Gchil1525.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1525.t1
Unique Name	Gchil1525.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	326

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:783926..784903 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005851456.1
PFAMs	DUF1731,Epimerase
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K07071
Evalue	3.25e-75
EggNOG OGs	COG1090@1\|root,KOG3019@2759\|Eukaryota,37Q1H@33090\|Viridiplantae,34H8Z@3041\|Chlorophyta
Description	Domain of unknown function (DUF1731)
COG category	F
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1525	Gchil1525	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 783926..784903 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1525.t1.start1	Gchil1525.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 783926..783928 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1525.t1.CDS1	Gchil1525.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 783926..784903 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1525.t1.exon1	Gchil1525.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 783926..784903 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1525.t1.stop1	Gchil1525.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 784901..784903 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1525.t1	Gchil1525.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 783926..784903 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:783926..784903+
coding sequence from alignment at tig00004403_pilon:783926..784903+

mRNA sequence

>Gchil1525.t1 ID=Gchil1525.t1|Name=Gchil1525.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=326bp
MSASEASADARHIVIAGGAGFVGTALTKRLLSCGDRVTILTRRASAVVPS
AASRVLWTPDAPRREPQPWERAVRDAHAVVNLCGAPVVSRWDAAGKKRIT
QSRLTPTARLAACIAAQPVNERPHAFVSASAVGYYGTYDADTPLLTENAP
AGSDFLGELCTQWEAAAHTPFAKEEQASHPRVVTLRTGVVLGARGGALAR
MVPPFAAFVGGAVGSGRQIVSWIHVDDVVRIVQRALCDESRMSGAYNVTA
PNAVSMSELAAALGETMRRPAVLPVPEVALRVLYGDGCSVVTRGQRVVPD
RLLRDGFHFEYAFVRDALRAVMAEW*

spliced messenger RNA

>Gchil1525.t1 ID=Gchil1525.t1|Name=Gchil1525.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00004403_pilon:783926..784903+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgagcgccagcgaagccagcgccgacgcgcgacACATAGTCATAGCCGG
TGGAGCGGGCTTTGTAGGAACCGCACTCACCAAGCGTTTACTTTCATGCG
GCGATCGCGTCACAATACTCACGCGTCGTGCGTCGGCCGTCGTGCCCTCC
GCCGCCTCACGCGTGCTATGGACGCCCGATGCGCCGCGCCGCGAGCCGCA
GCCCTGGGAACGTGCTGTGCGCGACGCGCACGCAGTGGTGAATCTGTGCG
GGGCGCCCGTGGTCAGTCGTTGGGACGCTGCTGGCAAGAAACGTATCACG
CAGTCGCGACTCACGCCCACGGCGCGTTTGGCGGCGTGCATAGCTGCGCA
ACCCGTGAATGAGCGTCCACACGCGTTTGTCAGTGCGTCTGCGGTGGGTT
ATTATGGTACGTATGACGCCGACACGCCCTTGTTAACGGAGAATGCGCCG
GCGGGCAGCGACTTTCTGGGCGAGCTGTGCACACAATGGGAAGCAGCTGC
GCACACCCCATTCGCCAAAGAAGAGCAAGCGAGCCATCCGCGCGTGGTGA
CGCTACGCACGGGCGTAGTACTTGGCGCGCGCGGCGGTGCACTAGCGCGC
ATGGTACCGCCGTTTGCGGCGTTTGTAGGTGGCGCAGTGGGCAGTGGACG
ACAGATAGTATCTTGGATACATGTTGACGACGTGGTACGAATTGTGCAAC
GTGCGTTGTGCGACGAATCGCGCATGAGTGGCGCATACAATGTGACAGCG
CCAAACGCGGTGAGTATGAGCGAGCTTGCGGCCGCGCTGGGCGAGACCAT
GCGACGCCCGGCCGTGCTGCCCGTGCCCGAGGTGGCGCTGCGCGTGCTGT
ACGGCGACGGTTGCTCGGTGGTGACGCGAGGGCAGCGCGTCGTGCCCGAC
CGGCTGCTGCGCGACGGCTTCCACTTCGAGTACGCCTTCGTCCGCGACGC
GTTGCGCGCCGTCATGGCCGAGTGGTGA

protein sequence of Gchil1525.t1

>Gchil1525.t1 ID=Gchil1525.t1|Name=Gchil1525.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=326bp
MSASEASADARHIVIAGGAGFVGTALTKRLLSCGDRVTILTRRASAVVPS
AASRVLWTPDAPRREPQPWERAVRDAHAVVNLCGAPVVSRWDAAGKKRIT
QSRLTPTARLAACIAAQPVNERPHAFVSASAVGYYGTYDADTPLLTENAP
AGSDFLGELCTQWEAAAHTPFAKEEQASHPRVVTLRTGVVLGARGGALAR
MVPPFAAFVGGAVGSGRQIVSWIHVDDVVRIVQRALCDESRMSGAYNVTA
PNAVSMSELAAALGETMRRPAVLPVPEVALRVLYGDGCSVVTRGQRVVPD
RLLRDGFHFEYAFVRDALRAVMAEW*

