Gchil1554.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1554.t1
Unique NameGchil1554.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:847880..849319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMG148CT
Preferred nameDXR
PFAMsDXPR_C,DXP_redisom_C,DXP_reductoisom
Max annot lvl2759|Eukaryota
KEGG rclassRC01452
KEGG koko:K00099
KEGG ReactionR05688
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576
Evalue9.37e-172
EggNOG OGsCOG0020@1|root,2QPJ7@2759|Eukaryota
EC1.1.1.267
Description1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1554Gchil1554Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 847880..849319 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1554.t1.stop1Gchil1554.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 847880..847882 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1554.t1.CDS1Gchil1554.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 847880..849319 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1554.t1.exon1Gchil1554.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 847880..849319 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1554.t1.start1Gchil1554.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 849317..849319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1554.t1Gchil1554.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 847880..849319 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1554.t1 ID=Gchil1554.t1|Name=Gchil1554.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=480bp
MHAFIKLPSSTLLSPSPSSRSSFIAPNHGVTTHRNRPAPHRRRHSLQVTL
ALQQGAAPVGTDDALQEAVRRATSEGHNFSRRISVLGSTGSIGTQTLDLV
REVPQFFSVASLSAASNVDLLVEQAREFSPDMVCILDESRAAELRQKLDH
AGCSSIKHAAGKDGIVQAAADTDAQVVVTGIVGCAGLLPTVAAIRAGKDI
ALANKETLIAGGPVVVPLVKEYGISMTAADSEHSAIFQCLQGAPSKALRR
IILTASGGAFRDWNAADLHKVTLADALKHPNWSMGAKITIDSASLYNKAA
EVIEAHYLFGADYDHIDAVIHKQSIIHSLVEFEDSSVLAQLGWPDMRLPL
LYAISWPHRIPVPSFKPLDLVQVGSLTFQEVDRAKYPNMDLAYTAGRKAG
TMTCVLNAANEAAVELFREEKIHFLDIPRINQAMMEMHSDEFIQKPTLDD
IVHFDQVTRTYAREYVSSGRLTQKFAALK*
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spliced messenger RNA

>Gchil1554.t1 ID=Gchil1554.t1|Name=Gchil1554.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00004403_pilon:847880..849319- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGCGTTTATTAAGCTTCCGTCATCAACGTTGCTCTCGCCCTCGCC
CTCGTCCCGCAGTTCATTCATCGCTCCGAACCACGGAGTCACCACCCATC
GCAACAGACCCGCACCACATCGACGCCGCCATTCGCTCCAGGTCACCCTC
GCCCTGCAGCAAGGAGCCGCCCCGGTCGGCACTGATGATGCGCTTCAAGA
AGCCGTGCGTCGCGCAACCTCCGAAGGGCACAATTTTTCCCGCCGCATCT
CTGTACTCGGCTCCACCGGCTCCATCGGCACGCAAACGCTCGACCTCGTC
CGCGAGGTGCCCCAGTTTTTCTCCGTCGCTTCGCTGTCAGCAGCTTCCAA
TGTCGATCTTCTCGTCGAGCAAGCGCGCGAGTTTTCGCCCGACATGGTTT
