Gchil1534.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1534.t1
Unique Name	Gchil1534.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	477

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:802642..804072 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38727.Pavir.J11495.1.p
PFAMs	CBF
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K05387,ko:K14771
KEGG TC	1.A.10.1.10,1.A.10.1.18,1.A.10.1.7
Evalue	7.51e-46
EggNOG OGs	KOG2154@1\|root,KOG2154@2759\|Eukaryota,37ICE@33090\|Viridiplantae,3GEQG@35493\|Streptophyta,3KTRA@4447\|Liliopsida,3IB77@38820\|Poales
Description	CBF/Mak21 family
COG category	J
BRITE	ko00000,ko03009,ko04040

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1534	Gchil1534	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 802642..804072 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1534.t1.start1	Gchil1534.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 802642..802644 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1534.t1.CDS1	Gchil1534.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 802642..804072 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1534.t1.exon1	Gchil1534.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 802642..804072 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1534.t1.stop1	Gchil1534.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 804070..804072 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1534.t1	Gchil1534.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 802642..804072 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:802642..804072+
coding sequence from alignment at tig00004403_pilon:802642..804072+

mRNA sequence

>Gchil1534.t1 ID=Gchil1534.t1|Name=Gchil1534.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp
MVSIIEAAKTPPVEEKARSLEQIRTLENLFRKAPTDNINTIPKLISAIYP
VNNLTQKAIHAARRCLVLAQASDFSSVERTEWLSLQTDHYATALVSVIKA
NQDNEAMNVAVAGAALTQHHVWRKVCQAVIVGENKDLHELLFTNFVPRFA
DLRLGALQLVEKHVGTIETRLRALSACRNGDEDVAKTQVSKKELKSAFVK
AWLAVLRVEMNLEIQQTLLRRIPNELIPVMPQPLVLSDFIISSFAAKDIS
TSIAALEGLFILISKHRLEYPLFYQEVYSLLRVDVFRYVEDPTRFMELVA
TLLLKGTMIPGNMVAAFVKRLVRRALNWPSYHAVWCLRLALDVLQKHPST
CFLVHRPVNLFDTVPNQNGEDPFDDTEHDPQASRANESSLWEVEVLKRHI
NPAVSRLAMAFERDLRNRRASLPGELSDYTGLQFSDIFQAEVHRKAKVSP
LAYSTPGTDPSVTRLKKRLKTCVSWS*

spliced messenger RNA

>Gchil1534.t1 ID=Gchil1534.t1|Name=Gchil1534.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00004403_pilon:802642..804072+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAGTATTATCGAGGCTGCTAAGACCCCTCCAGTGGAGGAAAAGGC
TCGCTCTTTGGAGCAGATTCGAACTCTTGAAAATCTATTTCGAAAGGCTC
CAACTGATAATATAAACACCATTCCAAAACTAATTTCCGCTATATATCCT
GTCAATAACCTGACTCAGAAGGCCATCCACGCAGCCCGAAGATGTTTAGT
ACTAGCGCAAGCCTCCGACTTTTCTTCCGTGGAGCGAACTGAATGGCTGA
GTCTTCAAACAGATCATTACGCAACTGCCCTTGTATCTGTCATAAAAGCA
AACCAAGATAACGAAGCAATGAACGTTGCAGTCGCAGGTGCTGCTCTCAC
GCAACATCATGTTTGGAGAAAAGTTTGTCAAGCTGTGATTGTCGGGGAAA
ACAAAGATCTTCACGAGCTTTTGTTTACCAATTTTGTTCCTCGCTTTGCA
GATCTTCGTCTTGGAGCTCTACAGCTAGTTGAGAAACATGTCGGGACCAT
CGAGACTAGACTGCGAGCGCTTTCTGCTTGTCGCAATGGTGACGAAGATG
TTGCGAAAACTCAAGTTTCGAAAAAGGAACTAAAATCAGCTTTCGTGAAA
GCGTGGCTCGCGGTTCTACGAGTTGAAATGAATCTAGAGATCCAACAGAC
TTTGTTGAGACGAATTCCAAACGAGCTCATTCCGGTCATGCCTCAGCCTC
TAGTACTCAGTGATTTCATTATCTCCAGTTTCGCTGCAAAAGATATATCG
ACTTCAATCGCGGCTCTAGAAGGTCTGTTCATTCTCATATCAAAGCATCG
CCTAGAATATCCACTTTTTTACCAAGAGGTATATTCCTTACTCAGAGTCG
ATGTCTTCCGTTACGTTGAAGATCCAACGAGATTCATGGAACTGGTGGCG
ACCTTACTTTTGAAAGGAACAATGATCCCGGGTAACATGGTAGCTGCCTT
TGTCAAAAGATTGGTTCGACGTGCTCTCAACTGGCCCTCTTACCACGCTG
TATGGTGTCTTCGACTCGCTCTTGACGTACTTCAAAAACATCCCAGTACG
TGTTTCTTGGTGCACAGACCCGTAAATCTTTTTGACACAGTTCCGAATCA
AAATGGGGAGGACCCCTTTGATGACACCGAACATGATCCTCAAGCAAGTC
GAGCGAATGAAAGCTCCTTGTGGGAAGTGGAGGTGTTGAAAAGACATATA
AACCCGGCAGTCTCAAGACTGGCAATGGCGTTTGAAAGAGATCTGAGAAA
TAGACGAGCGTCGCTACCAGGTGAGTTGTCAGACTACACAGGATTACAAT
TCAGCGATATCTTCCAGGCCGAAGTTCATCGGAAGGCGAAAGTCAGTCCC
CTGGCATACAGCACCCCTGGAACTGATCCATCTGTAACAAGATTGAAAAA
ACGACTCAAAACTTGTGTTTCTTGGTCATAG

