Gchil1530.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1530.t1
Unique NameGchil1530.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length363
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:795200..796647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707627.1
Preferred nameIDP1
PFAMsIso_dh
Max annot lvl2759|Eukaryota
KEGG rclassRC00001,RC00084,RC00114,RC00626,RC02801
KEGG koko:K00031
KEGG ReactionR00267,R00268,R01899
KEGG Pathwayko00020,ko00480,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146
KEGG ModuleM00009,M00010,M00173,M00740
GOsGO:0000287,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004448,GO:0004450,GO:0005102,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005782,GO:0005829,GO:0005886,GO:0005911,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006102,GO:0006103,GO:0006139,GO:0006520,GO:0006536,GO:0006537,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009060,GO:0009062,GO:0009064,GO:0009084,GO:0009117,GO:0009295,GO:0009506,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009651,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0012505,GO:0015031,GO:0015833,GO:0015980,GO:0016020,GO:0016042,GO:0016043,GO:0016053,GO:0016054,GO:0016192,GO:0016491,GO:0016614,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019395,GO:0019637,GO:0019752,GO:0030054,GO:0030141,GO:0030258,GO:0031410,GO:0031907,GO:0031974,GO:0031976,GO:0031982,GO:0031983,GO:0031984,GO:0032787,GO:0032940,GO:0033036,GO:0033365,GO:0034440,GO:0034613,GO:0034641,GO:0034774,GO:0036230,GO:0042119,GO:0042221,GO:0042579,GO:0042645,GO:0042742,GO:0042802,GO:0042803,GO:0042886,GO:0043167,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043436,GO:0043574,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044433,GO:0044434,GO:0044435,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0045333,GO:0046394,GO:0046395,GO:0046483,GO:0046496,GO:0046686,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0046983,GO:0048046,GO:0050896,GO:0051179,GO:0051186,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051990,GO:0055044,GO:0055086,GO:0055114,GO:0060205,GO:0070013,GO:0070727,GO:0070820,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072329,GO:0072350,GO:0072524,GO:0072594,GO:0072662,GO:0072663,GO:0097708,GO:0098542,GO:0099503,GO:0101002,GO:1901360,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901607,GO:1904724,GO:1904813
Evalue2.69e-127
EggNOG OGsCOG0538@1|root,KOG1526@2759|Eukaryota
EC1.1.1.42
Descriptionisocitrate dehydrogenase (NADP ) activity
COG categoryC
BiGG ReactioniMM904.YLR174W,iND750.YLR174W
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1530Gchil1530Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 795200..796647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1530.t1Gchil1530.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 795200..796647 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1530.t1.start1Gchil1530.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 795200..795202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1530.t1.CDS1Gchil1530.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 795200..796118 +
Gchil1530.t1.CDS2Gchil1530.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 796223..796291 +
