Gchil1524.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1524.t1
Unique NameGchil1524.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length321
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:755416..756378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S29_85V6.1
PFAMsSNARE
Max annot lvl35493|Streptophyta
KEGG koko:K08489
KEGG Pathwayko04130,map04130
GOsGO:0000139,GO:0000149,GO:0002790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006810,GO:0006906,GO:0006996,GO:0007030,GO:0007034,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0022406,GO:0031090,GO:0031201,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032588,GO:0032940,GO:0032991,GO:0033036,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0048278,GO:0048284,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0061024,GO:0061025,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0140056
Evalue9.38e-40
EggNOG OGsCOG5325@1|root,KOG0809@2759|Eukaryota,37JM2@33090|Viridiplantae,3G737@35493|Streptophyta
DescriptionBelongs to the syntaxin family
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1524Gchil1524Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 755416..756378 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1524.t1.stop1Gchil1524.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 755416..755418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1524.t1.CDS1Gchil1524.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 755416..756378 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1524.t1.exon1Gchil1524.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 755416..756378 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1524.t1.start1Gchil1524.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 756376..756378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1524.t1Gchil1524.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 755416..756378 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1524.t1 ID=Gchil1524.t1|Name=Gchil1524.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=321bp
MTSRDRTALFLRYRQEAKTLHAASPHAVIAPPHPSTDAVPSDQRPRHPAS
HRRTARMRPDWAFVHADLKGDIVEMRAMLAELSALHAKHLLPSFGDVDTS
RLEHDIRLRSQRLTDNLRAAEHKLRAITTTNTTTATTHRPPAARDVEAQI
LRNMQKRFASPLQQLSLSFRNKQKAYLLKLQDMRESLSEHSDPGAQDVIV
TFDADADALDPALSESQLLTVEGASGLARERTRELRRVVANVNDLATLVK
DLAALVVDQGTVLDRIDYNLEHVKVNTFGALSELRITDRNERKRHAVCCI
IVLSIACGIMFIILIYKWTS*
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spliced messenger RNA

>Gchil1524.t1 ID=Gchil1524.t1|Name=Gchil1524.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=963bp|location=Sequence derived from alignment at tig00004403_pilon:755416..756378- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCCAGAGATCGCACCGCCCTCTTCCTGCGTTACCGTCAGGAGGC
CAAAACCCTGCACGCCGCCTCTCCGCATGCCGTCATCGCTCCCCCCCACC
CCTCCACCGATGCCGTTCCGTCCGACCAACGCCCCCGCCATCCCGCCTCG
CACCGCCGCACTGCCCGCATGCGCCCGGACTGGGCCTTCGTCCACGCCGA
TCTCAAGGGCGACATCGTCGAGATGCGCGCCATGCTCGCCGAGCTCTCCG
CCCTGCACGCCAAGCATCTGCTCCCGTCCTTTGGCGACGTAGACACCTCC
CGTCTGGAGCACGACATCCGTCTGCGCTCCCAGCGTCTCACCGACAATTT
GCGCGCCGCGGAACACAAACTGCGCGCCATTACTACTACTAACACCACCA
CCGCCACTACCCACCGCCCACCTGCCGCCCGCGACGTAGAGGCTCAAATC
TTGCGCAACATGCAAAAGCGTTTTGCATCCCCCCTGCAACAATTGTCGCT
CTCATTTCGCAACAAGCAAAAGGCATACCTGCTCAAGCTGCAGGACATGA
GGGAGTCGCTCAGTGAGCATTCCGATCCGGGCGCGCAGGACGTTATCGTC
ACCTTTGACGCTGACGCCGATGCGCTTGACCCGGCCTTGTCCGAGAGTCA
ACTGCTTACCGTCGAGGGGGCGTCGGGCCTGGCGCGCGAGAGGACGCGTG
AGCTGCGACGTGTCGTCGCCAATGTCAACGATCTTGCCACCCTCGTCAAG
GACTTGGCCGCGCTTGTCGTCGACCAGGGCACCGTGCTTGACAGGATCGA
CTACAACTTAGAGCATGTCAAAGTCAATACGTTTGGAGCTCTGAGCGAAC
TGCGTATCACCGACAGAAACGAGAGAAAGCGACATGCTGTGTGCTGCATC
ATTGTTCTGTCCATCGCCTGTGGCATCATGTTTATCATTCTAATCTACAA
GTGGACTTCATAG
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protein sequence of Gchil1524.t1

