Gchil1569.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1569.t1
Unique NameGchil1569.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length588
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:978248..980121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004363600.1
Preferred namexdhA
PFAMsADH_N,ADH_zinc_N
Max annot lvl33154|Opisthokonta
KEGG rclassRC00085,RC00102
KEGG koko:K00008,ko:K05351
KEGG ReactionR00875,R01896
KEGG Pathwayko00040,ko00051,ko01100,map00040,map00051,map01100
KEGG ModuleM00014
GOsGO:0003674,GO:0003824,GO:0003939,GO:0005975,GO:0005996,GO:0005997,GO:0005999,GO:0006059,GO:0006066,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009987,GO:0016051,GO:0016052,GO:0016491,GO:0016614,GO:0016616,GO:0019318,GO:0019321,GO:0019322,GO:0019323,GO:0019400,GO:0019405,GO:0019407,GO:0019519,GO:0019527,GO:0019637,GO:0019697,GO:0019751,GO:0031320,GO:0042732,GO:0042843,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0046164,GO:0046174,GO:0046364,GO:0046365,GO:0046526,GO:0050019,GO:0051160,GO:0051164,GO:0051167,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901159,GO:1901575,GO:1901576,GO:1901615,GO:1901616
Evalue3.67e-133
EggNOG OGsCOG1063@1|root,KOG0024@2759|Eukaryota,38BYX@33154|Opisthokonta
EC1.1.1.14,1.1.1.9
DescriptionDehydrogenase
COG categoryQ
BiGG ReactioniMM904.YLR070C,iND750.YLR070C
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1569Gchil1569Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 978248..980121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1569.t1Gchil1569.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 978248..980121 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1569.t1.start1Gchil1569.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 978248..978250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1569.t1.CDS1Gchil1569.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 978248..978835 +
Gchil1569.t1.CDS2Gchil1569.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 978946..980121 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1569.t1.exon1Gchil1569.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 978248..978835 +
Gchil1569.t1.exon2Gchil1569.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 978946..980121 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1569.t1.intron1Gchil1569.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 978836..978945 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1569.t1.stop1Gchil1569.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 980119..980121 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1569.t1 ID=Gchil1569.t1|Name=Gchil1569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=588bp
