGGCTTTCTTCCCTT
CTAGAAGATGTTGACAACATACAACGTTCCCAGCGAAGGAAGTTCATGAA
GAACCTGAACGTGTTGAAGGAATTCACTGAGCTTTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:980800..982136-

>Gchil1570.t1 ID=Gchil1570.t1|Name=Gchil1570.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1080bp|location=Sequence derived from alignment at tig00004403_pilon:980800..982136- (Gracilaria chilensis NLEC103_M9 male)
ATGACCATTTCATCGATAACACTGCTTGCTGCCCTGATCTCCTTTAGTCA
GGCTTATTACTACAAAGATGTGAACGCCAAAGATTTCGACAGACTTCTCG
ATCCGGAAAAGGCGTCCATCATGCTAGAGTTTTATGCACCTTGGTGTGGT
CACTGCAAAAGTCTGGCACCAGAGTACGAGAAATTAGGCAGCACTTTTAA
GCGTTCTAAAGATGTCGTCATTGCACAGATTAATGCTGATGCGCACAAAG
AATTAGGAGATCGTTTCAAGGTTCAGGGATTCCCAACATTGAAATGGATT
CAGAAAGGATCTACGTTTGAGAGTGCTGAGGATATCAAAGTTGCGCGCAC
TGCCTCCGCTTTGCTTGACTTTGTCATCGAAAAGACTGGTGTGCAAAAGA
GCCTGAAGGATGTGGAAAATAATATTGTCGAATTCAACCCTAGCAGCTTT
GACATTGCGACGAAAAGCCCTGCTCATCACACTTTCGTGATTTTCGTCGA
ACCAAGTCAAGCTTGCACCACAGCGTTACAGATTTGGAACAAGGTCGGCG
ATCTTTTCTCGGAAGATGAACACATCGTCGTCGCCAAAGTGGACGGAGAC
AGGTATAGCGCGTTGGCTGCGGAACAAGACGTTTCGATGTACCCGACTTT
CAAGTACTATGGGAAGGGGGGTACTCAGAAGTTTGAAGATGAATTAAGCT
CAGACTCGCTCATGTCCTTCATCAACGACGTGACTGGAATGGATGTAACG
ATCGATGATGGGGTGCTTCCTTCGGCCGGCAAAATCCTTGAGATATCTGA
GCAAATTCAGTCTTTCGTCAAAGCCAAAACAGAGGAGCAACGAGTTCAAT
TAATGGATACATGCAAGGTGACCGTGGAAAAACTAAACGAGAAGGCAAAA
GAAGACTACAAGTACTACTCCAAGGTATTCTCGAAAATTTCTGAAAAGGG
GATGGCATATATCAGCAAAGAAAAAGCTCGGCTTTCTTCCCTTCTAGAAG
ATGTTGACAACATACAACGTTCCCAGCGAAGGAAGTTCATGAAGAACCTG
AACGTGTTGAAGGAATTCACTGAGCTTTGA
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