>Gchil1524.t1 ID=Gchil1524.t1|Name=Gchil1524.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=321bp
MTSRDRTALFLRYRQEAKTLHAASPHAVIAPPHPSTDAVPSDQRPRHPAS
HRRTARMRPDWAFVHADLKGDIVEMRAMLAELSALHAKHLLPSFGDVDTS
RLEHDIRLRSQRLTDNLRAAEHKLRAITTTNTTTATTHRPPAARDVEAQI
LRNMQKRFASPLQQLSLSFRNKQKAYLLKLQDMRESLSEHSDPGAQDVIV
TFDADADALDPALSESQLLTVEGASGLARERTRELRRVVANVNDLATLVK
DLAALVVDQGTVLDRIDYNLEHVKVNTFGALSELRITDRNERKRHAVCCI
IVLSIACGIMFIILIYKWTS*
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mRNA from alignment at tig00004403_pilon:755416..756378-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1524.t1 ID=Gchil1524.t1|Name=Gchil1524.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=963bp|location=Sequence derived from alignment at tig00004403_pilon:755416..756378- (Gracilaria chilensis NLEC103_M9 male)
ATGACGTCCAGAGATCGCACCGCCCTCTTCCTGCGTTACCGTCAGGAGGC
CAAAACCCTGCACGCCGCCTCTCCGCATGCCGTCATCGCTCCCCCCCACC
CCTCCACCGATGCCGTTCCGTCCGACCAACGCCCCCGCCATCCCGCCTCG
CACCGCCGCACTGCCCGCATGCGCCCGGACTGGGCCTTCGTCCACGCCGA
TCTCAAGGGCGACATCGTCGAGATGCGCGCCATGCTCGCCGAGCTCTCCG
CCCTGCACGCCAAGCATCTGCTCCCGTCCTTTGGCGACGTAGACACCTCC
CGTCTGGAGCACGACATCCGTCTGCGCTCCCAGCGTCTCACCGACAATTT
GCGCGCCGCGGAACACAAACTGCGCGCCATTACTACTACTAACACCACCA
CCGCCACTACCCACCGCCCACCTGCCGCCCGCGACGTAGAGGCTCAAATC
TTGCGCAACATGCAAAAGCGTTTTGCATCCCCCCTGCAACAATTGTCGCT
CTCATTTCGCAACAAGCAAAAGGCATACCTGCTCAAGCTGCAGGACATGA
GGGAGTCGCTCAGTGAGCATTCCGATCCGGGCGCGCAGGACGTTATCGTC
ACCTTTGACGCTGACGCCGATGCGCTTGACCCGGCCTTGTCCGAGAGTCA
ACTGCTTACCGTCGAGGGGGCGTCGGGCCTGGCGCGCGAGAGGACGCGTG
AGCTGCGACGTGTCGTCGCCAATGTCAACGATCTTGCCACCCTCGTCAAG
GACTTGGCCGCGCTTGTCGTCGACCAGGGCACCGTGCTTGACAGGATCGA
CTACAACTTAGAGCATGTCAAAGTCAATACGTTTGGAGCTCTGAGCGAAC
TGCGTATCACCGACAGAAACGAGAGAAAGCGACATGCTGTGTGCTGCATC
ATTGTTCTGTCCATCGCCTGTGGCATCATGTTTATCATTCTAATCTACAA
GTGGACTTCATAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:755416..756378-

>Gchil1524.t1 ID=Gchil1524.t1|Name=Gchil1524.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=963bp|location=Sequence derived from alignment at tig00004403_pilon:755416..756378- (Gracilaria chilensis NLEC103_M9 male)
ATGACGTCCAGAGATCGCACCGCCCTCTTCCTGCGTTACCGTCAGGAGGC
CAAAACCCTGCACGCCGCCTCTCCGCATGCCGTCATCGCTCCCCCCCACC
CCTCCACCGATGCCGTTCCGTCCGACCAACGCCCCCGCCATCCCGCCTCG
CACCGCCGCACTGCCCGCATGCGCCCGGACTGGGCCTTCGTCCACGCCGA
TCTCAAGGGCGACATCGTCGAGATGCGCGCCATGCTCGCCGAGCTCTCCG
CCCTGCACGCCAAGCATCTGCTCCCGTCCTTTGGCGACGTAGACACCTCC
CGTCTGGAGCACGACATCCGTCTGCGCTCCCAGCGTCTCACCGACAATTT
GCGCGCCGCGGAACACAAACTGCGCGCCATTACTACTACTAACACCACCA
CCGCCACTACCCACCGCCCACCTGCCGCCCGCGACGTAGAGGCTCAAATC
TTGCGCAACATGCAAAAGCGTTTTGCATCCCCCCTGCAACAATTGTCGCT
CTCATTTCGCAACAAGCAAAAGGCATACCTGCTCAAGCTGCAGGACATGA
GGGAGTCGCTCAGTGAGCATTCCGATCCGGGCGCGCAGGACGTTATCGTC
ACCTTTGACGCTGACGCCGATGCGCTTGACCCGGCCTTGTCCGAGAGTCA
ACTGCTTACCGTCGAGGGGGCGTCGGGCCTGGCGCGCGAGAGGACGCGTG
AGCTGCGACGTGTCGTCGCCAATGTCAACGATCTTGCCACCCTCGTCAAG
GACTTGGCCGCGCTTGTCGTCGACCAGGGCACCGTGCTTGACAGGATCGA
CTACAACTTAGAGCATGTCAAAGTCAATACGTTTGGAGCTCTGAGCGAAC
TGCGTATCACCGACAGAAACGAGAGAAAGCGACATGCTGTGTGCTGCATC
ATTGTTCTGTCCATCGCCTGTGGCATCATGTTTATCATTCTAATCTACAA
GTGGACTTCATAG
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