Gchil1551.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1551.t1
Unique Name	Gchil1551.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	497

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:842883..844373 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705417.1
PFAMs	Radical_SAM,UPF0004
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00003,RC03217
KEGG ko	ko:K14441
KEGG Reaction	R10652
Evalue	2.03e-160
EggNOG OGs	COG0621@1\|root,KOG2492@2759\|Eukaryota
EC	2.8.4.4
Description	N6-isopentenyladenosine methylthiotransferase activity
COG category	J
BRITE	ko00000,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1551	Gchil1551	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 842883..844373 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1551.t1.start1	Gchil1551.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 842883..842885 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1551.t1.CDS1	Gchil1551.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 842883..844373 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1551.t1.exon1	Gchil1551.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 842883..844373 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1551.t1.stop1	Gchil1551.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 844371..844373 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1551.t1	Gchil1551.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 842883..844373 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:842883..844373+
coding sequence from alignment at tig00004403_pilon:842883..844373+

mRNA sequence

>Gchil1551.t1 ID=Gchil1551.t1|Name=Gchil1551.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=497bp
MFQSKISFVAPTLAKAFPYVRGRGCSPCRKHPSATAVQPTTSISASKTAP
PTVALVSLGCPKNVTDAEVMLADFFKNDIKIQAPDSETPADVVVVNTCGF
VDDAKRESINSILDAAKGKKNGTKGVIVTGCLAQRYADLLAEELPEVDAV
VGFEHYHELPQRVKALAANERGSPIEKVKVGAIDVPFRPEHERVRLGPKH
SVYVRLAEGCSHSCTFCAIPGQFRGKFRSKQWNTLTREIDTLVAAGAREL
VFIAEDTNQYGMDFPPEESRRLSHLLHHVAKNNTDAKWLRLLYCYPSYFT
NDLIRAIADLDVVCKYIDIPLQHISDSVLRRMNRPGRQHTEELLNRLRQG
IPDLALRTTFIVGFPGETEEDHQELVDFIMQKRFHHAGFFVYSEEEGTPA
ATFANQVPIELREYRRDELVSIQQRIQEEIALEQVGKVLDVIVDRIEDGH
SIGRCRFDAPEVDGSVHILQIIEPGTILKVRILGTSSFDLYGEPAE*

spliced messenger RNA

>Gchil1551.t1 ID=Gchil1551.t1|Name=Gchil1551.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00004403_pilon:842883..844373+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCAGTCGAAAATATCGTTTGTAGCGCCAACGCTGGCCAAGGCATT
TCCGTACGTTCGTGGGCGAGGATGCTCTCCATGCCGCAAGCATCCTTCAG
CAACAGCCGTTCAGCCAACAACATCAATTTCAGCTTCAAAAACCGCACCG
CCGACAGTTGCACTCGTCTCTTTAGGATGCCCAAAGAACGTCACTGACGC
AGAGGTCATGCTTGCCGATTTTTTTAAGAATGATATCAAGATCCAGGCCC
CTGATTCTGAAACTCCGGCAGATGTCGTCGTTGTGAATACCTGCGGTTTC
GTTGATGATGCTAAACGAGAATCTATTAATTCCATTCTTGATGCAGCCAA
AGGGAAAAAAAACGGGACAAAGGGAGTCATAGTTACTGGCTGCCTTGCCC
AAAGATATGCAGACCTCCTTGCTGAAGAGCTACCAGAAGTAGATGCAGTC
GTGGGATTTGAACACTACCATGAACTTCCTCAACGTGTGAAAGCTCTGGC
AGCAAATGAAAGAGGAAGCCCTATCGAAAAAGTCAAGGTTGGTGCAATTG
ATGTTCCATTTCGACCAGAACACGAGCGTGTGCGCCTGGGCCCAAAGCAC
TCTGTTTATGTTCGCTTGGCAGAGGGTTGCTCTCACTCCTGTACGTTTTG
CGCTATTCCAGGCCAGTTCAGGGGGAAATTTCGATCAAAGCAATGGAACA
CCTTAACTAGAGAAATTGACACTTTGGTTGCCGCTGGGGCTAGAGAACTA
GTCTTCATCGCTGAGGATACGAACCAATATGGTATGGATTTCCCTCCGGA
GGAAAGCCGGAGGCTAAGCCATCTACTCCACCACGTTGCGAAGAACAATA
CGGATGCAAAATGGCTACGCCTCTTATACTGCTACCCATCTTACTTCACA
AATGACCTAATCAGAGCTATCGCAGATCTCGATGTTGTATGCAAATATAT
CGACATTCCTCTCCAGCATATATCTGATAGTGTGCTACGTCGAATGAATC
GACCTGGGAGACAGCACACCGAGGAGCTTTTGAATAGATTACGACAAGGA
ATCCCCGACCTTGCCCTTCGGACAACTTTCATTGTCGGGTTTCCGGGGGA
GACAGAAGAGGATCACCAAGAATTAGTAGATTTTATTATGCAGAAACGTT
TCCATCATGCAGGTTTCTTCGTTTACAGCGAGGAAGAAGGCACGCCAGCG
GCGACGTTCGCGAACCAAGTACCTATAGAGCTTCGAGAGTACAGACGAGA
TGAGCTTGTGTCCATACAACAGCGTATACAAGAGGAAATCGCATTGGAAC
AGGTCGGAAAAGTTCTTGACGTGATTGTGGACAGGATTGAAGACGGGCAC
TCAATTGGGCGTTGCCGATTTGATGCCCCTGAAGTTGATGGTAGCGTCCA
TATTTTACAGATAATAGAACCGGGAACCATATTGAAAGTTAGAATCTTAG
GAACATCATCTTTCGATCTTTATGGAGAACCAGCGGAATAA

