Gchil1542.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1542.t1
Unique Name	Gchil1542.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	744

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:822537..824768 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703199.1
PFAMs	ABC1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08869
Evalue	1.28e-212
EggNOG OGs	COG0661@1\|root,KOG1235@2759\|Eukaryota
Description	regulation of tocopherol cyclase activity
COG category	E
BRITE	ko00000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1542	Gchil1542	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 822537..824768 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1542.t1.start1	Gchil1542.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 822537..822539 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1542.t1.CDS1	Gchil1542.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 822537..824768 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1542.t1.exon1	Gchil1542.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 822537..824768 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1542.t1.stop1	Gchil1542.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 824766..824768 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1542.t1	Gchil1542.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 822537..824768 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:822537..824768+
coding sequence from alignment at tig00004403_pilon:822537..824768+

mRNA sequence

>Gchil1542.t1 ID=Gchil1542.t1|Name=Gchil1542.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=744bp
MAAYRRATLGLRPLSFISSTSFLQTKKLTSIPSSTSSSSRRLSSHNPKSN
TYPRATIALPQVSAEEALQPAVRIAQVSNVGGDDLGLPLEFDQDAIEKYW
NKRSTALTKRLAEVTAVFTPWIVRISADAAKGTLKQNGAKRAAELRDVLT
TLGPTFVKLGQALSVRPDIIGPEAMNELRLLCDAVPSFSNEIAFQMMEQE
LGRPVNEVYSEISDKPIAAASLGQVYKARLRSNGKEVAIKVQRPDMLRKV
SLDLYCMKRVARLIEAVQGQFTAAQTDYTSLLLEWSKGTYKELDYENEAE
NSRRFARLVQARLPDVYVPKVYDEYTSRKVLTMEWINGKKLSDCNPEQIN
ALVSKGVECFLFQLLSAGFFHADPHTGNLIRLENGQLCVIDFGLMAVIEK
EEMDAMVAAIVHLANRDWPRVIEDFVVLKFLPADIDTSKVEPVIGAILDQ
ALEGGGANAINFQSLSEELATVTFDFPFSIPPAFALLLRALSVLEGIALV
GDPEFKLIMESFPFVSRLIMTDRSPALRSALKQILYKDGSFSPKRLRVLL
DSSQGIINEGDAFVDFDTMSSNSKVSRDAIDFLFSDEGFLIREILVDELA
KGIDVYVRDSFNRTAGSFERSVPAPFRGFLRGPALVVPLVPLSLMFGADP
FFALPPVDKSERAFLDNLSEISEWLATDAVSSGMLRPNVILELLPEVLAK
STIIGRQVAGRLSETFLKRLFDDLLRANGEIVNGRRRITLSRK*