Gchil1530.t1.CDS3Gchil1530.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 796547..796647 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1530.t1.exon1Gchil1530.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 795200..796118 +
Gchil1530.t1.exon2Gchil1530.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 796223..796291 +
Gchil1530.t1.exon3Gchil1530.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 796547..796647 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1530.t1.intron1Gchil1530.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 796119..796222 +
Gchil1530.t1.intron2Gchil1530.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 796292..796546 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1530.t1.stop1Gchil1530.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 796645..796647 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1530.t1 ID=Gchil1530.t1|Name=Gchil1530.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=363bp
MRPVALRGAASAVRSLSVTAGSGGGAPSRSFAAAAPAAKIKVDNPVVSLD
GDEMTRMIWTTIKDRLISPYLDIPIIEYDLGIINRDKTDDRVTIEAAHAI
LEHNVGIKCAGITPDEARVDEFGLKRMYKSPNGTIRAILNGTVFREPIIA
QNIPRLVTAWNKPIIIARHAYADQYKSVDMRIPPGGGTLKMVFEHENGHV
DEHVVHQFQDAGVGLCMFNTDDSIYGFAKATFSYARMRALPVILASKNTI
LKQYDGRFLQIFAEVHADYPDVPYEHRLIDDFVAYMIKSDGGYVAALKNY
DGDVISDISAQGFGSLGLMTSTLVCPHDNGTERQFWVTTNEYIDAVVDRL
TNDSAVDHAEAS*
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spliced messenger RNA

>Gchil1530.t1 ID=Gchil1530.t1|Name=Gchil1530.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00004403_pilon:795200..796647+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCCTGTCGCGCTCCGCGGTGCAGCTTCGGCCGTCAGGTCTCTGTC
CGTCACTGCTGGCTCCGGAGGTGGGGCCCCTTCTCGCTCCTTCGCTGCTG
CTGCCCCGGCCGCAAAGATCAAGGTGGACAACCCGGTCGTTTCGCTGGAT
GGCGACGAGATGACCCGTATGATATGGACCACAATCAAGGATCGCCTTAT
CTCACCGTATCTAGACATCCCTATCATCGAGTACGATCTCGGTATTATCA
ATAGAGATAAGACAGATGATCGAGTGACTATTGAGGCTGCCCACGCCATT
CTGGAACATAACGTCGGCATCAAGTGCGCTGGCATCACCCCAGATGAGGC
TCGCGTCGATGAATTCGGTCTCAAGCGCATGTACAAATCACCGAACGGAA
CCATTCGAGCCATTCTGAACGGCACCGTTTTCAGAGAGCCCATCATTGCT
CAAAACATCCCCCGACTTGTCACGGCTTGGAACAAACCCATTATCATCGC
TCGCCATGCGTACGCCGACCAGTACAAATCTGTTGACATGCGCATCCCGC
CGGGAGGCGGCACGCTCAAGATGGTATTCGAGCATGAAAATGGTCACGTT
GATGAACACGTGGTGCACCAATTTCAAGATGCGGGAGTCGGTTTGTGTAT
GTTTAACACTGACGACAGTATTTATGGGTTTGCAAAGGCTACTTTCTCGT
ATGCTCGCATGAGAGCTCTACCTGTCATTCTTGCCAGTAAGAATACTATT
CTCAAGCAATACGATGGTCGCTTTTTACAGATCTTTGCTGAAGTTCATGC
TGATTATCCAGACGTTCCTTATGAGCACCGCCTCATTGATGACTTTGTTG
CGTATATGATCAAGTCTGATGGGGGCTATGTTGCCGCTCTCAAGAACTAT
GACGGTGATGTTATTTCCGATATCAGCGCACAAGGATTTGGAAGTTTGGG
TTTGATGACATCCACTCTGGTGTGTCCGcatgacaacggcactgaacgtc
agttttgggttaccacAAATGAGTACATCGATGCTGTTGTCGACCGCCTC
ACAAACGATTCTGCCGTCGATCATGCAGAGGCCTCGTGA
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protein sequence of Gchil1530.t1

>Gchil1530.t1 ID=Gchil1530.t1|Name=Gchil1530.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=363bp
MRPVALRGAASAVRSLSVTAGSGGGAPSRSFAAAAPAAKIKVDNPVVSLD
GDEMTRMIWTTIKDRLISPYLDIPIIEYDLGIINRDKTDDRVTIEAAHAI
LEHNVGIKCAGITPDEARVDEFGLKRMYKSPNGTIRAILNGTVFREPIIA
QNIPRLVTAWNKPIIIARHAYADQYKSVDMRIPPGGGTLKMVFEHENGHV
DEHVVHQFQDAGVGLCMFNTDDSIYGFAKATFSYARMRALPVILASKNTI
LKQYDGRFLQIFAEVHADYPDVPYEHRLIDDFVAYMIKSDGGYVAALKNY
DGDVISDISAQGFGSLGLMTSTLVCPHDNGTERQFWVTTNEYIDAVVDRL
TNDSAVDHAEAS*
