Gchil1562.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1562.t1
Unique NameGchil1562.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:934790..935632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog314275.MADE_1007265
Preferred namebioC
PFAMsMethyltransf_11
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00003,RC00460
KEGG koko:K02169
KEGG ReactionR09543
KEGG Pathwayko00780,ko01100,map00780,map01100
KEGG ModuleM00572
GOsGO:0003674,GO:0003824,GO:0004141,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008757,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0010340,GO:0016053,GO:0016740,GO:0016741,GO:0016787,GO:0016788,GO:0016874,GO:0016879,GO:0016882,GO:0017144,GO:0018130,GO:0019752,GO:0032259,GO:0032787,GO:0034641,GO:0042364,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0052689,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue6.49e-15
EggNOG OGsCOG0500@1|root,COG2226@2|Bacteria,1PA5F@1224|Proteobacteria,1RY7A@1236|Gammaproteobacteria,465B1@72275|Alteromonadaceae
EC2.1.1.197
DescriptionConverts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway
COG categoryQ
BiGG ReactioniECP_1309.ECP_0791,iSBO_1134.SBO_0664,iSFV_1184.SFV_0760,iSF_1195.SF0727,iSFxv_1172.SFxv_0792,iSSON_1240.SSON_0756,iS_1188.S0768,iSbBS512_1146.SbBS512_E2575
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1562Gchil1562Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 934790..935632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1562.t1Gchil1562.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 934790..935632 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1562.t1.start1Gchil1562.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 934790..934792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1562.t1.CDS1Gchil1562.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 934790..935293 +
Gchil1562.t1.CDS2Gchil1562.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 935372..935632 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1562.t1.exon1Gchil1562.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 934790..935293 +
Gchil1562.t1.exon2Gchil1562.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 935372..935632 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1562.t1.intron1Gchil1562.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 935294..935371 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1562.t1.stop1Gchil1562.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 935630..935632 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1562.t1 ID=Gchil1562.t1|Name=Gchil1562.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=255bp
MANVRFDRAFPEERYLRAIQEDFTVRAPRYNSGRSGEQHRQVIQTLLEYY
PPRYPLLDVACGTALLSELLGRKGEGVTGLDLTDAMLQQARIANPNATFV
QGRAEQLPFEDCSFSSAYSCSALVYFTDIPAVVNQIFRVLKRGAFFAYQA
VTLNSYVSGVELERAIQHLMNQAGFVDVDTHMIVVRDSLDVAQLERFWDA
TVGRNALMAKLRTLPSNEIQAIRDRWVQVMESKKNAEGVVPDVIESWYVR
GWKP*
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spliced messenger RNA

>Gchil1562.t1 ID=Gchil1562.t1|Name=Gchil1562.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00004403_pilon:934790..935632+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAACGTCCGCTTCGACCGCGCCTTCCCCGAGGAGCGCTACCTCCG
CGCCATTCAAGAAGACTTCACGGTGAGGGCGCCGCGCTACAATTCCGGTC
GCAGCGGCGAGCAGCACCGTCAAGTAATCCAAACCTTGCTCGAGTACTAC
CCGCCGCGATACCCCCTGTTGGATGTTGCCTGCGGTACAGCTCTCCTGTC
GGAGCTGCTTGGTCGGAAAGGCGAGGGCGTCACCGGCCTTGACCTTACAG
ACGCTATGCTACAACAAGCGCGTATCGCCAATCCCAACGCCACCTTTGTG
CAAGGCCGAGCCGAGCAATTGCCCTTTGAAGATTGTTCCTTTTCCTCTGC
TTACTCTTGTTCTGCCCTAGTTTATTTCACTGATATTCCAGCAGTTGTTA
ACCAAATCTTTCGAGTTTTGAAAAGAGGAGCTTTCTTCGCCTACCAGGCT
GTGACGCTCAATTCTTACGTGTCGGGTGTGGAATTGGAACGAGCCATTCA
ACACTTAATGAATCAGGCGGGATTTGTTGACGTTGACACTCACATGATTG
TCGTCAGAGACTCTCTTGATGTCGCCCAACTGGAGCGCTTTTGGGATGCA
ACTGTTGGTCGAAATGCGCTTATGGCTAAACTCAGAACGCTGCCCTCCAA
TGAAATTCAGGCTATAAGGGATCGCTGGGTCCAGGTCATGGAGAGCAAGA
AAAATGCCGAGGGTGTGGTTCCAGACGTTATTGAAAGTTGGTATGTTCGT
GGTTGGAAACCATAA
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protein sequence of Gchil1562.t1