spliced messenger RNA

>Gchil1542.t1 ID=Gchil1542.t1|Name=Gchil1542.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2232bp|location=Sequence derived from alignment at tig00004403_pilon:822537..824768+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGTATCGTCGCGCTACCCTTGGTCTCAGACCTCTTAGTTTCAT
CTCGTCGACCTCATTTCTTCAAACAAAGAAGCTCACATCAATTCCCTCAT
CCACAAGCAGCTCATCACGAAGGCTTTCATCACATAATCCAAAATCAAAT
ACCTATCCGAGGGCTACTATAGCTCTCCCGCAGGTTTCTGCCGAAGAGGC
TCTACAGCCGGCAGTCCGCATCGCACAAGTGTCGAACGTTGGCGGCGATG
ACCTTGGTCTTCCTCTCGAATTCGATCAAGATGCCATCGAAAAATACTGG
AACAAACGCAGTACGGCGCTCACGAAGCGTTTGGCAGAGGTGACTGCAGT
TTTCACGCCATGGATTGTTCGAATATCTGCCGATGCCGCGAAGGGCACCC
TGAAACAGAATGGAGCAAAGAGAGCTGCCGAGTTGAGGGACGTGCTCACA
ACCTTAGGACCTACGTTCGTCAAACTGGGACAGGCCCTGTCTGTGCGCCC
TGATATCATTGGTCCGGAAGCCATGAATGAGCTTCGTCTACTTTGCGATG
CTGTACCCTCCTTTTCGAATGAGATTGCCTTTCAAATGATGGAACAAGAG
TTGGGCCGTCCAGTGAATGAAGTCTACTCTGAGATTTCCGACAAACCGAT
AGCTGCTGCTTCGCTTGGACAAGTGTACAAAGCACGACTAAGGAGCAATG
GAAAGGAGGTAGCTATCAAGGTCCAGCGTCCCGATATGTTGCGCAAAGTC
AGCTTGGATCTGTACTGTATGAAGAGAGTGGCTCGTCTCATAGAAGCGGT
CCAAGGACAATTCACTGCGGCTCAAACGGACTACACCAGTCTGTTGTTGG
AATGGTCGAAAGGTACTTACAAGGAACTAGATTACGAAAATGAAGCCGAA
AACTCACGAAGGTTTGCACGTCTGGTACAGGCTCGATTGCCTGATGTCTA
TGTGCCGAAAGTGTACGATGAGTATACCAGTCGCAAGGTGCTCACTATGG
AGTGGATAAACGGCAAAAAGCTGTCGGACTGCAATCCAGAGCAAATTAAC
GCTTTGGTGTCCAAGGGAGTGGAGTGCTTTTTGTTTCAACTTTTGTCCGC
AGGCTTCTTCCATGCAGACCCACACACGGGAAATCTGATTCGCTTGGAGA
ACGGGCAACTGTGTGTTATTGACTTTGGTCTCATGGCTGTCATTGAGAAG
GAAGAAATGGACGCGATGGTGGCAGCTATCGTTCACTTGGCGAACAGAGA
CTGGCCAAGGGTTATCGAAGATTTTGTGGTTCTGAAGTTTCTGCCCGCAG
ATATTGATACGTCCAAAGTAGAACCTGTCATCGGGGCTATATTGGATCAA
GCACTTGAAGGCGGTGGAGCGAATGCCATCAATTTTCAGTCTCTCTCCGA
GGAGTTGGCTACAGTGACTTTTGACTTTCCCTTCTCAATTCCGCCAGCAT
TTGCTCTTCTATTACGTGCTCTTTCGGTTTTAGAAGGTATCGCGTTGGTC
GGCGATCCCGAATTTAAGCTGATCATGGAATCTTTCCCGTTTGTATCTCG
CCTGATTATGACGGATCGTAGTCCGGCTTTGCGCTCAGCTTTGAAGCAGA
TTTTGTACAAGGACGGCAGTTTCAGTCCGAAGCGACTTCGAGTTCTTCTT
GATTCGTCTCAGGGCATCATCAACGAAGGTGATGCCTTCGTTGACTTTGA
CACAATGAGCAGCAATTCCAAAGTATCAAGAGATGCAATTGACTTTCTTT
TTAGTGATGAAGGATTTCTAATCCGTGAAATTCTTGTGGACGAACTGGCC
AAAGGGATTGATGTGTATGTACGAGACTCATTCAATCGAACTGCAGGCTC
TTTCGAACGATCTGTGCCCGCTCCATTCCGCGGGTTCCTTCGCGGACCGG
CCCTGGTCGTTCCGCTGGTGCCCTTATCTCTCATGTTTGGAGCGGATCCC
TTTTTCGCACTACCTCCCGTCGACAAATCAGAGAGAGCCTTTCTTGATAA
CCTTAGCGAAATCTCTGAATGGTTGGCTACTGATGCAGTTTCCTCTGGAA
TGTTGCGACCCAACGTGATCCTTGAATTGCTTCCAGAAGTTCTCGCCAAG
TCAACGATAATCGGGAGACAGGTTGCAGGTCGACTGAGCGAAACTTTTTT
GAAGAGACTGTTTGACGATCTTCTTCGTGCAAATGGCGAGATTGTTAACG
GGCGTAGACGGATCACTCTTTCACGAAAGTGA

