Gchil1567.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1567.t1
Unique Name	Gchil1567.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	325

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:973239..974213 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005652002.1
Preferred name	RACK1
PFAMs	WD40
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K14753
KEGG Pathway	ko05162,map05162
Evalue	5.47e-153
EggNOG OGs	KOG0279@1\|root,KOG0279@2759\|Eukaryota,37HP9@33090\|Viridiplantae,34JNF@3041\|Chlorophyta
Description	component of 40S small ribosomal subunit
COG category	T
BRITE	ko00000,ko00001,ko03019,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1567	Gchil1567	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 973239..974213 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1567.t1.start1	Gchil1567.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 973239..973241 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1567.t1.CDS1	Gchil1567.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 973239..974213 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1567.t1.exon1	Gchil1567.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 973239..974213 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1567.t1.stop1	Gchil1567.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 974211..974213 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1567.t1	Gchil1567.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 973239..974213 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:973239..974213+
coding sequence from alignment at tig00004403_pilon:973239..974213+

mRNA sequence

>Gchil1567.t1 ID=Gchil1567.t1|Name=Gchil1567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=325bp
MGESLSLRGYLKGHEGWVTAIAATVDPNDSDAPDIVLSASRDKSILVWQL
TTDSEDQTSYGYPKKSLTGHGHFVSDVVLSYDGQFALSSSWDHTLRLWDL
NTGNTTRRFVGHTKDVLSVAFSADNRQIVSGSRDRTIKLWNTLGECKYTI
HDEGHSEWVSCVRFSPSTQNPLIVSCGWDKLVKVWNLTNCKLRTNLQNHS
GYLNAVTVSPDGSLCASGGKDGVAMLWDLQEGKHLYSLEANDIIHALCFS
PNRYWLCAATNSCIKIWDLESKTVVDELRDDQGEIGKKSAVPACISLAWS
SDGSTLFSGYTDNLIRVWGVGLGR*

spliced messenger RNA

>Gchil1567.t1 ID=Gchil1567.t1|Name=Gchil1567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=975bp|location=Sequence derived from alignment at tig00004403_pilon:973239..974213+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGAATCTCTTTCGCTCCGCGGATATCTCAAGGGCCACGAAGGCTG
GGTCACTGCTATTGCCGCCACAGTAGACCCCAACGACAGCGACGCGCCCG
ATATTGTCCTCTCTGCGTCGCGCGACAAGAGCATCCTCGTGTGGCAGCTC
ACCACCGACTCGGAGGATCAGACGTCGTACGGCTACCCCAAAAAGTCTCT
TACGGGCCACGGCCATTTTGTGTCCGATGTGGTCCTGTCCTATGATGGTC
AGTTCGCCCTCTCCTCCTCGTGGGATCACACCCTTCGTCTATGGGACCTC
AATACGGGAAACACTACTAGACGCTTTGTAGGTCACACCAAGGACGTGCT
CTCTGTCGCCTTCTCCGCCGACAATCGCCAAATTGTGTCTGGATCACGCG
ATCGAACCATCAAGTTGTGGAATACTCTTGGCGAATGCAAGTACACCATT
CACGACGAGGGACATTCAGAATGGGTTTCGTGCGTTCGTTTCTCCCCGTC
CACCCAGAATCCCCTCATCGTATCGTGCGGCTGGGATAAGTTGGTCAAGG
TTTGGAATCTTACCAACTGCAAATTGCGCACCAATCTTCAGAATCATAGC
GGATATCTCAACGCCGTCACAGTATCTCCGGATGGCTCCCTGTGTGCGTC
GGGAGGAAAGGACGGCGTAGCAATGCTGTGGGATCTTCAAGAAGGAAAGC
ATTTGTATTCTTTGGAGGCAAATGATATCATTCATGCCTTGTGTTTCTCT
CCCAACAGATACTGGCTTTGCGCTGCCACAAACTCCTGTATCAAGATTTG
GGATTTGGAGTCAAAGACTGTGGTGGATGAGTTGCGCGATGATCAGGGTG
AAATCGGTAAGAAGTCTGCTGTTCCAGCTTGTATTTCACTCGCGTGGTCG
AGCGATGGATCTACATTGTTCTCTGGATACACGGATAATCTCATTCGTGT
CTGGGGCGTTGGTCTCGGCCGCTAG

protein sequence of Gchil1567.t1

>Gchil1567.t1 ID=Gchil1567.t1|Name=Gchil1567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=325bp
MGESLSLRGYLKGHEGWVTAIAATVDPNDSDAPDIVLSASRDKSILVWQL
TTDSEDQTSYGYPKKSLTGHGHFVSDVVLSYDGQFALSSSWDHTLRLWDL
NTGNTTRRFVGHTKDVLSVAFSADNRQIVSGSRDRTIKLWNTLGECKYTI
HDEGHSEWVSCVRFSPSTQNPLIVSCGWDKLVKVWNLTNCKLRTNLQNHS
GYLNAVTVSPDGSLCASGGKDGVAMLWDLQEGKHLYSLEANDIIHALCFS
PNRYWLCAATNSCIKIWDLESKTVVDELRDDQGEIGKKSAVPACISLAWS
SDGSTLFSGYTDNLIRVWGVGLGR*

