Gchil1565.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1565.t1
Unique NameGchil1565.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length543
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:939520..941237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702903.1
PFAMsFGGY_C,FGGY_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00864
KEGG ReactionR00847
KEGG Pathwayko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626
GOsGO:0003674,GO:0003824,GO:0004370,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005975,GO:0006066,GO:0006071,GO:0006072,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006793,GO:0006796,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009058,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019405,GO:0019563,GO:0019637,GO:0019751,GO:0033554,GO:0042802,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046164,GO:0046167,GO:0046174,GO:0046486,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0052646,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901575,GO:1901576,GO:1901615,GO:1901616
Evalue8.74e-175
EggNOG OGsCOG0554@1|root,KOG2517@2759|Eukaryota
EC2.7.1.30
Descriptionglycerol kinase activity
COG categoryC
BRITEko00000,ko00001,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1565Gchil1565Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 939520..941237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1565.t1Gchil1565.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 939520..941237 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1565.t1.stop1Gchil1565.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 939520..939522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1565.t1.CDS1Gchil1565.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 939520..940985 -
Gchil1565.t1.CDS2Gchil1565.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 941075..941237 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1565.t1.exon1Gchil1565.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 939520..940985 -
Gchil1565.t1.exon2Gchil1565.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 941075..941237 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1565.t1.intron1Gchil1565.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 940986..941074 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1565.t1.start1Gchil1565.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 941235..941237 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1565.t1 ID=Gchil1565.t1|Name=Gchil1565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=543bp
