Gchil1527.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1527.t1
Unique NameGchil1527.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:787252..787923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1177928.TH2_02785
PFAMsRubrerythrin
Max annot lvl204441|Rhodospirillales
Evalue2.59e-08
EggNOG OGsCOG1592@1|root,COG1592@2|Bacteria,1R9WG@1224|Proteobacteria,2U5EA@28211|Alphaproteobacteria,2JRP1@204441|Rhodospirillales
DescriptionCOG1592 Rubrerythrin
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1527Gchil1527Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 787252..787923 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1527.t1.start1Gchil1527.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 787252..787254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1527.t1.CDS1Gchil1527.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 787252..787923 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1527.t1.exon1Gchil1527.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 787252..787923 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1527.t1.stop1Gchil1527.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 787921..787923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1527.t1Gchil1527.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 787252..787923 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1527.t1 ID=Gchil1527.t1|Name=Gchil1527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=224bp
MIRVTTPRVYDVHRALVAFRASIASTRFASSSVSSTSTPSSSSSSSSSSS
SGDAQRDEGELGDSPATRHALQAAFERRAAHAMRYEYFAQRAEMEAEVEA
AHMLRSMNRACVQQALGCLELLEQDEDAEFGATLTNVELMADEERDCAEH
DMVEAATTARADQLEMVAEWFDDVAAAAARATDRLDFTARVLDAGAMEEH
VSDDARPHDAAAQPQVQSDTSAK*
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spliced messenger RNA

>Gchil1527.t1 ID=Gchil1527.t1|Name=Gchil1527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00004403_pilon:787252..787923+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCGCGTTACGACGCCGCGTGTGTACGACGTGCATCGCGCGCTTGT
CGCGTTTCGAGCCTCCATCGCCTCTACGCGCTTCGCGTCTTCCTCAGTCT
CTTCCACCTCGACCCCAtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcg
tcgGGCGACGCGCAGCGGGACGAGGGCGAATTGGGCGACAGCCCGGCCAC
GCGCCACGCGCTGCAAGCCGCGTTTGAACGGCGCGCGGCGCATGCCATGC
GGTATGAGTACTTTGCGCAGCGCGCCGAGATGGAGGCCGAGGTGGAGGCG
GCGCATATGTTACGCTCCATGAATCGCGCATGCGTGCAACAGGCGTTGGG
CTGCTTGGAGCTGTTGGAACAAGATGAAGATGCGGAGTTTGGTGCCACGC
TCACCAATGTGGAGCTTATGGCTGACGAGGAACGCGATTGTGCCGAGCAT
GATATGGTGGAGGCGGCCACTACGGCGCGCGCCGATCAACTTGAGATGGT
TGCCGAGTGGTTTGACGACGTGGCGGCGGCGGCTGCGCGCGCTACAGATC
GCCTTGACTTTACGGCGCGCGTGCTGGACGCTGGTGCCATGGAAGAGCAC
GTGTCGGACGATGCGCGCCCGCATGACGCCGCCGCCCAACCCCAAGTACA
AAGTGACACCTCCGCCAAGTAA
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protein sequence of Gchil1527.t1

>Gchil1527.t1 ID=Gchil1527.t1|Name=Gchil1527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=224bp
MIRVTTPRVYDVHRALVAFRASIASTRFASSSVSSTSTPSSSSSSSSSSS
SGDAQRDEGELGDSPATRHALQAAFERRAAHAMRYEYFAQRAEMEAEVEA
AHMLRSMNRACVQQALGCLELLEQDEDAEFGATLTNVELMADEERDCAEH
DMVEAATTARADQLEMVAEWFDDVAAAAARATDRLDFTARVLDAGAMEEH
VSDDARPHDAAAQPQVQSDTSAK*
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mRNA from alignment at tig00004403_pilon:787252..787923+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1527.t1 ID=Gchil1527.t1|Name=Gchil1527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00004403_pilon:787252..787923+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCCGCGTTACGACGCCGCGTGTGTACGACGTGCATCGCGCGCTTGT
CGCGTTTCGAGCCTCCATCGCCTCTACGCGCTTCGCGTCTTCCTCAGTCT
CTTCCACCTCGACCCCAtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcg
tcgGGCGACGCGCAGCGGGACGAGGGCGAATTGGGCGACAGCCCGGCCAC
GCGCCACGCGCTGCAAGCCGCGTTTGAACGGCGCGCGGCGCATGCCATGC
GGTATGAGTACTTTGCGCAGCGCGCCGAGATGGAGGCCGAGGTGGAGGCG
GCGCATATGTTACGCTCCATGAATCGCGCATGCGTGCAACAGGCGTTGGG
CTGCTTGGAGCTGTTGGAACAAGATGAAGATGCGGAGTTTGGTGCCACGC
TCACCAATGTGGAGCTTATGGCTGACGAGGAACGCGATTGTGCCGAGCAT
GATATGGTGGAGGCGGCCACTACGGCGCGCGCCGATCAACTTGAGATGGT
TGCCGAGTGGTTTGACGACGTGGCGGCGGCGGCTGCGCGCGCTACAGATC
GCCTTGACTTTACGGCGCGCGTGCTGGACGCTGGTGCCATGGAAGAGCAC
GTGTCGGACGATGCGCGCCCGCATGACGCCGCCGCCCAACCCCAAGTACA
AAGTGACACCTCCGCCAAGTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:787252..787923+

>Gchil1527.t1 ID=Gchil1527.t1|Name=Gchil1527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=672bp|location=Sequence derived from alignment at tig00004403_pilon:787252..787923+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCCGCGTTACGACGCCGCGTGTGTACGACGTGCATCGCGCGCTTGT
CGCGTTTCGAGCCTCCATCGCCTCTACGCGCTTCGCGTCTTCCTCAGTCT
CTTCCACCTCGACCCCAtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcg
tcgGGCGACGCGCAGCGGGACGAGGGCGAATTGGGCGACAGCCCGGCCAC
GCGCCACGCGCTGCAAGCCGCGTTTGAACGGCGCGCGGCGCATGCCATGC
GGTATGAGTACTTTGCGCAGCGCGCCGAGATGGAGGCCGAGGTGGAGGCG
GCGCATATGTTACGCTCCATGAATCGCGCATGCGTGCAACAGGCGTTGGG
CTGCTTGGAGCTGTTGGAACAAGATGAAGATGCGGAGTTTGGTGCCACGC
TCACCAATGTGGAGCTTATGGCTGACGAGGAACGCGATTGTGCCGAGCAT
GATATGGTGGAGGCGGCCACTACGGCGCGCGCCGATCAACTTGAGATGGT
TGCCGAGTGGTTTGACGACGTGGCGGCGGCGGCTGCGCGCGCTACAGATC
GCCTTGACTTTACGGCGCGCGTGCTGGACGCTGGTGCCATGGAAGAGCAC
GTGTCGGACGATGCGCGCCCGCATGACGCCGCCGCCCAACCCCAAGTACA
AAGTGACACCTCCGCCAAGTAA
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