protein sequence of Gchil1534.t1

>Gchil1534.t1 ID=Gchil1534.t1|Name=Gchil1534.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=477bp
MVSIIEAAKTPPVEEKARSLEQIRTLENLFRKAPTDNINTIPKLISAIYP
VNNLTQKAIHAARRCLVLAQASDFSSVERTEWLSLQTDHYATALVSVIKA
NQDNEAMNVAVAGAALTQHHVWRKVCQAVIVGENKDLHELLFTNFVPRFA
DLRLGALQLVEKHVGTIETRLRALSACRNGDEDVAKTQVSKKELKSAFVK
AWLAVLRVEMNLEIQQTLLRRIPNELIPVMPQPLVLSDFIISSFAAKDIS
TSIAALEGLFILISKHRLEYPLFYQEVYSLLRVDVFRYVEDPTRFMELVA
TLLLKGTMIPGNMVAAFVKRLVRRALNWPSYHAVWCLRLALDVLQKHPST
CFLVHRPVNLFDTVPNQNGEDPFDDTEHDPQASRANESSLWEVEVLKRHI
NPAVSRLAMAFERDLRNRRASLPGELSDYTGLQFSDIFQAEVHRKAKVSP
LAYSTPGTDPSVTRLKKRLKTCVSWS*

mRNA from alignment at tig00004403_pilon:802642..804072+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1534.t1 ID=Gchil1534.t1|Name=Gchil1534.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00004403_pilon:802642..804072+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCAGTATTATCGAGGCTGCTAAGACCCCTCCAGTGGAGGAAAAGGC
TCGCTCTTTGGAGCAGATTCGAACTCTTGAAAATCTATTTCGAAAGGCTC
CAACTGATAATATAAACACCATTCCAAAACTAATTTCCGCTATATATCCT
GTCAATAACCTGACTCAGAAGGCCATCCACGCAGCCCGAAGATGTTTAGT
ACTAGCGCAAGCCTCCGACTTTTCTTCCGTGGAGCGAACTGAATGGCTGA
GTCTTCAAACAGATCATTACGCAACTGCCCTTGTATCTGTCATAAAAGCA
AACCAAGATAACGAAGCAATGAACGTTGCAGTCGCAGGTGCTGCTCTCAC
GCAACATCATGTTTGGAGAAAAGTTTGTCAAGCTGTGATTGTCGGGGAAA
ACAAAGATCTTCACGAGCTTTTGTTTACCAATTTTGTTCCTCGCTTTGCA
GATCTTCGTCTTGGAGCTCTACAGCTAGTTGAGAAACATGTCGGGACCAT
CGAGACTAGACTGCGAGCGCTTTCTGCTTGTCGCAATGGTGACGAAGATG
TTGCGAAAACTCAAGTTTCGAAAAAGGAACTAAAATCAGCTTTCGTGAAA
GCGTGGCTCGCGGTTCTACGAGTTGAAATGAATCTAGAGATCCAACAGAC
TTTGTTGAGACGAATTCCAAACGAGCTCATTCCGGTCATGCCTCAGCCTC
TAGTACTCAGTGATTTCATTATCTCCAGTTTCGCTGCAAAAGATATATCG
ACTTCAATCGCGGCTCTAGAAGGTCTGTTCATTCTCATATCAAAGCATCG
CCTAGAATATCCACTTTTTTACCAAGAGGTATATTCCTTACTCAGAGTCG
ATGTCTTCCGTTACGTTGAAGATCCAACGAGATTCATGGAACTGGTGGCG
ACCTTACTTTTGAAAGGAACAATGATCCCGGGTAACATGGTAGCTGCCTT
TGTCAAAAGATTGGTTCGACGTGCTCTCAACTGGCCCTCTTACCACGCTG
TATGGTGTCTTCGACTCGCTCTTGACGTACTTCAAAAACATCCCAGTACG
TGTTTCTTGGTGCACAGACCCGTAAATCTTTTTGACACAGTTCCGAATCA
AAATGGGGAGGACCCCTTTGATGACACCGAACATGATCCTCAAGCAAGTC
GAGCGAATGAAAGCTCCTTGTGGGAAGTGGAGGTGTTGAAAAGACATATA
AACCCGGCAGTCTCAAGACTGGCAATGGCGTTTGAAAGAGATCTGAGAAA
TAGACGAGCGTCGCTACCAGGTGAGTTGTCAGACTACACAGGATTACAAT
TCAGCGATATCTTCCAGGCCGAAGTTCATCGGAAGGCGAAAGTCAGTCCC
CTGGCATACAGCACCCCTGGAACTGATCCATCTGTAACAAGATTGAAAAA
ACGACTCAAAACTTGTGTTTCTTGGTCATAG

