Gchil1555.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1555.t1
Unique Name	Gchil1555.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	695

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:850054..852138 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMG177CT
PFAMs	LETM1
Max annot lvl	2759\|Eukaryota
Evalue	2.43e-74
EggNOG OGs	KOG1043@1\|root,KOG1043@2759\|Eukaryota
Description	calcium export from the mitochondrion
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1555	Gchil1555	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 850054..852138 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1555.t1.start1	Gchil1555.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 850054..850056 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1555.t1.CDS1	Gchil1555.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 850054..852138 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1555.t1.exon1	Gchil1555.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 850054..852138 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1555.t1.stop1	Gchil1555.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 852136..852138 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1555.t1	Gchil1555.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 850054..852138 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:850054..852138+
coding sequence from alignment at tig00004403_pilon:850054..852138+

mRNA sequence

>Gchil1555.t1 ID=Gchil1555.t1|Name=Gchil1555.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=695bp
MAASVRRSRPSFVPLLALQRRGALNTTCRISPRRRIIRRLQSCAQAPEPA
QAPEPAQVVRPSTTSAPDDAAQQVLQVGLVSTRVRLLNTRLIVRLAEANI
RLALGLLEFSPLQTDTLSYTSEAQAAAHRVRKDLRSIRRIAAEAPVDHDA
TTLIAKLEHVLDDVDAALTEAQPQQSPHDNEADTPQQLLDSSLLPEEDAQ
SIADIDLDAESKTGQKEHIVRIVQRAVLESGETLKRRASTVGQNVQDAFT
NFVRDDGTVDVPALRLYLSNWLDNASMTWKRLNGFPSDSQSANSLESSLL
PPVTILGVRDEEREYQLREQIGDLEKQLFKNSKEREAVLRREDQLGKLIR
AKEIREMDDYVSSLRRTLAVRVLQLEMEKIFASIAVEIDNCDRETMNEQR
MMIVEFTDLDNRLGTLELFVEQQEPLLIEDGTVGELAGDIQYLKTRLGLG
EPLYSASTLSWPQVRQFMASSSKKTKAGIEFYSRGVRLFIGDLRFALRLI
RRAVTGYTPTPREIRTIRRTVKDLLTLIPFTIVLIAPLTPVGHVLIFSLL
QRYWPEFFPSTFSERRQALMRKYENYEKSLQKENGGSDDSDDTKASSESK
GPLASLLKMLVFGLFVGDSNKTETTEVDVELSGVDAKRKESIDLNTDSSL
QEPVPANGRPRVSLNDLSKAALDSKVIAQKDRGSIALDELHLAD*