protein sequence of Gchil1542.t1

>Gchil1542.t1 ID=Gchil1542.t1|Name=Gchil1542.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=744bp
MAAYRRATLGLRPLSFISSTSFLQTKKLTSIPSSTSSSSRRLSSHNPKSN
TYPRATIALPQVSAEEALQPAVRIAQVSNVGGDDLGLPLEFDQDAIEKYW
NKRSTALTKRLAEVTAVFTPWIVRISADAAKGTLKQNGAKRAAELRDVLT
TLGPTFVKLGQALSVRPDIIGPEAMNELRLLCDAVPSFSNEIAFQMMEQE
LGRPVNEVYSEISDKPIAAASLGQVYKARLRSNGKEVAIKVQRPDMLRKV
SLDLYCMKRVARLIEAVQGQFTAAQTDYTSLLLEWSKGTYKELDYENEAE
NSRRFARLVQARLPDVYVPKVYDEYTSRKVLTMEWINGKKLSDCNPEQIN
ALVSKGVECFLFQLLSAGFFHADPHTGNLIRLENGQLCVIDFGLMAVIEK
EEMDAMVAAIVHLANRDWPRVIEDFVVLKFLPADIDTSKVEPVIGAILDQ
ALEGGGANAINFQSLSEELATVTFDFPFSIPPAFALLLRALSVLEGIALV
GDPEFKLIMESFPFVSRLIMTDRSPALRSALKQILYKDGSFSPKRLRVLL
DSSQGIINEGDAFVDFDTMSSNSKVSRDAIDFLFSDEGFLIREILVDELA
KGIDVYVRDSFNRTAGSFERSVPAPFRGFLRGPALVVPLVPLSLMFGADP
FFALPPVDKSERAFLDNLSEISEWLATDAVSSGMLRPNVILELLPEVLAK
STIIGRQVAGRLSETFLKRLFDDLLRANGEIVNGRRRITLSRK*