MADQTLSQQTLPQPMSVPPPPTPPDDVPDGELDPNLVKLSCQNRIRNRSK
RSPEWIFFADAGMWQTVNGEESKFRIANCRYCLKAHIETRIRGKIETMKN
HILECDKIPASQKAVYERHPARFRKRQSAAGAVDPSKRLKYDGLLKANAH
LNVDGVENKAVVLHGAGDLRIEKVPIPAIPEGHVLVAMRSVGICGSDVHY
WTDGRIGDFVIDKPMILGHEGSGVVRLVGENVTNVEEGDRVAIEPGVPCS
ACTHCTGGRYNLCADVKFAATPPVDGSLAHFIVHPAHFLYRLSPMISFDE
AALFEPLSVGIHACRRGGITLGSTVLITGAGSIGLMCMLVAKASGASQVS
ILDIDTDRLQVAKELGADRVVLTHTEADPKVSVEGLHADVCIEASGVDSA
IRSCVFGVKRGGVVVLVGMGRPEVTLPVLEIGIREIDIRGVFRYCNTYPA
ALDLVNSGKVNLKRLVTHRFKMLDALDAFEASRNRASKAIKVIIDCTPQP
TQPVSSQATSVAPSIASPLPNIPNTIQTGLNTSLPTSLPSQVASVATVGS
VPAVQIAMSAAAATTVPPVPTPPPQQNPMMAWGDRDS*
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spliced messenger RNA

>Gchil1569.t1 ID=Gchil1569.t1|Name=Gchil1569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1764bp|location=Sequence derived from alignment at tig00004403_pilon:978248..980121+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGACCAAACGCTGTCGCAGCAGACGCTGCCGCAGCCCATGTCCGT
GCCGCCACCGCCTACGCCACCCGACGACGTGCCCGATGGTGAGCTCGACC
CGAACCTCGTCAAACTCTCCTGTCAGAACCGCATTCGCAACCGCTCTAAG
CGCTCCCCTGAATGGATCTTCTTCGCCGACGCCGGCATGTGGCAGACCGT
CAACGGCGAGGAGTCCAAGTTTCGTATCGCAAACTGCCGCTACTGCCTCA
AGGCCCACATTGAGACACGCATTCGCGGCAAAATAGAGACCATGAAAAAC
CACATCCTCGAGTGCGACAAGATTCCAGCCTCGCAAAAGGCCGTCTACGA
GCGCCATCCTGCACGTTTCCGTAAGCGTCAGTCCGCCGCAGGCGCCGTCG
ACCCCTCCAAGCGTCTCAAGTACGACGGACTTCTTAAGGCTAACGCCCAT
CTTAACGTCGATGGCGTGGAAAACAAGGCCGTCGTCCTACATGGTGCCGG
CGATTTGCGCATCGAAAAAGTTCCCATTCCCGCCATCCCAGAGGGGCACG
TTCTTGTCGCTATGCGATCCGTTGGCATCTGTGGATCGGATGTCCACTAC
TGGACCGACGGCCGCATCGGCGATTTCGTCATTGACAAACCTATGATTCT
GGGCCACGAAGGTTCGGGTGTCGTCCGTCTAGTGGGCGAGAATGTAACCA
ATGTCGAGGAAGGAGACCGCGTCGCCATTGAGCCAGGCGTGCCGTGTTCT
GCATGCACTCACTGCACTGGCGGCCGTTACAACCTCTGTGCAGACGTCAA
GTTTGCCGCTACCCCTCCTGTCGATGGGTCACTGGCCCATTTCATTGTGC
ACCCTGCTCACTTTCTGTACAGGCTTTCTCCCATGATTTCCTTTGACGAG
GCTGCCCTTTTCGAACCCCTCTCCGTCGGCATTCATGCCTGTCGGAGAGG
AGGAATCACCCTGGGCTCGACCGTGCTCATTACCGGTGCGGGGTCTATTG
GGCTCATGTGCATGCTTGTGGCCAAGGCTTCCGGCGCCTCTCAAGTTTCC
ATTCTAGATATTGACACTGATCGCTTGCAGGTCGCCAAGGAGCTGGGAGC
AGATAGAGTTGTCCTCACTCACACCGAGGCCGACCCCAAGGTGTCTGTCG
AAGGGCTCCACGCCGACGTGTGCATTGAAGCATCTGGAGTCGATTCTGCA
ATCAGGTCCTGCGTGTTTGGCGTCAAACGCGGCGGAGTAGTTGTTCTAGT
CGGTATGGGTCGCCCGGAAGTTACCCTCCCAGTGCTGGAAATTGGAATTC
GCGAGATCGATATACGTGGCGTTTTTCGGTACTGCAATACGTATCCCGCC
GCTCTAGATCTTGTCAACTCTGGAAAAGTCAACCTCAAAAGGCTTGTTAC
ACATCGCTTCAAGATGCTCGATGCTCTGGATGCCTTTGAAGCGTCACGAA
ATCGAGCCAGTAAGGCTATCAAGGTCATAATCGATTGCACCCCTCAACCC
ACCCAACCTGTTAGCTCGCAGGCCACCAGCGTGGCGCCATCCATTGCGAG
CCCTCTTCCAAACATACCCAACACCATTCAAACTGGACTGAATACCTCTT
TGCCAACATCGTTGCCGTCGCAAGTCGCATCTGTAGCCACTGTGGGTTCG
GTTCCTGCCGTGCAAATCGCCATGTCTGCAGCTGCAGCGACGACGGTGCC