>Gchil1562.t1 ID=Gchil1562.t1|Name=Gchil1562.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=255bp
MANVRFDRAFPEERYLRAIQEDFTVRAPRYNSGRSGEQHRQVIQTLLEYY
PPRYPLLDVACGTALLSELLGRKGEGVTGLDLTDAMLQQARIANPNATFV
QGRAEQLPFEDCSFSSAYSCSALVYFTDIPAVVNQIFRVLKRGAFFAYQA
VTLNSYVSGVELERAIQHLMNQAGFVDVDTHMIVVRDSLDVAQLERFWDA
TVGRNALMAKLRTLPSNEIQAIRDRWVQVMESKKNAEGVVPDVIESWYVR
GWKP*
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mRNA from alignment at tig00004403_pilon:934790..935632+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1562.t1 ID=Gchil1562.t1|Name=Gchil1562.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00004403_pilon:934790..935632+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAAACGTCCGCTTCGACCGCGCCTTCCCCGAGGAGCGCTACCTCCG
CGCCATTCAAGAAGACTTCACGGTGAGGGCGCCGCGCTACAATTCCGGTC
GCAGCGGCGAGCAGCACCGTCAAGTAATCCAAACCTTGCTCGAGTACTAC
CCGCCGCGATACCCCCTGTTGGATGTTGCCTGCGGTACAGCTCTCCTGTC
GGAGCTGCTTGGTCGGAAAGGCGAGGGCGTCACCGGCCTTGACCTTACAG
ACGCTATGCTACAACAAGCGCGTATCGCCAATCCCAACGCCACCTTTGTG
CAAGGCCGAGCCGAGCAATTGCCCTTTGAAGATTGTTCCTTTTCCTCTGC
TTACTCTTGTTCTGCCCTAGTTTATTTCACTGATATTCCAGCAGTTGTTA
ACCAAATCTTTCGAGTTTTGAAAAGAGGAGCTTTCTTCGCCTACCAGGCT
GTGACGCTCAATTCTTACGTGTCGGGTGTGGAATTGGAACGAGCCATTCA
ACACGTGCTTGGAATGAACCGTGCCAAGCATATTTTTGAGCTGCCGCATG
CTGTCACCCATGACGAGACTGCGAATTGAAAGTTAATGAATCAGGCGGGA
TTTGTTGACGTTGACACTCACATGATTGTCGTCAGAGACTCTCTTGATGT
CGCCCAACTGGAGCGCTTTTGGGATGCAACTGTTGGTCGAAATGCGCTTA
TGGCTAAACTCAGAACGCTGCCCTCCAATGAAATTCAGGCTATAAGGGAT
CGCTGGGTCCAGGTCATGGAGAGCAAGAAAAATGCCGAGGGTGTGGTTCC
AGACGTTATTGAAAGTTGGTATGTTCGTGGTTGGAAACCATAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:934790..935632+

>Gchil1562.t1 ID=Gchil1562.t1|Name=Gchil1562.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=765bp|location=Sequence derived from alignment at tig00004403_pilon:934790..935632+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAAACGTCCGCTTCGACCGCGCCTTCCCCGAGGAGCGCTACCTCCG
CGCCATTCAAGAAGACTTCACGGTGAGGGCGCCGCGCTACAATTCCGGTC
GCAGCGGCGAGCAGCACCGTCAAGTAATCCAAACCTTGCTCGAGTACTAC
CCGCCGCGATACCCCCTGTTGGATGTTGCCTGCGGTACAGCTCTCCTGTC
GGAGCTGCTTGGTCGGAAAGGCGAGGGCGTCACCGGCCTTGACCTTACAG
ACGCTATGCTACAACAAGCGCGTATCGCCAATCCCAACGCCACCTTTGTG
CAAGGCCGAGCCGAGCAATTGCCCTTTGAAGATTGTTCCTTTTCCTCTGC
TTACTCTTGTTCTGCCCTAGTTTATTTCACTGATATTCCAGCAGTTGTTA
ACCAAATCTTTCGAGTTTTGAAAAGAGGAGCTTTCTTCGCCTACCAGGCT
GTGACGCTCAATTCTTACGTGTCGGGTGTGGAATTGGAACGAGCCATTCA
ACACTTAATGAATCAGGCGGGATTTGTTGACGTTGACACTCACATGATTG
TCGTCAGAGACTCTCTTGATGTCGCCCAACTGGAGCGCTTTTGGGATGCA
ACTGTTGGTCGAAATGCGCTTATGGCTAAACTCAGAACGCTGCCCTCCAA
TGAAATTCAGGCTATAAGGGATCGCTGGGTCCAGGTCATGGAGAGCAAGA
AAAATGCCGAGGGTGTGGTTCCAGACGTTATTGAAAGTTGGTATGTTCGT
GGTTGGAAACCATAA
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