protein sequence of Gchil1551.t1

>Gchil1551.t1 ID=Gchil1551.t1|Name=Gchil1551.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=497bp
MFQSKISFVAPTLAKAFPYVRGRGCSPCRKHPSATAVQPTTSISASKTAP
PTVALVSLGCPKNVTDAEVMLADFFKNDIKIQAPDSETPADVVVVNTCGF
VDDAKRESINSILDAAKGKKNGTKGVIVTGCLAQRYADLLAEELPEVDAV
VGFEHYHELPQRVKALAANERGSPIEKVKVGAIDVPFRPEHERVRLGPKH
SVYVRLAEGCSHSCTFCAIPGQFRGKFRSKQWNTLTREIDTLVAAGAREL
VFIAEDTNQYGMDFPPEESRRLSHLLHHVAKNNTDAKWLRLLYCYPSYFT
NDLIRAIADLDVVCKYIDIPLQHISDSVLRRMNRPGRQHTEELLNRLRQG
IPDLALRTTFIVGFPGETEEDHQELVDFIMQKRFHHAGFFVYSEEEGTPA
ATFANQVPIELREYRRDELVSIQQRIQEEIALEQVGKVLDVIVDRIEDGH
SIGRCRFDAPEVDGSVHILQIIEPGTILKVRILGTSSFDLYGEPAE*

mRNA from alignment at tig00004403_pilon:842883..844373+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1551.t1 ID=Gchil1551.t1|Name=Gchil1551.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00004403_pilon:842883..844373+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTCAGTCGAAAATATCGTTTGTAGCGCCAACGCTGGCCAAGGCATT
TCCGTACGTTCGTGGGCGAGGATGCTCTCCATGCCGCAAGCATCCTTCAG
CAACAGCCGTTCAGCCAACAACATCAATTTCAGCTTCAAAAACCGCACCG
CCGACAGTTGCACTCGTCTCTTTAGGATGCCCAAAGAACGTCACTGACGC
AGAGGTCATGCTTGCCGATTTTTTTAAGAATGATATCAAGATCCAGGCCC
CTGATTCTGAAACTCCGGCAGATGTCGTCGTTGTGAATACCTGCGGTTTC
GTTGATGATGCTAAACGAGAATCTATTAATTCCATTCTTGATGCAGCCAA
AGGGAAAAAAAACGGGACAAAGGGAGTCATAGTTACTGGCTGCCTTGCCC
AAAGATATGCAGACCTCCTTGCTGAAGAGCTACCAGAAGTAGATGCAGTC
GTGGGATTTGAACACTACCATGAACTTCCTCAACGTGTGAAAGCTCTGGC
AGCAAATGAAAGAGGAAGCCCTATCGAAAAAGTCAAGGTTGGTGCAATTG
ATGTTCCATTTCGACCAGAACACGAGCGTGTGCGCCTGGGCCCAAAGCAC
TCTGTTTATGTTCGCTTGGCAGAGGGTTGCTCTCACTCCTGTACGTTTTG
CGCTATTCCAGGCCAGTTCAGGGGGAAATTTCGATCAAAGCAATGGAACA
CCTTAACTAGAGAAATTGACACTTTGGTTGCCGCTGGGGCTAGAGAACTA
GTCTTCATCGCTGAGGATACGAACCAATATGGTATGGATTTCCCTCCGGA
GGAAAGCCGGAGGCTAAGCCATCTACTCCACCACGTTGCGAAGAACAATA
CGGATGCAAAATGGCTACGCCTCTTATACTGCTACCCATCTTACTTCACA
AATGACCTAATCAGAGCTATCGCAGATCTCGATGTTGTATGCAAATATAT
CGACATTCCTCTCCAGCATATATCTGATAGTGTGCTACGTCGAATGAATC
GACCTGGGAGACAGCACACCGAGGAGCTTTTGAATAGATTACGACAAGGA
ATCCCCGACCTTGCCCTTCGGACAACTTTCATTGTCGGGTTTCCGGGGGA
GACAGAAGAGGATCACCAAGAATTAGTAGATTTTATTATGCAGAAACGTT
TCCATCATGCAGGTTTCTTCGTTTACAGCGAGGAAGAAGGCACGCCAGCG
GCGACGTTCGCGAACCAAGTACCTATAGAGCTTCGAGAGTACAGACGAGA
TGAGCTTGTGTCCATACAACAGCGTATACAAGAGGAAATCGCATTGGAAC
AGGTCGGAAAAGTTCTTGACGTGATTGTGGACAGGATTGAAGACGGGCAC
TCAATTGGGCGTTGCCGATTTGATGCCCCTGAAGTTGATGGTAGCGTCCA
TATTTTACAGATAATAGAACCGGGAACCATATTGAAAGTTAGAATCTTAG
GAACATCATCTTTCGATCTTTATGGAGAACCAGCGGAATAA