CCCTGTTCCGACACCACCGCCGCAACAGAATCCTATGATGGCTTGGGGTG
ATCGTGACTCTTGA
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protein sequence of Gchil1569.t1

>Gchil1569.t1 ID=Gchil1569.t1|Name=Gchil1569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=588bp
MADQTLSQQTLPQPMSVPPPPTPPDDVPDGELDPNLVKLSCQNRIRNRSK
RSPEWIFFADAGMWQTVNGEESKFRIANCRYCLKAHIETRIRGKIETMKN
HILECDKIPASQKAVYERHPARFRKRQSAAGAVDPSKRLKYDGLLKANAH
LNVDGVENKAVVLHGAGDLRIEKVPIPAIPEGHVLVAMRSVGICGSDVHY
WTDGRIGDFVIDKPMILGHEGSGVVRLVGENVTNVEEGDRVAIEPGVPCS
ACTHCTGGRYNLCADVKFAATPPVDGSLAHFIVHPAHFLYRLSPMISFDE
AALFEPLSVGIHACRRGGITLGSTVLITGAGSIGLMCMLVAKASGASQVS
ILDIDTDRLQVAKELGADRVVLTHTEADPKVSVEGLHADVCIEASGVDSA
IRSCVFGVKRGGVVVLVGMGRPEVTLPVLEIGIREIDIRGVFRYCNTYPA
ALDLVNSGKVNLKRLVTHRFKMLDALDAFEASRNRASKAIKVIIDCTPQP
TQPVSSQATSVAPSIASPLPNIPNTIQTGLNTSLPTSLPSQVASVATVGS
VPAVQIAMSAAAATTVPPVPTPPPQQNPMMAWGDRDS*
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mRNA from alignment at tig00004403_pilon:978248..980121+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1569.t1 ID=Gchil1569.t1|Name=Gchil1569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1874bp|location=Sequence derived from alignment at tig00004403_pilon:978248..980121+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGACCAAACGCTGTCGCAGCAGACGCTGCCGCAGCCCATGTCCGT
GCCGCCACCGCCTACGCCACCCGACGACGTGCCCGATGGTGAGCTCGACC
CGAACCTCGTCAAACTCTCCTGTCAGAACCGCATTCGCAACCGCTCTAAG
CGCTCCCCTGAATGGATCTTCTTCGCCGACGCCGGCATGTGGCAGACCGT
CAACGGCGAGGAGTCCAAGTTTCGTATCGCAAACTGCCGCTACTGCCTCA
AGGCCCACATTGAGACACGCATTCGCGGCAAAATAGAGACCATGAAAAAC
CACATCCTCGAGTGCGACAAGATTCCAGCCTCGCAAAAGGCCGTCTACGA
GCGCCATCCTGCACGTTTCCGTAAGCGTCAGTCCGCCGCAGGCGCCGTCG
ACCCCTCCAAGCGTCTCAAGTACGACGGACTTCTTAAGGCTAACGCCCAT
CTTAACGTCGATGGCGTGGAAAACAAGGCCGTCGTCCTACATGGTGCCGG
CGATTTGCGCATCGAAAAAGTTCCCATTCCCGCCATCCCAGAGGGGCACG
TTCTTGTCGCTATGCGATCCGTTGGCATCTGTGGATCGGTAAGTTCTCGC
TATCTACCCTCGTATTGCCCGCACCATCTGTCTGTGCCCCCCTTGTCGTC
GTCCCGCGCGCTGACCGCCCCCGTCTTCCCCAAACCTCCCTTTTCTAGGA
TGTCCACTACTGGACCGACGGCCGCATCGGCGATTTCGTCATTGACAAAC
CTATGATTCTGGGCCACGAAGGTTCGGGTGTCGTCCGTCTAGTGGGCGAG
AATGTAACCAATGTCGAGGAAGGAGACCGCGTCGCCATTGAGCCAGGCGT
GCCGTGTTCTGCATGCACTCACTGCACTGGCGGCCGTTACAACCTCTGTG
CAGACGTCAAGTTTGCCGCTACCCCTCCTGTCGATGGGTCACTGGCCCAT
TTCATTGTGCACCCTGCTCACTTTCTGTACAGGCTTTCTCCCATGATTTC
CTTTGACGAGGCTGCCCTTTTCGAACCCCTCTCCGTCGGCATTCATGCCT
GTCGGAGAGGAGGAATCACCCTGGGCTCGACCGTGCTCATTACCGGTGCG
GGGTCTATTGGGCTCATGTGCATGCTTGTGGCCAAGGCTTCCGGCGCCTC
TCAAGTTTCCATTCTAGATATTGACACTGATCGCTTGCAGGTCGCCAAGG
AGCTGGGAGCAGATAGAGTTGTCCTCACTCACACCGAGGCCGACCCCAAG
GTGTCTGTCGAAGGGCTCCACGCCGACGTGTGCATTGAAGCATCTGGAGT
CGATTCTGCAATCAGGTCCTGCGTGTTTGGCGTCAAACGCGGCGGAGTAG