MSALSAKYVLSIDSGTTSTRSILYDSDCHQVCRSENIENTPDYPHASWAE
HDPKVLLENAIEAIKSCLAEAAKLSIDPSQVKAVGITNQRETTIVWDRNT
GEPLYKAIVWSDLRTKSTAEDLRSRYRESKVRSKCGLPISSYFSGVKLRW
MMENIPEVAAAIEEGRALFGTVDTWLVWNLSEEKKHLTDVTNAGRTMMMN
IHELDWDDYLLKLVGVSRDVLPDILPCSADFGTMGVTALKGTVISGVIGD
QQSALVGQACFKVGEAKCTYGTGGFLIVNTGTEPKVTHSYLLTTPAYKFK
ENCVYSLEGSIAVAGSAVTWLRDNLQIIKRAADVEPLARSVEDTDDVFMV
PAFSGFLAPYWREDARGTIVGFTQKTNKAHIARATLESITYKIQAVLEAS
EEDMGFPLRQLRVDGGAASNNLLMEMQADIIDREVVRPNDVETTAMGAAF
AAGHEIGMYESLEEFRRTRRTDMSFKPRISEEERSGKINRWNQAVERSFG
WVKTPDKKPWIPAPPPYFLVGLLIGVGIGMVTTSIMCRYMKV*
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spliced messenger RNA

>Gchil1565.t1 ID=Gchil1565.t1|Name=Gchil1565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00004403_pilon:939520..941237- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCTTTGTCCGCGAAGTATGTCCTCTCCATCGATTCGGGAACCAC
TTCTACCCGCTCTATCTTGTACGACTCAGACTGTCATCAAGTATGCCGGT
CCGAAAATATTGAAAACACCCCGGATTATCCTCATGCTAGTTGGGCAGAA
CATGATCCTAAAGTGCTTCTGGAAAATGCCATAGAAGCCATCAAAAGTTG
CCTCGCGGAAGCGGCGAAACTCTCAATCGATCCGTCGCAGGTCAAGGCCG
TCGGGATCACAAACCAGCGTGAAACAACAATTGTATGGGACCGCAACACA
GGTGAGCCCCTTTATAAAGCAATTGTGTGGAGCGACCTTCGCACCAAATC
TACTGCCGAAGACCTCCGCTCAAGATACAGAGAGTCAAAGGTTCGGTCAA
AGTGCGGCTTGCCTATATCCTCGTACTTTTCGGGAGTTAAACTACGATGG
ATGATGGAGAACATCCCCGAGGTCGCCGCTGCCATTGAAGAAGGTAGAGC
GTTGTTTGGTACCGTCGACACATGGCTTGTATGGAATCTCTCTGAGGAAA
AGAAACATTTAACTGACGTTACGAACGCTGGCCGAACAATGATGATGAAC
ATTCATGAACTGGACTGGGATGATTACTTACTGAAATTGGTCGGAGTCAG
CAGAGATGTGCTTCCGGATATTCTTCCGTGCTCAGCCGATTTCGGAACGA
TGGGCGTGACAGCTCTAAAAGGAACGGTTATTTCCGGTGTAATTGGCGAC
CAGCAAAGCGCTCTTGTCGGACAGGCGTGCTTTAAGGTTGGAGAGGCCAA
GTGCACCTACGGAACTGGAGGTTTCTTAATTGTAAACACTGGCACGGAAC
CAAAAGTCACCCATAGCTATTTGCTTACAACTCCGGCTTACAAGTTTAAG
GAGAATTGTGTGTATAGTTTGGAGGGAAGTATCGCTGTTGCGGGGTCTGC
TGTCACATGGCTCCGTGATAATCTTCAAATAATCAAAAGAGCGGCGGATG
TTGAGCCTCTTGCGAGAAGCGTGGAAGACACCGACGATGTCTTCATGGTG
CCTGCCTTCTCCGGATTCTTGGCTCCGTACTGGAGAGAGGATGCTCGAGG
GACAATCGTTGGCTTCACTCAGAAGACAAACAAAGCACATATTGCGCGAG
CAACGTTGGAAAGCATAACTTACAAAATACAGGCAGTCTTGGAAGCATCT
GAAGAAGACATGGGATTTCCGTTGCGACAACTCAGAGTAGACGGGGGTGC
CGCGAGTAATAATCTGCTCATGGAAATGCAGGCAGACATCATTGATCGAG
AGGTGGTAAGACCGAATGACGTAGAAACGACAGCTATGGGCGCAGCATTT
GCTGCAGGGCATGAAATTGGCATGTACGAATCTCTCGAAGAGTTCCGTAG
AACACGCAGAACGGATATGTCATTTAAGCCGCGAATCTCAGAGGAAGAGC
GATCGGGAAAAATCAACAGATGGAACCAGGCTGTGGAAAGGTCATTTGGA
TGGGTGAAAACTCCTGACAAAAAGCCTTGGATTCCGGCCCCTCCACCATA