GCATTCTGGATGAGTCACGAGCAGCTGAGTTGCGTCAAAAGCTAGATCAC
GCTGGTTGTTCTTCCATCAAGCACGCTGCTGGTAAGGATGGCATTGTGCA
AGCTGCAGCCGACACAGATGCCCAAGTCGTTGTTACAGGCATTGTGGGTT
GTGCTGGTTTATTGCCCACTGTAGCTGCTATTCGCGCCGGGAAGGACATC
GCGCTAGCGAACAAAGAAACCCTAATAGCCGGAGGGCCAGTTGTGGTCCC
ACTTGTCAAGGAATACGGCATCAGCATGACTGCCGCTGATTCCGAACATT
CTGCCATCTTTCAATGCCTACAAGGTGCACCTTCGAAAGCCTTGCGCCGT
ATCATCTTGACCGCGTCAGGTGGCGCATTCCGCGACTGGAATGCTGCTGA
TTTACACAAGGTTACCCTTGCTGATGCCTTGAAACATCCTAACTGGAGCA
TGGGCGCTAAGATTACCATCGACTCTGCAAGTTTGTACAACAAGGCTGCC
GAGGTGATTGAAGCTCACTACCTTTTCGGGGCTGACTATGACCACATCGA
TGCTGTCATACACAAGCAATCCATCATTCATTCTCTAGTTGAGTTTGAAG
ATTCGTCTGTTCTGGCACAATTAGGCTGGCCAGACATGCGTTTACCACTC
TTGTATGCCATTTCGTGGCCACATCGAATCCCAGTACCATCCTTCAAACC
ACTGGATCTCGTGCAAGTGGGCTCCTTGACGTTTCAGGAAGTGGATCGAG
CGAAATATCCGAATATGGATTTAGCGTACACAGCCGGTCGAAAAGCGGGC
ACCATGACATGCGTCTTAAACGCTGCAAATGAAGCTGCTGTGGAATTATT
CCGTGAAGAAAAGATTCACTTTCTCGACATTCCGAGAATCAATCAAGCCA
TGATGGAAATGCACAGCGACGAGTTCATCCAGAAACCCACGCTCGATGAT
ATTGTACATTTCGATCAAGTGACAAGAACGTACGCCAGGGAATATGTATC
CTCTGGTAGGCTAACGCAAAAGTTTGCCGCGCTGAAGTAA
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protein sequence of Gchil1554.t1

>Gchil1554.t1 ID=Gchil1554.t1|Name=Gchil1554.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=480bp
MHAFIKLPSSTLLSPSPSSRSSFIAPNHGVTTHRNRPAPHRRRHSLQVTL
ALQQGAAPVGTDDALQEAVRRATSEGHNFSRRISVLGSTGSIGTQTLDLV
REVPQFFSVASLSAASNVDLLVEQAREFSPDMVCILDESRAAELRQKLDH
AGCSSIKHAAGKDGIVQAAADTDAQVVVTGIVGCAGLLPTVAAIRAGKDI
ALANKETLIAGGPVVVPLVKEYGISMTAADSEHSAIFQCLQGAPSKALRR
IILTASGGAFRDWNAADLHKVTLADALKHPNWSMGAKITIDSASLYNKAA
EVIEAHYLFGADYDHIDAVIHKQSIIHSLVEFEDSSVLAQLGWPDMRLPL
LYAISWPHRIPVPSFKPLDLVQVGSLTFQEVDRAKYPNMDLAYTAGRKAG
TMTCVLNAANEAAVELFREEKIHFLDIPRINQAMMEMHSDEFIQKPTLDD
IVHFDQVTRTYAREYVSSGRLTQKFAALK*
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mRNA from alignment at tig00004403_pilon:847880..849319-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1554.t1 ID=Gchil1554.t1|Name=Gchil1554.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00004403_pilon:847880..849319- (Gracilaria chilensis NLEC103_M9 male)
ATGCACGCGTTTATTAAGCTTCCGTCATCAACGTTGCTCTCGCCCTCGCC
CTCGTCCCGCAGTTCATTCATCGCTCCGAACCACGGAGTCACCACCCATC
GCAACAGACCCGCACCACATCGACGCCGCCATTCGCTCCAGGTCACCCTC
GCCCTGCAGCAAGGAGCCGCCCCGGTCGGCACTGATGATGCGCTTCAAGA
AGCCGTGCGTCGCGCAACCTCCGAAGGGCACAATTTTTCCCGCCGCATCT
CTGTACTCGGCTCCACCGGCTCCATCGGCACGCAAACGCTCGACCTCGTC
CGCGAGGTGCCCCAGTTTTTCTCCGTCGCTTCGCTGTCAGCAGCTTCCAA
TGTCGATCTTCTCGTCGAGCAAGCGCGCGAGTTTTCGCCCGACATGGTTT
GCATTCTGGATGAGTCACGAGCAGCTGAGTTGCGTCAAAAGCTAGATCAC
GCTGGTTGTTCTTCCATCAAGCACGCTGCTGGTAAGGATGGCATTGTGCA
AGCTGCAGCCGACACAGATGCCCAAGTCGTTGTTACAGGCATTGTGGGTT
GTGCTGGTTTATTGCCCACTGTAGCTGCTATTCGCGCCGGGAAGGACATC