mRNA from alignment at tig00004403_pilon:822537..824768+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1542.t1 ID=Gchil1542.t1|Name=Gchil1542.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2232bp|location=Sequence derived from alignment at tig00004403_pilon:822537..824768+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCGTATCGTCGCGCTACCCTTGGTCTCAGACCTCTTAGTTTCAT
CTCGTCGACCTCATTTCTTCAAACAAAGAAGCTCACATCAATTCCCTCAT
CCACAAGCAGCTCATCACGAAGGCTTTCATCACATAATCCAAAATCAAAT
ACCTATCCGAGGGCTACTATAGCTCTCCCGCAGGTTTCTGCCGAAGAGGC
TCTACAGCCGGCAGTCCGCATCGCACAAGTGTCGAACGTTGGCGGCGATG
ACCTTGGTCTTCCTCTCGAATTCGATCAAGATGCCATCGAAAAATACTGG
AACAAACGCAGTACGGCGCTCACGAAGCGTTTGGCAGAGGTGACTGCAGT
TTTCACGCCATGGATTGTTCGAATATCTGCCGATGCCGCGAAGGGCACCC
TGAAACAGAATGGAGCAAAGAGAGCTGCCGAGTTGAGGGACGTGCTCACA
ACCTTAGGACCTACGTTCGTCAAACTGGGACAGGCCCTGTCTGTGCGCCC
TGATATCATTGGTCCGGAAGCCATGAATGAGCTTCGTCTACTTTGCGATG
CTGTACCCTCCTTTTCGAATGAGATTGCCTTTCAAATGATGGAACAAGAG
TTGGGCCGTCCAGTGAATGAAGTCTACTCTGAGATTTCCGACAAACCGAT
AGCTGCTGCTTCGCTTGGACAAGTGTACAAAGCACGACTAAGGAGCAATG
GAAAGGAGGTAGCTATCAAGGTCCAGCGTCCCGATATGTTGCGCAAAGTC
AGCTTGGATCTGTACTGTATGAAGAGAGTGGCTCGTCTCATAGAAGCGGT
CCAAGGACAATTCACTGCGGCTCAAACGGACTACACCAGTCTGTTGTTGG
AATGGTCGAAAGGTACTTACAAGGAACTAGATTACGAAAATGAAGCCGAA
AACTCACGAAGGTTTGCACGTCTGGTACAGGCTCGATTGCCTGATGTCTA
TGTGCCGAAAGTGTACGATGAGTATACCAGTCGCAAGGTGCTCACTATGG
AGTGGATAAACGGCAAAAAGCTGTCGGACTGCAATCCAGAGCAAATTAAC
GCTTTGGTGTCCAAGGGAGTGGAGTGCTTTTTGTTTCAACTTTTGTCCGC
AGGCTTCTTCCATGCAGACCCACACACGGGAAATCTGATTCGCTTGGAGA
ACGGGCAACTGTGTGTTATTGACTTTGGTCTCATGGCTGTCATTGAGAAG
GAAGAAATGGACGCGATGGTGGCAGCTATCGTTCACTTGGCGAACAGAGA
CTGGCCAAGGGTTATCGAAGATTTTGTGGTTCTGAAGTTTCTGCCCGCAG
ATATTGATACGTCCAAAGTAGAACCTGTCATCGGGGCTATATTGGATCAA
GCACTTGAAGGCGGTGGAGCGAATGCCATCAATTTTCAGTCTCTCTCCGA
GGAGTTGGCTACAGTGACTTTTGACTTTCCCTTCTCAATTCCGCCAGCAT
TTGCTCTTCTATTACGTGCTCTTTCGGTTTTAGAAGGTATCGCGTTGGTC
GGCGATCCCGAATTTAAGCTGATCATGGAATCTTTCCCGTTTGTATCTCG
CCTGATTATGACGGATCGTAGTCCGGCTTTGCGCTCAGCTTTGAAGCAGA
TTTTGTACAAGGACGGCAGTTTCAGTCCGAAGCGACTTCGAGTTCTTCTT
GATTCGTCTCAGGGCATCATCAACGAAGGTGATGCCTTCGTTGACTTTGA
CACAATGAGCAGCAATTCCAAAGTATCAAGAGATGCAATTGACTTTCTTT
TTAGTGATGAAGGATTTCTAATCCGTGAAATTCTTGTGGACGAACTGGCC
AAAGGGATTGATGTGTATGTACGAGACTCATTCAATCGAACTGCAGGCTC
TTTCGAACGATCTGTGCCCGCTCCATTCCGCGGGTTCCTTCGCGGACCGG
CCCTGGTCGTTCCGCTGGTGCCCTTATCTCTCATGTTTGGAGCGGATCCC
TTTTTCGCACTACCTCCCGTCGACAAATCAGAGAGAGCCTTTCTTGATAA
CCTTAGCGAAATCTCTGAATGGTTGGCTACTGATGCAGTTTCCTCTGGAA
TGTTGCGACCCAACGTGATCCTTGAATTGCTTCCAGAAGTTCTCGCCAAG
TCAACGATAATCGGGAGACAGGTTGCAGGTCGACTGAGCGAAACTTTTTT
GAAGAGACTGTTTGACGATCTTCTTCGTGCAAATGGCGAGATTGTTAACG
GGCGTAGACGGATCACTCTTTCACGAAAGTGA