TTTCCTCGTGGGTTTACTTATCGGTGTTGGGATTGGGATGGTAACTACAT
CAATAATGTGTCGCTACATGAAAGTGTAG
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protein sequence of Gchil1565.t1

>Gchil1565.t1 ID=Gchil1565.t1|Name=Gchil1565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=543bp
MSALSAKYVLSIDSGTTSTRSILYDSDCHQVCRSENIENTPDYPHASWAE
HDPKVLLENAIEAIKSCLAEAAKLSIDPSQVKAVGITNQRETTIVWDRNT
GEPLYKAIVWSDLRTKSTAEDLRSRYRESKVRSKCGLPISSYFSGVKLRW
MMENIPEVAAAIEEGRALFGTVDTWLVWNLSEEKKHLTDVTNAGRTMMMN
IHELDWDDYLLKLVGVSRDVLPDILPCSADFGTMGVTALKGTVISGVIGD
QQSALVGQACFKVGEAKCTYGTGGFLIVNTGTEPKVTHSYLLTTPAYKFK
ENCVYSLEGSIAVAGSAVTWLRDNLQIIKRAADVEPLARSVEDTDDVFMV
PAFSGFLAPYWREDARGTIVGFTQKTNKAHIARATLESITYKIQAVLEAS
EEDMGFPLRQLRVDGGAASNNLLMEMQADIIDREVVRPNDVETTAMGAAF
AAGHEIGMYESLEEFRRTRRTDMSFKPRISEEERSGKINRWNQAVERSFG
WVKTPDKKPWIPAPPPYFLVGLLIGVGIGMVTTSIMCRYMKV*
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mRNA from alignment at tig00004403_pilon:939520..941237-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1565.t1 ID=Gchil1565.t1|Name=Gchil1565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1718bp|location=Sequence derived from alignment at tig00004403_pilon:939520..941237- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGCTTTGTCCGCGAAGTATGTCCTCTCCATCGATTCGGGAACCAC
TTCTACCCGCTCTATCTTGTACGACTCAGACTGTCATCAAGTATGCCGGT
CCGAAAATATTGAAAACACCCCGGATTATCCTCATGCTAGTTGGGCAGAA
CATGATCCTAAAGGTAAGTATTCCGTTTCCTCATCACAATAGGCTTGTGA
TGCGTTCTGACTGTCTTCGTTACATGGTTACATGCGTTTGGTTCTACTTC
AGTGCTTCTGGAAAATGCCATAGAAGCCATCAAAAGTTGCCTCGCGGAAG
CGGCGAAACTCTCAATCGATCCGTCGCAGGTCAAGGCCGTCGGGATCACA
AACCAGCGTGAAACAACAATTGTATGGGACCGCAACACAGGTGAGCCCCT
TTATAAAGCAATTGTGTGGAGCGACCTTCGCACCAAATCTACTGCCGAAG
ACCTCCGCTCAAGATACAGAGAGTCAAAGGTTCGGTCAAAGTGCGGCTTG
CCTATATCCTCGTACTTTTCGGGAGTTAAACTACGATGGATGATGGAGAA
CATCCCCGAGGTCGCCGCTGCCATTGAAGAAGGTAGAGCGTTGTTTGGTA
CCGTCGACACATGGCTTGTATGGAATCTCTCTGAGGAAAAGAAACATTTA
ACTGACGTTACGAACGCTGGCCGAACAATGATGATGAACATTCATGAACT
GGACTGGGATGATTACTTACTGAAATTGGTCGGAGTCAGCAGAGATGTGC
TTCCGGATATTCTTCCGTGCTCAGCCGATTTCGGAACGATGGGCGTGACA
GCTCTAAAAGGAACGGTTATTTCCGGTGTAATTGGCGACCAGCAAAGCGC
TCTTGTCGGACAGGCGTGCTTTAAGGTTGGAGAGGCCAAGTGCACCTACG
GAACTGGAGGTTTCTTAATTGTAAACACTGGCACGGAACCAAAAGTCACC
CATAGCTATTTGCTTACAACTCCGGCTTACAAGTTTAAGGAGAATTGTGT
GTATAGTTTGGAGGGAAGTATCGCTGTTGCGGGGTCTGCTGTCACATGGC
TCCGTGATAATCTTCAAATAATCAAAAGAGCGGCGGATGTTGAGCCTCTT
GCGAGAAGCGTGGAAGACACCGACGATGTCTTCATGGTGCCTGCCTTCTC
CGGATTCTTGGCTCCGTACTGGAGAGAGGATGCTCGAGGGACAATCGTTG
GCTTCACTCAGAAGACAAACAAAGCACATATTGCGCGAGCAACGTTGGAA