mRNA from alignment at tig00004403_pilon:973239..974213+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1567.t1 ID=Gchil1567.t1|Name=Gchil1567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=975bp|location=Sequence derived from alignment at tig00004403_pilon:973239..974213+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGAATCTCTTTCGCTCCGCGGATATCTCAAGGGCCACGAAGGCTG
GGTCACTGCTATTGCCGCCACAGTAGACCCCAACGACAGCGACGCGCCCG
ATATTGTCCTCTCTGCGTCGCGCGACAAGAGCATCCTCGTGTGGCAGCTC
ACCACCGACTCGGAGGATCAGACGTCGTACGGCTACCCCAAAAAGTCTCT
TACGGGCCACGGCCATTTTGTGTCCGATGTGGTCCTGTCCTATGATGGTC
AGTTCGCCCTCTCCTCCTCGTGGGATCACACCCTTCGTCTATGGGACCTC
AATACGGGAAACACTACTAGACGCTTTGTAGGTCACACCAAGGACGTGCT
CTCTGTCGCCTTCTCCGCCGACAATCGCCAAATTGTGTCTGGATCACGCG
ATCGAACCATCAAGTTGTGGAATACTCTTGGCGAATGCAAGTACACCATT
CACGACGAGGGACATTCAGAATGGGTTTCGTGCGTTCGTTTCTCCCCGTC
CACCCAGAATCCCCTCATCGTATCGTGCGGCTGGGATAAGTTGGTCAAGG
TTTGGAATCTTACCAACTGCAAATTGCGCACCAATCTTCAGAATCATAGC
GGATATCTCAACGCCGTCACAGTATCTCCGGATGGCTCCCTGTGTGCGTC
GGGAGGAAAGGACGGCGTAGCAATGCTGTGGGATCTTCAAGAAGGAAAGC
ATTTGTATTCTTTGGAGGCAAATGATATCATTCATGCCTTGTGTTTCTCT
CCCAACAGATACTGGCTTTGCGCTGCCACAAACTCCTGTATCAAGATTTG
GGATTTGGAGTCAAAGACTGTGGTGGATGAGTTGCGCGATGATCAGGGTG
AAATCGGTAAGAAGTCTGCTGTTCCAGCTTGTATTTCACTCGCGTGGTCG
AGCGATGGATCTACATTGTTCTCTGGATACACGGATAATCTCATTCGTGT
CTGGGGCGTTGGTCTCGGCCGCTAG

Coding sequence (CDS) from alignment at tig00004403_pilon:973239..974213+

>Gchil1567.t1 ID=Gchil1567.t1|Name=Gchil1567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=975bp|location=Sequence derived from alignment at tig00004403_pilon:973239..974213+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGAATCTCTTTCGCTCCGCGGATATCTCAAGGGCCACGAAGGCTG
GGTCACTGCTATTGCCGCCACAGTAGACCCCAACGACAGCGACGCGCCCG
ATATTGTCCTCTCTGCGTCGCGCGACAAGAGCATCCTCGTGTGGCAGCTC
ACCACCGACTCGGAGGATCAGACGTCGTACGGCTACCCCAAAAAGTCTCT
TACGGGCCACGGCCATTTTGTGTCCGATGTGGTCCTGTCCTATGATGGTC
AGTTCGCCCTCTCCTCCTCGTGGGATCACACCCTTCGTCTATGGGACCTC
AATACGGGAAACACTACTAGACGCTTTGTAGGTCACACCAAGGACGTGCT
CTCTGTCGCCTTCTCCGCCGACAATCGCCAAATTGTGTCTGGATCACGCG
ATCGAACCATCAAGTTGTGGAATACTCTTGGCGAATGCAAGTACACCATT
CACGACGAGGGACATTCAGAATGGGTTTCGTGCGTTCGTTTCTCCCCGTC
CACCCAGAATCCCCTCATCGTATCGTGCGGCTGGGATAAGTTGGTCAAGG
TTTGGAATCTTACCAACTGCAAATTGCGCACCAATCTTCAGAATCATAGC
GGATATCTCAACGCCGTCACAGTATCTCCGGATGGCTCCCTGTGTGCGTC
GGGAGGAAAGGACGGCGTAGCAATGCTGTGGGATCTTCAAGAAGGAAAGC
ATTTGTATTCTTTGGAGGCAAATGATATCATTCATGCCTTGTGTTTCTCT
CCCAACAGATACTGGCTTTGCGCTGCCACAAACTCCTGTATCAAGATTTG
GGATTTGGAGTCAAAGACTGTGGTGGATGAGTTGCGCGATGATCAGGGTG
AAATCGGTAAGAAGTCTGCTGTTCCAGCTTGTATTTCACTCGCGTGGTCG
AGCGATGGATCTACATTGTTCTCTGGATACACGGATAATCTCATTCGTGT
CTGGGGCGTTGGTCTCGGCCGCTAG