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mRNA from alignment at tig00004403_pilon:795200..796647+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1530.t1 ID=Gchil1530.t1|Name=Gchil1530.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1448bp|location=Sequence derived from alignment at tig00004403_pilon:795200..796647+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGGCCTGTCGCGCTCCGCGGTGCAGCTTCGGCCGTCAGGTCTCTGTC
CGTCACTGCTGGCTCCGGAGGTGGGGCCCCTTCTCGCTCCTTCGCTGCTG
CTGCCCCGGCCGCAAAGATCAAGGTGGACAACCCGGTCGTTTCGCTGGAT
GGCGACGAGATGACCCGTATGATATGGACCACAATCAAGGATCGCCTTAT
CTCACCGTATCTAGACATCCCTATCATCGAGTACGATCTCGGTATTATCA
ATAGAGATAAGACAGATGATCGAGTGACTATTGAGGCTGCCCACGCCATT
CTGGAACATAACGTCGGCATCAAGTGCGCTGGCATCACCCCAGATGAGGC
TCGCGTCGATGAATTCGGTCTCAAGCGCATGTACAAATCACCGAACGGAA
CCATTCGAGCCATTCTGAACGGCACCGTTTTCAGAGAGCCCATCATTGCT
CAAAACATCCCCCGACTTGTCACGGCTTGGAACAAACCCATTATCATCGC
TCGCCATGCGTACGCCGACCAGTACAAATCTGTTGACATGCGCATCCCGC
CGGGAGGCGGCACGCTCAAGATGGTATTCGAGCATGAAAATGGTCACGTT
GATGAACACGTGGTGCACCAATTTCAAGATGCGGGAGTCGGTTTGTGTAT
GTTTAACACTGACGACAGTATTTATGGGTTTGCAAAGGCTACTTTCTCGT
ATGCTCGCATGAGAGCTCTACCTGTCATTCTTGCCAGTAAGAATACTATT
CTCAAGCAATACGATGGTCGCTTTTTACAGATCTTTGCTGAAGTTCATGC
TGATTATCCAGACGTTCCTTATGAGCACCGCCTCATTGATGACTTTGTTG
CGTATATGATCAAGTCTGATGGGGGCTATGTTGCCGCTCTCAAGAACTAT
GACGGTGATGTTATTTCCGGTACGTGATTGGCAAGTTATTGCGTACGTTT
TTTTCCTTATTCTGTACGGCTTACTGACCGCTTTGCCCTCCATCGCATTT
TTGCTCCCTGCACTTTGAAACAGATATCAGCGCACAAGGATTTGGAAGTT
TGGGTTTGATGACATCCACTCTGGTGTGTCCGcatgacaacggtaaaacg
attgagacagaagccgcgcacggaaccgtcacccgtcatttccgtcagca
tcaagccggaaaggaaaccagcaccaaccccattgcatccatcttcgcat
ggacgcgtgggttagaacatcgaggaaaacttgaccataatgaagatctg
gttagttttgccacccggcttgaaaaggcttgtattaatactgtggaaag
tggtacgatgactaaagatctttccatctgtattcatggcaacaaaggca
ctgaacgtcagttttgggttaccacAAATGAGTACATCGATGCTGTTGTC
GACCGCCTCACAAACGATTCTGCCGTCGATCATGCAGAGGCCTCGTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:795200..796647+

>Gchil1530.t1 ID=Gchil1530.t1|Name=Gchil1530.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1089bp|location=Sequence derived from alignment at tig00004403_pilon:795200..796647+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGGCCTGTCGCGCTCCGCGGTGCAGCTTCGGCCGTCAGGTCTCTGTC
CGTCACTGCTGGCTCCGGAGGTGGGGCCCCTTCTCGCTCCTTCGCTGCTG
CTGCCCCGGCCGCAAAGATCAAGGTGGACAACCCGGTCGTTTCGCTGGAT
GGCGACGAGATGACCCGTATGATATGGACCACAATCAAGGATCGCCTTAT
CTCACCGTATCTAGACATCCCTATCATCGAGTACGATCTCGGTATTATCA
ATAGAGATAAGACAGATGATCGAGTGACTATTGAGGCTGCCCACGCCATT
CTGGAACATAACGTCGGCATCAAGTGCGCTGGCATCACCCCAGATGAGGC
TCGCGTCGATGAATTCGGTCTCAAGCGCATGTACAAATCACCGAACGGAA
CCATTCGAGCCATTCTGAACGGCACCGTTTTCAGAGAGCCCATCATTGCT
CAAAACATCCCCCGACTTGTCACGGCTTGGAACAAACCCATTATCATCGC
TCGCCATGCGTACGCCGACCAGTACAAATCTGTTGACATGCGCATCCCGC
CGGGAGGCGGCACGCTCAAGATGGTATTCGAGCATGAAAATGGTCACGTT
GATGAACACGTGGTGCACCAATTTCAAGATGCGGGAGTCGGTTTGTGTAT
GTTTAACACTGACGACAGTATTTATGGGTTTGCAAAGGCTACTTTCTCGT
ATGCTCGCATGAGAGCTCTACCTGTCATTCTTGCCAGTAAGAATACTATT
CTCAAGCAATACGATGGTCGCTTTTTACAGATCTTTGCTGAAGTTCATGC
TGATTATCCAGACGTTCCTTATGAGCACCGCCTCATTGATGACTTTGTTG
CGTATATGATCAAGTCTGATGGGGGCTATGTTGCCGCTCTCAAGAACTAT
GACGGTGATGTTATTTCCGATATCAGCGCACAAGGATTTGGAAGTTTGGG
TTTGATGACATCCACTCTGGTGTGTCCGcatgacaacggcactgaacgtc
agttttgggttaccacAAATGAGTACATCGATGCTGTTGTCGACCGCCTC
ACAAACGATTCTGCCGTCGATCATGCAGAGGCCTCGTGA
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