spliced messenger RNA

>Gchil1555.t1 ID=Gchil1555.t1|Name=Gchil1555.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2085bp|location=Sequence derived from alignment at tig00004403_pilon:850054..852138+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCCTCCGTCCGCCGTTCTCGCCCATCTTTTGTGCCGCTGCTCGC
TCTCCAGCGTAGAGGGGCGCTGAACACCACCTGTCGAATATCTCCCCGTC
GCCGAATCATCCGCCGTCTGCAGAGCTGCGCTCAAGCTCCAGAGCCCGCC
CAAGCTCCAGAGCCCGCCCAAGTTGTCCGGCCGAGCACCACTTCTGCTCC
TGATGATGCCGCCCAACAGGTTCTTCAAGTCGGCCTGGTGAGCACGCGGG
TGCGTTTGTTGAACACACGCCTGATTGTTCGTCTGGCAGAGGCTAATATA
CGTCTCGCGCTCGGCCTCCTTGAGTTTTCTCCGCTCCAGACGGACACCCT
TTCGTATACGTCAGAAGCCCAAGCTGCTGCGCACAGGGTGCGAAAGGATT
TGCGCTCTATAAGACGGATAGCTGCCGAAGCCCCTGTTGACCATGACGCC
ACCACCCTCATTGCAAAGTTGGAACACGTTCTGGACGATGTGGATGCCGC
CCTGACAGAGGCTCAGCCTCAACAAAGCCCGCACGATAACGAAGCTGATA
CTCCCCAACAATTGCTTGATAGTTCTTTGCTTCCCGAAGAGGATGCGCAG
TCTATCGCAGACATTGACCTCGATGCAGAAAGCAAGACAGGCCAAAAGGA
ACACATTGTGCGTATCGTGCAGCGAGCGGTTTTGGAAAGTGGGGAAACTC
TTAAACGGCGTGCGAGCACTGTTGGCCAGAATGTTCAAGACGCGTTCACA
AATTTTGTTCGTGACGACGGAACCGTAGATGTTCCGGCGTTACGCTTGTA
TCTTTCAAATTGGTTGGATAACGCAAGTATGACGTGGAAGAGGCTAAATG
GGTTTCCATCCGATTCACAATCTGCAAATAGTTTGGAGAGCTCGCTGCTC
CCACCTGTCACCATATTGGGTGTGCGAGACGAAGAAAGGGAATACCAGTT
GAGAGAGCAGATTGGGGATCTTGAAAAGCAACTCTTCAAAAATAGTAAGG
AGCGAGAAGCAGTACTACGGCGCGAAGATCAGCTTGGCAAACTAATCCGC
GCAAAGGAGATTCGTGAAATGGATGATTACGTGAGCTCGCTGCGTCGAAC
GCTTGCTGTGCGAGTATTGCAGTTAGAGATGGAGAAGATATTTGCTAGCA
TCGCAGTAGAGATTGACAACTGTGACCGTGAGACAATGAATGAACAACGC
ATGATGATTGTCGAGTTTACAGACCTGGATAACCGTCTTGGCACACTCGA
GCTATTCGTTGAGCAACAGGAACCGCTTTTAATCGAGGATGGTACCGTAG
GCGAGTTAGCCGGAGATATACAATACTTGAAAACCCGTCTCGGCCTCGGC
GAGCCTCTGTACAGCGCTTCAACCTTGAGCTGGCCGCAAGTGCGTCAGTT
TATGGCTTCATCTTCAAAGAAAACTAAGGCTGGTATAGAATTCTACTCAA
GAGGTGTGCGGCTGTTTATCGGCGACTTGAGGTTCGCATTAAGGCTTATC
CGACGAGCCGTGACGGGATATACACCGACTCCTCGAGAAATCCGTACCAT
CCGAAGGACCGTGAAAGATCTGTTAACACTAATCCCGTTCACTATTGTTT
TGATTGCTCCTTTAACACCAGTTGGCCACGTTCTTATTTTCTCTCTCCTT
CAGCGATATTGGCCTGAATTCTTCCCATCTACTTTCAGTGAGAGACGACA
GGCGCTCATGCGCAAGTACGAAAACTATGAGAAGTCTCTTCAGAAAGAGA
ATGGCGGAAGTGACGATTCTGACGACACCAAGGCATCATCAGAGTCTAAG
GGGCCACTCGCATCTCTTCTTAAGATGCTTGTATTTGGATTATTTGTTGG
AGACTCCAACAAGACTGAGACCACGGAAGTAGATGTCGAGTTGAGTGGAG
TAGATGCAAAGCGGAAAGAAAGCATCGATTTGAATACCGATTCGAGCTTG
CAAGAGCCAGTCCCCGCAAACGGCCGACCTCGTGTTTCTCTTAATGATCT
GTCGAAAGCTGCGCTCGATAGCAAGGTAATAGCACAGAAGGATAGAGGTT
CTATTGCGTTGGATGAACTTCATCTAGCGGACTGA