Coding sequence (CDS) from alignment at tig00004403_pilon:822537..824768+

>Gchil1542.t1 ID=Gchil1542.t1|Name=Gchil1542.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2232bp|location=Sequence derived from alignment at tig00004403_pilon:822537..824768+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCGTATCGTCGCGCTACCCTTGGTCTCAGACCTCTTAGTTTCAT
CTCGTCGACCTCATTTCTTCAAACAAAGAAGCTCACATCAATTCCCTCAT
CCACAAGCAGCTCATCACGAAGGCTTTCATCACATAATCCAAAATCAAAT
ACCTATCCGAGGGCTACTATAGCTCTCCCGCAGGTTTCTGCCGAAGAGGC
TCTACAGCCGGCAGTCCGCATCGCACAAGTGTCGAACGTTGGCGGCGATG
ACCTTGGTCTTCCTCTCGAATTCGATCAAGATGCCATCGAAAAATACTGG
AACAAACGCAGTACGGCGCTCACGAAGCGTTTGGCAGAGGTGACTGCAGT
TTTCACGCCATGGATTGTTCGAATATCTGCCGATGCCGCGAAGGGCACCC
TGAAACAGAATGGAGCAAAGAGAGCTGCCGAGTTGAGGGACGTGCTCACA
ACCTTAGGACCTACGTTCGTCAAACTGGGACAGGCCCTGTCTGTGCGCCC
TGATATCATTGGTCCGGAAGCCATGAATGAGCTTCGTCTACTTTGCGATG
CTGTACCCTCCTTTTCGAATGAGATTGCCTTTCAAATGATGGAACAAGAG
TTGGGCCGTCCAGTGAATGAAGTCTACTCTGAGATTTCCGACAAACCGAT
AGCTGCTGCTTCGCTTGGACAAGTGTACAAAGCACGACTAAGGAGCAATG
GAAAGGAGGTAGCTATCAAGGTCCAGCGTCCCGATATGTTGCGCAAAGTC
AGCTTGGATCTGTACTGTATGAAGAGAGTGGCTCGTCTCATAGAAGCGGT
CCAAGGACAATTCACTGCGGCTCAAACGGACTACACCAGTCTGTTGTTGG
AATGGTCGAAAGGTACTTACAAGGAACTAGATTACGAAAATGAAGCCGAA
AACTCACGAAGGTTTGCACGTCTGGTACAGGCTCGATTGCCTGATGTCTA
TGTGCCGAAAGTGTACGATGAGTATACCAGTCGCAAGGTGCTCACTATGG
AGTGGATAAACGGCAAAAAGCTGTCGGACTGCAATCCAGAGCAAATTAAC
GCTTTGGTGTCCAAGGGAGTGGAGTGCTTTTTGTTTCAACTTTTGTCCGC
AGGCTTCTTCCATGCAGACCCACACACGGGAAATCTGATTCGCTTGGAGA
ACGGGCAACTGTGTGTTATTGACTTTGGTCTCATGGCTGTCATTGAGAAG
GAAGAAATGGACGCGATGGTGGCAGCTATCGTTCACTTGGCGAACAGAGA
CTGGCCAAGGGTTATCGAAGATTTTGTGGTTCTGAAGTTTCTGCCCGCAG
ATATTGATACGTCCAAAGTAGAACCTGTCATCGGGGCTATATTGGATCAA
GCACTTGAAGGCGGTGGAGCGAATGCCATCAATTTTCAGTCTCTCTCCGA
GGAGTTGGCTACAGTGACTTTTGACTTTCCCTTCTCAATTCCGCCAGCAT
TTGCTCTTCTATTACGTGCTCTTTCGGTTTTAGAAGGTATCGCGTTGGTC
GGCGATCCCGAATTTAAGCTGATCATGGAATCTTTCCCGTTTGTATCTCG
CCTGATTATGACGGATCGTAGTCCGGCTTTGCGCTCAGCTTTGAAGCAGA
TTTTGTACAAGGACGGCAGTTTCAGTCCGAAGCGACTTCGAGTTCTTCTT
GATTCGTCTCAGGGCATCATCAACGAAGGTGATGCCTTCGTTGACTTTGA
CACAATGAGCAGCAATTCCAAAGTATCAAGAGATGCAATTGACTTTCTTT
TTAGTGATGAAGGATTTCTAATCCGTGAAATTCTTGTGGACGAACTGGCC
AAAGGGATTGATGTGTATGTACGAGACTCATTCAATCGAACTGCAGGCTC
TTTCGAACGATCTGTGCCCGCTCCATTCCGCGGGTTCCTTCGCGGACCGG
CCCTGGTCGTTCCGCTGGTGCCCTTATCTCTCATGTTTGGAGCGGATCCC
TTTTTCGCACTACCTCCCGTCGACAAATCAGAGAGAGCCTTTCTTGATAA
CCTTAGCGAAATCTCTGAATGGTTGGCTACTGATGCAGTTTCCTCTGGAA
TGTTGCGACCCAACGTGATCCTTGAATTGCTTCCAGAAGTTCTCGCCAAG
TCAACGATAATCGGGAGACAGGTTGCAGGTCGACTGAGCGAAACTTTTTT
GAAGAGACTGTTTGACGATCTTCTTCGTGCAAATGGCGAGATTGTTAACG
GGCGTAGACGGATCACTCTTTCACGAAAGTGA