TTGTTCTAGTCGGTATGGGTCGCCCGGAAGTTACCCTCCCAGTGCTGGAA
ATTGGAATTCGCGAGATCGATATACGTGGCGTTTTTCGGTACTGCAATAC
GTATCCCGCCGCTCTAGATCTTGTCAACTCTGGAAAAGTCAACCTCAAAA
GGCTTGTTACACATCGCTTCAAGATGCTCGATGCTCTGGATGCCTTTGAA
GCGTCACGAAATCGAGCCAGTAAGGCTATCAAGGTCATAATCGATTGCAC
CCCTCAACCCACCCAACCTGTTAGCTCGCAGGCCACCAGCGTGGCGCCAT
CCATTGCGAGCCCTCTTCCAAACATACCCAACACCATTCAAACTGGACTG
AATACCTCTTTGCCAACATCGTTGCCGTCGCAAGTCGCATCTGTAGCCAC
TGTGGGTTCGGTTCCTGCCGTGCAAATCGCCATGTCTGCAGCTGCAGCGA
CGACGGTGCCCCCTGTTCCGACACCACCGCCGCAACAGAATCCTATGATG
GCTTGGGGTGATCGTGACTCTTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:978248..980121+

>Gchil1569.t1 ID=Gchil1569.t1|Name=Gchil1569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1764bp|location=Sequence derived from alignment at tig00004403_pilon:978248..980121+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGACCAAACGCTGTCGCAGCAGACGCTGCCGCAGCCCATGTCCGT
GCCGCCACCGCCTACGCCACCCGACGACGTGCCCGATGGTGAGCTCGACC
CGAACCTCGTCAAACTCTCCTGTCAGAACCGCATTCGCAACCGCTCTAAG
CGCTCCCCTGAATGGATCTTCTTCGCCGACGCCGGCATGTGGCAGACCGT
CAACGGCGAGGAGTCCAAGTTTCGTATCGCAAACTGCCGCTACTGCCTCA
AGGCCCACATTGAGACACGCATTCGCGGCAAAATAGAGACCATGAAAAAC
CACATCCTCGAGTGCGACAAGATTCCAGCCTCGCAAAAGGCCGTCTACGA
GCGCCATCCTGCACGTTTCCGTAAGCGTCAGTCCGCCGCAGGCGCCGTCG
ACCCCTCCAAGCGTCTCAAGTACGACGGACTTCTTAAGGCTAACGCCCAT
CTTAACGTCGATGGCGTGGAAAACAAGGCCGTCGTCCTACATGGTGCCGG
CGATTTGCGCATCGAAAAAGTTCCCATTCCCGCCATCCCAGAGGGGCACG
TTCTTGTCGCTATGCGATCCGTTGGCATCTGTGGATCGGATGTCCACTAC
TGGACCGACGGCCGCATCGGCGATTTCGTCATTGACAAACCTATGATTCT
GGGCCACGAAGGTTCGGGTGTCGTCCGTCTAGTGGGCGAGAATGTAACCA
ATGTCGAGGAAGGAGACCGCGTCGCCATTGAGCCAGGCGTGCCGTGTTCT
GCATGCACTCACTGCACTGGCGGCCGTTACAACCTCTGTGCAGACGTCAA
GTTTGCCGCTACCCCTCCTGTCGATGGGTCACTGGCCCATTTCATTGTGC
ACCCTGCTCACTTTCTGTACAGGCTTTCTCCCATGATTTCCTTTGACGAG
GCTGCCCTTTTCGAACCCCTCTCCGTCGGCATTCATGCCTGTCGGAGAGG
AGGAATCACCCTGGGCTCGACCGTGCTCATTACCGGTGCGGGGTCTATTG
GGCTCATGTGCATGCTTGTGGCCAAGGCTTCCGGCGCCTCTCAAGTTTCC
ATTCTAGATATTGACACTGATCGCTTGCAGGTCGCCAAGGAGCTGGGAGC
AGATAGAGTTGTCCTCACTCACACCGAGGCCGACCCCAAGGTGTCTGTCG
AAGGGCTCCACGCCGACGTGTGCATTGAAGCATCTGGAGTCGATTCTGCA
ATCAGGTCCTGCGTGTTTGGCGTCAAACGCGGCGGAGTAGTTGTTCTAGT
CGGTATGGGTCGCCCGGAAGTTACCCTCCCAGTGCTGGAAATTGGAATTC
GCGAGATCGATATACGTGGCGTTTTTCGGTACTGCAATACGTATCCCGCC
GCTCTAGATCTTGTCAACTCTGGAAAAGTCAACCTCAAAAGGCTTGTTAC
ACATCGCTTCAAGATGCTCGATGCTCTGGATGCCTTTGAAGCGTCACGAA
ATCGAGCCAGTAAGGCTATCAAGGTCATAATCGATTGCACCCCTCAACCC
ACCCAACCTGTTAGCTCGCAGGCCACCAGCGTGGCGCCATCCATTGCGAG
CCCTCTTCCAAACATACCCAACACCATTCAAACTGGACTGAATACCTCTT
TGCCAACATCGTTGCCGTCGCAAGTCGCATCTGTAGCCACTGTGGGTTCG
GTTCCTGCCGTGCAAATCGCCATGTCTGCAGCTGCAGCGACGACGGTGCC
CCCTGTTCCGACACCACCGCCGCAACAGAATCCTATGATGGCTTGGGGTG
ATCGTGACTCTTGA
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