protein sequence of Gchil1555.t1

>Gchil1555.t1 ID=Gchil1555.t1|Name=Gchil1555.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=695bp
MAASVRRSRPSFVPLLALQRRGALNTTCRISPRRRIIRRLQSCAQAPEPA
QAPEPAQVVRPSTTSAPDDAAQQVLQVGLVSTRVRLLNTRLIVRLAEANI
RLALGLLEFSPLQTDTLSYTSEAQAAAHRVRKDLRSIRRIAAEAPVDHDA
TTLIAKLEHVLDDVDAALTEAQPQQSPHDNEADTPQQLLDSSLLPEEDAQ
SIADIDLDAESKTGQKEHIVRIVQRAVLESGETLKRRASTVGQNVQDAFT
NFVRDDGTVDVPALRLYLSNWLDNASMTWKRLNGFPSDSQSANSLESSLL
PPVTILGVRDEEREYQLREQIGDLEKQLFKNSKEREAVLRREDQLGKLIR
AKEIREMDDYVSSLRRTLAVRVLQLEMEKIFASIAVEIDNCDRETMNEQR
MMIVEFTDLDNRLGTLELFVEQQEPLLIEDGTVGELAGDIQYLKTRLGLG
EPLYSASTLSWPQVRQFMASSSKKTKAGIEFYSRGVRLFIGDLRFALRLI
RRAVTGYTPTPREIRTIRRTVKDLLTLIPFTIVLIAPLTPVGHVLIFSLL
QRYWPEFFPSTFSERRQALMRKYENYEKSLQKENGGSDDSDDTKASSESK
GPLASLLKMLVFGLFVGDSNKTETTEVDVELSGVDAKRKESIDLNTDSSL
QEPVPANGRPRVSLNDLSKAALDSKVIAQKDRGSIALDELHLAD*