Coding sequence (CDS) from alignment at tig00004403_pilon:802642..804072+

>Gchil1534.t1 ID=Gchil1534.t1|Name=Gchil1534.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1431bp|location=Sequence derived from alignment at tig00004403_pilon:802642..804072+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCAGTATTATCGAGGCTGCTAAGACCCCTCCAGTGGAGGAAAAGGC
TCGCTCTTTGGAGCAGATTCGAACTCTTGAAAATCTATTTCGAAAGGCTC
CAACTGATAATATAAACACCATTCCAAAACTAATTTCCGCTATATATCCT
GTCAATAACCTGACTCAGAAGGCCATCCACGCAGCCCGAAGATGTTTAGT
ACTAGCGCAAGCCTCCGACTTTTCTTCCGTGGAGCGAACTGAATGGCTGA
GTCTTCAAACAGATCATTACGCAACTGCCCTTGTATCTGTCATAAAAGCA
AACCAAGATAACGAAGCAATGAACGTTGCAGTCGCAGGTGCTGCTCTCAC
GCAACATCATGTTTGGAGAAAAGTTTGTCAAGCTGTGATTGTCGGGGAAA
ACAAAGATCTTCACGAGCTTTTGTTTACCAATTTTGTTCCTCGCTTTGCA
GATCTTCGTCTTGGAGCTCTACAGCTAGTTGAGAAACATGTCGGGACCAT
CGAGACTAGACTGCGAGCGCTTTCTGCTTGTCGCAATGGTGACGAAGATG
TTGCGAAAACTCAAGTTTCGAAAAAGGAACTAAAATCAGCTTTCGTGAAA
GCGTGGCTCGCGGTTCTACGAGTTGAAATGAATCTAGAGATCCAACAGAC
TTTGTTGAGACGAATTCCAAACGAGCTCATTCCGGTCATGCCTCAGCCTC
TAGTACTCAGTGATTTCATTATCTCCAGTTTCGCTGCAAAAGATATATCG
ACTTCAATCGCGGCTCTAGAAGGTCTGTTCATTCTCATATCAAAGCATCG
CCTAGAATATCCACTTTTTTACCAAGAGGTATATTCCTTACTCAGAGTCG
ATGTCTTCCGTTACGTTGAAGATCCAACGAGATTCATGGAACTGGTGGCG
ACCTTACTTTTGAAAGGAACAATGATCCCGGGTAACATGGTAGCTGCCTT
TGTCAAAAGATTGGTTCGACGTGCTCTCAACTGGCCCTCTTACCACGCTG
TATGGTGTCTTCGACTCGCTCTTGACGTACTTCAAAAACATCCCAGTACG
TGTTTCTTGGTGCACAGACCCGTAAATCTTTTTGACACAGTTCCGAATCA
AAATGGGGAGGACCCCTTTGATGACACCGAACATGATCCTCAAGCAAGTC
GAGCGAATGAAAGCTCCTTGTGGGAAGTGGAGGTGTTGAAAAGACATATA
AACCCGGCAGTCTCAAGACTGGCAATGGCGTTTGAAAGAGATCTGAGAAA
TAGACGAGCGTCGCTACCAGGTGAGTTGTCAGACTACACAGGATTACAAT
TCAGCGATATCTTCCAGGCCGAAGTTCATCGGAAGGCGAAAGTCAGTCCC
CTGGCATACAGCACCCCTGGAACTGATCCATCTGTAACAAGATTGAAAAA
ACGACTCAAAACTTGTGTTTCTTGGTCATAG