Coding sequence (CDS) from alignment at tig00004403_pilon:842883..844373+

>Gchil1551.t1 ID=Gchil1551.t1|Name=Gchil1551.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1491bp|location=Sequence derived from alignment at tig00004403_pilon:842883..844373+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTCAGTCGAAAATATCGTTTGTAGCGCCAACGCTGGCCAAGGCATT
TCCGTACGTTCGTGGGCGAGGATGCTCTCCATGCCGCAAGCATCCTTCAG
CAACAGCCGTTCAGCCAACAACATCAATTTCAGCTTCAAAAACCGCACCG
CCGACAGTTGCACTCGTCTCTTTAGGATGCCCAAAGAACGTCACTGACGC
AGAGGTCATGCTTGCCGATTTTTTTAAGAATGATATCAAGATCCAGGCCC
CTGATTCTGAAACTCCGGCAGATGTCGTCGTTGTGAATACCTGCGGTTTC
GTTGATGATGCTAAACGAGAATCTATTAATTCCATTCTTGATGCAGCCAA
AGGGAAAAAAAACGGGACAAAGGGAGTCATAGTTACTGGCTGCCTTGCCC
AAAGATATGCAGACCTCCTTGCTGAAGAGCTACCAGAAGTAGATGCAGTC
GTGGGATTTGAACACTACCATGAACTTCCTCAACGTGTGAAAGCTCTGGC
AGCAAATGAAAGAGGAAGCCCTATCGAAAAAGTCAAGGTTGGTGCAATTG
ATGTTCCATTTCGACCAGAACACGAGCGTGTGCGCCTGGGCCCAAAGCAC
TCTGTTTATGTTCGCTTGGCAGAGGGTTGCTCTCACTCCTGTACGTTTTG
CGCTATTCCAGGCCAGTTCAGGGGGAAATTTCGATCAAAGCAATGGAACA
CCTTAACTAGAGAAATTGACACTTTGGTTGCCGCTGGGGCTAGAGAACTA
GTCTTCATCGCTGAGGATACGAACCAATATGGTATGGATTTCCCTCCGGA
GGAAAGCCGGAGGCTAAGCCATCTACTCCACCACGTTGCGAAGAACAATA
CGGATGCAAAATGGCTACGCCTCTTATACTGCTACCCATCTTACTTCACA
AATGACCTAATCAGAGCTATCGCAGATCTCGATGTTGTATGCAAATATAT
CGACATTCCTCTCCAGCATATATCTGATAGTGTGCTACGTCGAATGAATC
GACCTGGGAGACAGCACACCGAGGAGCTTTTGAATAGATTACGACAAGGA
ATCCCCGACCTTGCCCTTCGGACAACTTTCATTGTCGGGTTTCCGGGGGA
GACAGAAGAGGATCACCAAGAATTAGTAGATTTTATTATGCAGAAACGTT
TCCATCATGCAGGTTTCTTCGTTTACAGCGAGGAAGAAGGCACGCCAGCG
GCGACGTTCGCGAACCAAGTACCTATAGAGCTTCGAGAGTACAGACGAGA
TGAGCTTGTGTCCATACAACAGCGTATACAAGAGGAAATCGCATTGGAAC
AGGTCGGAAAAGTTCTTGACGTGATTGTGGACAGGATTGAAGACGGGCAC
TCAATTGGGCGTTGCCGATTTGATGCCCCTGAAGTTGATGGTAGCGTCCA
TATTTTACAGATAATAGAACCGGGAACCATATTGAAAGTTAGAATCTTAG
GAACATCATCTTTCGATCTTTATGGAGAACCAGCGGAATAA