mRNA from alignment at tig00004403_pilon:850054..852138+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1555.t1 ID=Gchil1555.t1|Name=Gchil1555.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2085bp|location=Sequence derived from alignment at tig00004403_pilon:850054..852138+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCCTCCGTCCGCCGTTCTCGCCCATCTTTTGTGCCGCTGCTCGC
TCTCCAGCGTAGAGGGGCGCTGAACACCACCTGTCGAATATCTCCCCGTC
GCCGAATCATCCGCCGTCTGCAGAGCTGCGCTCAAGCTCCAGAGCCCGCC
CAAGCTCCAGAGCCCGCCCAAGTTGTCCGGCCGAGCACCACTTCTGCTCC
TGATGATGCCGCCCAACAGGTTCTTCAAGTCGGCCTGGTGAGCACGCGGG
TGCGTTTGTTGAACACACGCCTGATTGTTCGTCTGGCAGAGGCTAATATA
CGTCTCGCGCTCGGCCTCCTTGAGTTTTCTCCGCTCCAGACGGACACCCT
TTCGTATACGTCAGAAGCCCAAGCTGCTGCGCACAGGGTGCGAAAGGATT
TGCGCTCTATAAGACGGATAGCTGCCGAAGCCCCTGTTGACCATGACGCC
ACCACCCTCATTGCAAAGTTGGAACACGTTCTGGACGATGTGGATGCCGC
CCTGACAGAGGCTCAGCCTCAACAAAGCCCGCACGATAACGAAGCTGATA
CTCCCCAACAATTGCTTGATAGTTCTTTGCTTCCCGAAGAGGATGCGCAG
TCTATCGCAGACATTGACCTCGATGCAGAAAGCAAGACAGGCCAAAAGGA
ACACATTGTGCGTATCGTGCAGCGAGCGGTTTTGGAAAGTGGGGAAACTC
TTAAACGGCGTGCGAGCACTGTTGGCCAGAATGTTCAAGACGCGTTCACA
AATTTTGTTCGTGACGACGGAACCGTAGATGTTCCGGCGTTACGCTTGTA
TCTTTCAAATTGGTTGGATAACGCAAGTATGACGTGGAAGAGGCTAAATG
GGTTTCCATCCGATTCACAATCTGCAAATAGTTTGGAGAGCTCGCTGCTC
CCACCTGTCACCATATTGGGTGTGCGAGACGAAGAAAGGGAATACCAGTT
GAGAGAGCAGATTGGGGATCTTGAAAAGCAACTCTTCAAAAATAGTAAGG
AGCGAGAAGCAGTACTACGGCGCGAAGATCAGCTTGGCAAACTAATCCGC
GCAAAGGAGATTCGTGAAATGGATGATTACGTGAGCTCGCTGCGTCGAAC
GCTTGCTGTGCGAGTATTGCAGTTAGAGATGGAGAAGATATTTGCTAGCA
TCGCAGTAGAGATTGACAACTGTGACCGTGAGACAATGAATGAACAACGC
ATGATGATTGTCGAGTTTACAGACCTGGATAACCGTCTTGGCACACTCGA
GCTATTCGTTGAGCAACAGGAACCGCTTTTAATCGAGGATGGTACCGTAG
GCGAGTTAGCCGGAGATATACAATACTTGAAAACCCGTCTCGGCCTCGGC
GAGCCTCTGTACAGCGCTTCAACCTTGAGCTGGCCGCAAGTGCGTCAGTT
TATGGCTTCATCTTCAAAGAAAACTAAGGCTGGTATAGAATTCTACTCAA
GAGGTGTGCGGCTGTTTATCGGCGACTTGAGGTTCGCATTAAGGCTTATC
CGACGAGCCGTGACGGGATATACACCGACTCCTCGAGAAATCCGTACCAT
CCGAAGGACCGTGAAAGATCTGTTAACACTAATCCCGTTCACTATTGTTT
TGATTGCTCCTTTAACACCAGTTGGCCACGTTCTTATTTTCTCTCTCCTT
CAGCGATATTGGCCTGAATTCTTCCCATCTACTTTCAGTGAGAGACGACA
GGCGCTCATGCGCAAGTACGAAAACTATGAGAAGTCTCTTCAGAAAGAGA
ATGGCGGAAGTGACGATTCTGACGACACCAAGGCATCATCAGAGTCTAAG
GGGCCACTCGCATCTCTTCTTAAGATGCTTGTATTTGGATTATTTGTTGG
AGACTCCAACAAGACTGAGACCACGGAAGTAGATGTCGAGTTGAGTGGAG
TAGATGCAAAGCGGAAAGAAAGCATCGATTTGAATACCGATTCGAGCTTG
CAAGAGCCAGTCCCCGCAAACGGCCGACCTCGTGTTTCTCTTAATGATCT
GTCGAAAGCTGCGCTCGATAGCAAGGTAATAGCACAGAAGGATAGAGGTT
CTATTGCGTTGGATGAACTTCATCTAGCGGACTGA