AGCATAACTTACAAAATACAGGCAGTCTTGGAAGCATCTGAAGAAGACAT
GGGATTTCCGTTGCGACAACTCAGAGTAGACGGGGGTGCCGCGAGTAATA
ATCTGCTCATGGAAATGCAGGCAGACATCATTGATCGAGAGGTGGTAAGA
CCGAATGACGTAGAAACGACAGCTATGGGCGCAGCATTTGCTGCAGGGCA
TGAAATTGGCATGTACGAATCTCTCGAAGAGTTCCGTAGAACACGCAGAA
CGGATATGTCATTTAAGCCGCGAATCTCAGAGGAAGAGCGATCGGGAAAA
ATCAACAGATGGAACCAGGCTGTGGAAAGGTCATTTGGATGGGTGAAAAC
TCCTGACAAAAAGCCTTGGATTCCGGCCCCTCCACCATATTTCCTCGTGG
GTTTACTTATCGGTGTTGGGATTGGGATGGTAACTACATCAATAATGTGT
CGCTACATGAAAGTGTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:939520..941237-

>Gchil1565.t1 ID=Gchil1565.t1|Name=Gchil1565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1629bp|location=Sequence derived from alignment at tig00004403_pilon:939520..941237- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGCTTTGTCCGCGAAGTATGTCCTCTCCATCGATTCGGGAACCAC
TTCTACCCGCTCTATCTTGTACGACTCAGACTGTCATCAAGTATGCCGGT
CCGAAAATATTGAAAACACCCCGGATTATCCTCATGCTAGTTGGGCAGAA
CATGATCCTAAAGTGCTTCTGGAAAATGCCATAGAAGCCATCAAAAGTTG
CCTCGCGGAAGCGGCGAAACTCTCAATCGATCCGTCGCAGGTCAAGGCCG
TCGGGATCACAAACCAGCGTGAAACAACAATTGTATGGGACCGCAACACA
GGTGAGCCCCTTTATAAAGCAATTGTGTGGAGCGACCTTCGCACCAAATC
TACTGCCGAAGACCTCCGCTCAAGATACAGAGAGTCAAAGGTTCGGTCAA
AGTGCGGCTTGCCTATATCCTCGTACTTTTCGGGAGTTAAACTACGATGG
ATGATGGAGAACATCCCCGAGGTCGCCGCTGCCATTGAAGAAGGTAGAGC
GTTGTTTGGTACCGTCGACACATGGCTTGTATGGAATCTCTCTGAGGAAA
AGAAACATTTAACTGACGTTACGAACGCTGGCCGAACAATGATGATGAAC
ATTCATGAACTGGACTGGGATGATTACTTACTGAAATTGGTCGGAGTCAG
CAGAGATGTGCTTCCGGATATTCTTCCGTGCTCAGCCGATTTCGGAACGA
TGGGCGTGACAGCTCTAAAAGGAACGGTTATTTCCGGTGTAATTGGCGAC
CAGCAAAGCGCTCTTGTCGGACAGGCGTGCTTTAAGGTTGGAGAGGCCAA
GTGCACCTACGGAACTGGAGGTTTCTTAATTGTAAACACTGGCACGGAAC
CAAAAGTCACCCATAGCTATTTGCTTACAACTCCGGCTTACAAGTTTAAG
GAGAATTGTGTGTATAGTTTGGAGGGAAGTATCGCTGTTGCGGGGTCTGC
TGTCACATGGCTCCGTGATAATCTTCAAATAATCAAAAGAGCGGCGGATG
TTGAGCCTCTTGCGAGAAGCGTGGAAGACACCGACGATGTCTTCATGGTG
CCTGCCTTCTCCGGATTCTTGGCTCCGTACTGGAGAGAGGATGCTCGAGG
GACAATCGTTGGCTTCACTCAGAAGACAAACAAAGCACATATTGCGCGAG
CAACGTTGGAAAGCATAACTTACAAAATACAGGCAGTCTTGGAAGCATCT
GAAGAAGACATGGGATTTCCGTTGCGACAACTCAGAGTAGACGGGGGTGC
CGCGAGTAATAATCTGCTCATGGAAATGCAGGCAGACATCATTGATCGAG
AGGTGGTAAGACCGAATGACGTAGAAACGACAGCTATGGGCGCAGCATTT
GCTGCAGGGCATGAAATTGGCATGTACGAATCTCTCGAAGAGTTCCGTAG
AACACGCAGAACGGATATGTCATTTAAGCCGCGAATCTCAGAGGAAGAGC
GATCGGGAAAAATCAACAGATGGAACCAGGCTGTGGAAAGGTCATTTGGA
TGGGTGAAAACTCCTGACAAAAAGCCTTGGATTCCGGCCCCTCCACCATA
TTTCCTCGTGGGTTTACTTATCGGTGTTGGGATTGGGATGGTAACTACAT
CAATAATGTGTCGCTACATGAAAGTGTAG
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