mRNA from alignment at tig00004403_pilon:783926..784903+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1525.t1 ID=Gchil1525.t1|Name=Gchil1525.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00004403_pilon:783926..784903+ (Gracilaria chilensis NLEC103_M9 male)
atgagcgccagcgaagccagcgccgacgcgcgacACATAGTCATAGCCGG
TGGAGCGGGCTTTGTAGGAACCGCACTCACCAAGCGTTTACTTTCATGCG
GCGATCGCGTCACAATACTCACGCGTCGTGCGTCGGCCGTCGTGCCCTCC
GCCGCCTCACGCGTGCTATGGACGCCCGATGCGCCGCGCCGCGAGCCGCA
GCCCTGGGAACGTGCTGTGCGCGACGCGCACGCAGTGGTGAATCTGTGCG
GGGCGCCCGTGGTCAGTCGTTGGGACGCTGCTGGCAAGAAACGTATCACG
CAGTCGCGACTCACGCCCACGGCGCGTTTGGCGGCGTGCATAGCTGCGCA
ACCCGTGAATGAGCGTCCACACGCGTTTGTCAGTGCGTCTGCGGTGGGTT
ATTATGGTACGTATGACGCCGACACGCCCTTGTTAACGGAGAATGCGCCG
GCGGGCAGCGACTTTCTGGGCGAGCTGTGCACACAATGGGAAGCAGCTGC
GCACACCCCATTCGCCAAAGAAGAGCAAGCGAGCCATCCGCGCGTGGTGA
CGCTACGCACGGGCGTAGTACTTGGCGCGCGCGGCGGTGCACTAGCGCGC
ATGGTACCGCCGTTTGCGGCGTTTGTAGGTGGCGCAGTGGGCAGTGGACG
ACAGATAGTATCTTGGATACATGTTGACGACGTGGTACGAATTGTGCAAC
GTGCGTTGTGCGACGAATCGCGCATGAGTGGCGCATACAATGTGACAGCG
CCAAACGCGGTGAGTATGAGCGAGCTTGCGGCCGCGCTGGGCGAGACCAT
GCGACGCCCGGCCGTGCTGCCCGTGCCCGAGGTGGCGCTGCGCGTGCTGT
ACGGCGACGGTTGCTCGGTGGTGACGCGAGGGCAGCGCGTCGTGCCCGAC
CGGCTGCTGCGCGACGGCTTCCACTTCGAGTACGCCTTCGTCCGCGACGC
GTTGCGCGCCGTCATGGCCGAGTGGTGA

Coding sequence (CDS) from alignment at tig00004403_pilon:783926..784903+

>Gchil1525.t1 ID=Gchil1525.t1|Name=Gchil1525.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=978bp|location=Sequence derived from alignment at tig00004403_pilon:783926..784903+ (Gracilaria chilensis NLEC103_M9 male)
atgagcgccagcgaagccagcgccgacgcgcgacACATAGTCATAGCCGG
TGGAGCGGGCTTTGTAGGAACCGCACTCACCAAGCGTTTACTTTCATGCG
GCGATCGCGTCACAATACTCACGCGTCGTGCGTCGGCCGTCGTGCCCTCC
GCCGCCTCACGCGTGCTATGGACGCCCGATGCGCCGCGCCGCGAGCCGCA
GCCCTGGGAACGTGCTGTGCGCGACGCGCACGCAGTGGTGAATCTGTGCG
GGGCGCCCGTGGTCAGTCGTTGGGACGCTGCTGGCAAGAAACGTATCACG
CAGTCGCGACTCACGCCCACGGCGCGTTTGGCGGCGTGCATAGCTGCGCA
ACCCGTGAATGAGCGTCCACACGCGTTTGTCAGTGCGTCTGCGGTGGGTT
ATTATGGTACGTATGACGCCGACACGCCCTTGTTAACGGAGAATGCGCCG
GCGGGCAGCGACTTTCTGGGCGAGCTGTGCACACAATGGGAAGCAGCTGC
GCACACCCCATTCGCCAAAGAAGAGCAAGCGAGCCATCCGCGCGTGGTGA
CGCTACGCACGGGCGTAGTACTTGGCGCGCGCGGCGGTGCACTAGCGCGC
ATGGTACCGCCGTTTGCGGCGTTTGTAGGTGGCGCAGTGGGCAGTGGACG
ACAGATAGTATCTTGGATACATGTTGACGACGTGGTACGAATTGTGCAAC
GTGCGTTGTGCGACGAATCGCGCATGAGTGGCGCATACAATGTGACAGCG
CCAAACGCGGTGAGTATGAGCGAGCTTGCGGCCGCGCTGGGCGAGACCAT
GCGACGCCCGGCCGTGCTGCCCGTGCCCGAGGTGGCGCTGCGCGTGCTGT
ACGGCGACGGTTGCTCGGTGGTGACGCGAGGGCAGCGCGTCGTGCCCGAC
CGGCTGCTGCGCGACGGCTTCCACTTCGAGTACGCCTTCGTCCGCGACGC
GTTGCGCGCCGTCATGGCCGAGTGGTGA