GCGCTAGCGAACAAAGAAACCCTAATAGCCGGAGGGCCAGTTGTGGTCCC
ACTTGTCAAGGAATACGGCATCAGCATGACTGCCGCTGATTCCGAACATT
CTGCCATCTTTCAATGCCTACAAGGTGCACCTTCGAAAGCCTTGCGCCGT
ATCATCTTGACCGCGTCAGGTGGCGCATTCCGCGACTGGAATGCTGCTGA
TTTACACAAGGTTACCCTTGCTGATGCCTTGAAACATCCTAACTGGAGCA
TGGGCGCTAAGATTACCATCGACTCTGCAAGTTTGTACAACAAGGCTGCC
GAGGTGATTGAAGCTCACTACCTTTTCGGGGCTGACTATGACCACATCGA
TGCTGTCATACACAAGCAATCCATCATTCATTCTCTAGTTGAGTTTGAAG
ATTCGTCTGTTCTGGCACAATTAGGCTGGCCAGACATGCGTTTACCACTC
TTGTATGCCATTTCGTGGCCACATCGAATCCCAGTACCATCCTTCAAACC
ACTGGATCTCGTGCAAGTGGGCTCCTTGACGTTTCAGGAAGTGGATCGAG
CGAAATATCCGAATATGGATTTAGCGTACACAGCCGGTCGAAAAGCGGGC
ACCATGACATGCGTCTTAAACGCTGCAAATGAAGCTGCTGTGGAATTATT
CCGTGAAGAAAAGATTCACTTTCTCGACATTCCGAGAATCAATCAAGCCA
TGATGGAAATGCACAGCGACGAGTTCATCCAGAAACCCACGCTCGATGAT
ATTGTACATTTCGATCAAGTGACAAGAACGTACGCCAGGGAATATGTATC
CTCTGGTAGGCTAACGCAAAAGTTTGCCGCGCTGAAGTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:847880..849319-

>Gchil1554.t1 ID=Gchil1554.t1|Name=Gchil1554.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1440bp|location=Sequence derived from alignment at tig00004403_pilon:847880..849319- (Gracilaria chilensis NLEC103_M9 male)
ATGCACGCGTTTATTAAGCTTCCGTCATCAACGTTGCTCTCGCCCTCGCC
CTCGTCCCGCAGTTCATTCATCGCTCCGAACCACGGAGTCACCACCCATC
GCAACAGACCCGCACCACATCGACGCCGCCATTCGCTCCAGGTCACCCTC
GCCCTGCAGCAAGGAGCCGCCCCGGTCGGCACTGATGATGCGCTTCAAGA
AGCCGTGCGTCGCGCAACCTCCGAAGGGCACAATTTTTCCCGCCGCATCT
CTGTACTCGGCTCCACCGGCTCCATCGGCACGCAAACGCTCGACCTCGTC
CGCGAGGTGCCCCAGTTTTTCTCCGTCGCTTCGCTGTCAGCAGCTTCCAA
TGTCGATCTTCTCGTCGAGCAAGCGCGCGAGTTTTCGCCCGACATGGTTT
GCATTCTGGATGAGTCACGAGCAGCTGAGTTGCGTCAAAAGCTAGATCAC
GCTGGTTGTTCTTCCATCAAGCACGCTGCTGGTAAGGATGGCATTGTGCA
AGCTGCAGCCGACACAGATGCCCAAGTCGTTGTTACAGGCATTGTGGGTT
GTGCTGGTTTATTGCCCACTGTAGCTGCTATTCGCGCCGGGAAGGACATC
GCGCTAGCGAACAAAGAAACCCTAATAGCCGGAGGGCCAGTTGTGGTCCC
ACTTGTCAAGGAATACGGCATCAGCATGACTGCCGCTGATTCCGAACATT
CTGCCATCTTTCAATGCCTACAAGGTGCACCTTCGAAAGCCTTGCGCCGT
ATCATCTTGACCGCGTCAGGTGGCGCATTCCGCGACTGGAATGCTGCTGA
TTTACACAAGGTTACCCTTGCTGATGCCTTGAAACATCCTAACTGGAGCA
TGGGCGCTAAGATTACCATCGACTCTGCAAGTTTGTACAACAAGGCTGCC
GAGGTGATTGAAGCTCACTACCTTTTCGGGGCTGACTATGACCACATCGA
TGCTGTCATACACAAGCAATCCATCATTCATTCTCTAGTTGAGTTTGAAG
ATTCGTCTGTTCTGGCACAATTAGGCTGGCCAGACATGCGTTTACCACTC
TTGTATGCCATTTCGTGGCCACATCGAATCCCAGTACCATCCTTCAAACC
ACTGGATCTCGTGCAAGTGGGCTCCTTGACGTTTCAGGAAGTGGATCGAG
CGAAATATCCGAATATGGATTTAGCGTACACAGCCGGTCGAAAAGCGGGC
ACCATGACATGCGTCTTAAACGCTGCAAATGAAGCTGCTGTGGAATTATT
CCGTGAAGAAAAGATTCACTTTCTCGACATTCCGAGAATCAATCAAGCCA
TGATGGAAATGCACAGCGACGAGTTCATCCAGAAACCCACGCTCGATGAT
ATTGTACATTTCGATCAAGTGACAAGAACGTACGCCAGGGAATATGTATC
CTCTGGTAGGCTAACGCAAAAGTTTGCCGCGCTGAAGTAA
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