Coding sequence (CDS) from alignment at tig00004403_pilon:850054..852138+

>Gchil1555.t1 ID=Gchil1555.t1|Name=Gchil1555.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2085bp|location=Sequence derived from alignment at tig00004403_pilon:850054..852138+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCCTCCGTCCGCCGTTCTCGCCCATCTTTTGTGCCGCTGCTCGC
TCTCCAGCGTAGAGGGGCGCTGAACACCACCTGTCGAATATCTCCCCGTC
GCCGAATCATCCGCCGTCTGCAGAGCTGCGCTCAAGCTCCAGAGCCCGCC
CAAGCTCCAGAGCCCGCCCAAGTTGTCCGGCCGAGCACCACTTCTGCTCC
TGATGATGCCGCCCAACAGGTTCTTCAAGTCGGCCTGGTGAGCACGCGGG
TGCGTTTGTTGAACACACGCCTGATTGTTCGTCTGGCAGAGGCTAATATA
CGTCTCGCGCTCGGCCTCCTTGAGTTTTCTCCGCTCCAGACGGACACCCT
TTCGTATACGTCAGAAGCCCAAGCTGCTGCGCACAGGGTGCGAAAGGATT
TGCGCTCTATAAGACGGATAGCTGCCGAAGCCCCTGTTGACCATGACGCC
ACCACCCTCATTGCAAAGTTGGAACACGTTCTGGACGATGTGGATGCCGC
CCTGACAGAGGCTCAGCCTCAACAAAGCCCGCACGATAACGAAGCTGATA
CTCCCCAACAATTGCTTGATAGTTCTTTGCTTCCCGAAGAGGATGCGCAG
TCTATCGCAGACATTGACCTCGATGCAGAAAGCAAGACAGGCCAAAAGGA
ACACATTGTGCGTATCGTGCAGCGAGCGGTTTTGGAAAGTGGGGAAACTC
TTAAACGGCGTGCGAGCACTGTTGGCCAGAATGTTCAAGACGCGTTCACA
AATTTTGTTCGTGACGACGGAACCGTAGATGTTCCGGCGTTACGCTTGTA
TCTTTCAAATTGGTTGGATAACGCAAGTATGACGTGGAAGAGGCTAAATG
GGTTTCCATCCGATTCACAATCTGCAAATAGTTTGGAGAGCTCGCTGCTC
CCACCTGTCACCATATTGGGTGTGCGAGACGAAGAAAGGGAATACCAGTT
GAGAGAGCAGATTGGGGATCTTGAAAAGCAACTCTTCAAAAATAGTAAGG
AGCGAGAAGCAGTACTACGGCGCGAAGATCAGCTTGGCAAACTAATCCGC
GCAAAGGAGATTCGTGAAATGGATGATTACGTGAGCTCGCTGCGTCGAAC
GCTTGCTGTGCGAGTATTGCAGTTAGAGATGGAGAAGATATTTGCTAGCA
TCGCAGTAGAGATTGACAACTGTGACCGTGAGACAATGAATGAACAACGC
ATGATGATTGTCGAGTTTACAGACCTGGATAACCGTCTTGGCACACTCGA
GCTATTCGTTGAGCAACAGGAACCGCTTTTAATCGAGGATGGTACCGTAG
GCGAGTTAGCCGGAGATATACAATACTTGAAAACCCGTCTCGGCCTCGGC
GAGCCTCTGTACAGCGCTTCAACCTTGAGCTGGCCGCAAGTGCGTCAGTT
TATGGCTTCATCTTCAAAGAAAACTAAGGCTGGTATAGAATTCTACTCAA
GAGGTGTGCGGCTGTTTATCGGCGACTTGAGGTTCGCATTAAGGCTTATC
CGACGAGCCGTGACGGGATATACACCGACTCCTCGAGAAATCCGTACCAT
CCGAAGGACCGTGAAAGATCTGTTAACACTAATCCCGTTCACTATTGTTT
TGATTGCTCCTTTAACACCAGTTGGCCACGTTCTTATTTTCTCTCTCCTT
CAGCGATATTGGCCTGAATTCTTCCCATCTACTTTCAGTGAGAGACGACA
GGCGCTCATGCGCAAGTACGAAAACTATGAGAAGTCTCTTCAGAAAGAGA
ATGGCGGAAGTGACGATTCTGACGACACCAAGGCATCATCAGAGTCTAAG
GGGCCACTCGCATCTCTTCTTAAGATGCTTGTATTTGGATTATTTGTTGG
AGACTCCAACAAGACTGAGACCACGGAAGTAGATGTCGAGTTGAGTGGAG
TAGATGCAAAGCGGAAAGAAAGCATCGATTTGAATACCGATTCGAGCTTG
CAAGAGCCAGTCCCCGCAAACGGCCGACCTCGTGTTTCTCTTAATGATCT
GTCGAAAGCTGCGCTCGATAGCAAGGTAATAGCACAGAAGGATAGAGGTT
CTATTGCGTTGGATGAACTTCATCTAGCGGACTGA