Gchil1522.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1522.t1
Unique Name	Gchil1522.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	620

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:748615..750474 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1522	Gchil1522	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 748615..750474 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1522.t1.start1	Gchil1522.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 748615..748617 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1522.t1.CDS1	Gchil1522.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 748615..750474 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1522.t1.exon1	Gchil1522.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 748615..750474 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1522.t1.stop1	Gchil1522.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 750472..750474 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1522.t1	Gchil1522.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 748615..750474 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:748615..750474+
coding sequence from alignment at tig00004403_pilon:748615..750474+

mRNA sequence

>Gchil1522.t1 ID=Gchil1522.t1|Name=Gchil1522.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=620bp
MATATPLDGTPSLRSVRDKYLALLLTGNPPTHAPPAPLAPNWTPGQHLPQ
APAVHWASPITPPAPTENDVRLAEIAAGLVAAGNTEKRHTDAIRRLVGEL
DRSERKVRHLERRRRGSSHTPHAHVQRESGHRVSFGEAKRNIRFTPRTPR
YEAPVRKAASEDHRRPSHHFDERDILNQKELDELHSLRKEREQWLKSKDR
SDKEARRLGIMLADIKRNTQRLLEERHSHLKAISRLQDEVSECKRNAALS
DVEHKFNSSRASNIENVTPPRGRGRRDSSPASALRAPGAYVDLDPIDIRR
EPEFEHLEREWHGHRSIPSSRGRNFHEVEQVSPSPIVQSRREHELRDELR
LVIEENGKLTERISSLEQECTELVKRVRFGPAVYSREEDARPVFEERRMP
ENHPPQQSSFAGDAPHELSHPEVNSEARPPSESERVLGHTAMREEPHREE
LTTNHPGDSVDQKPSTLVTSGKLISPSLEEGIVKLLEEVDVLEGVSHAIH
FERSPSEAERMQETVELPELNEDQVTDEVDSSKPPAPAALAPPASHSPRQ
VLLDTVHRLERIRSSLSLKYGKWLEAVANDDTACDETQVSAGSVHTPPQN
KEITTGSMNTEIINKLIEN*

spliced messenger RNA

>Gchil1522.t1 ID=Gchil1522.t1|Name=Gchil1522.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1860bp|location=Sequence derived from alignment at tig00004403_pilon:748615..750474+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACGGCGACGCCCCTGGACGGCACGCCCAGTCTTCGCTCCGTGCG
CGATAAGTACCTGGCTTTACTTCTCACTGGCAATCCCCCTACTCACGCGC
CGCCCGCCCCGCTGGCCCCTAATTGGACTCCTGGCCAGCATCTTCCCCAA
GCGCCGGCTGTGCACTGGGCATCCCCTATCACGCCACCAGCTCCGACGGA
GAACGACGTGCGTCTGGCGGAAATAGCTGCAGGTCTCGTTGCCGCAGGCA
ACACTGAGAAACGTCACACAGATGCAATTCGCCGCCTAGTGGGCGAACTA
GATCGTTCTGAAAGGAAGGTTCGTCACTTGGAGAGGCGACGGAGGGGCAG
TTCTCACACCCCTCACGCCCACGTGCAAAGGGAAAGTGGCCATCGCGTTT
CTTTCGGCGAAGCGAAAAGAAATATTCGTTTCACACCTCGAACTCCTCGA
TACGAAGCTCCCGTCAGAAAAGCTGCTTCGGAAGACCACCGCCGCCCGTC
CCATCACTTCGACGAGCGCGACATCTTGAACCAGAAAGAACTCGATGAAT
TGCATTCATTGCGAAAGGAGAGAGAACAATGGCTCAAGTCTAAAGATCGT
TCTGATAAGGAGGCCCGTCGTTTGGGTATTATGCTTGCGGATATCAAAAG
AAACACACAACGTCTCCTAGAAGAGCGACACAGCCACCTTAAGGCCATTT
CGCGTTTACAAGACGAGGTCAGCGAATGCAAACGAAATGCAGCTTTGAGC
GACGTTGAGCACAAGTTCAACTCTAGTCGAGCAAGTAACATTGAAAATGT
GACTCCTCCACGCGGTCGGGGAAGAAGAGATAGTTCACCCGCATCAGCCC
TTCGCGCACCTGGTGCTTACGTCGACCTGGATCCGATCGATATTCGTCGC
GAACCAGAGTTTGAACATTTAGAACGTGAATGGCATGGGCATCGTTCGAT
ACCTTCTTCAAGAGGGAGAAATTTTCATGAGGTTGAACAGGTTTCACCTT
CCCCAATAGTGCAGAGCAGACGAGAGCATGAGCTTAGAGACGAGCTGCGC
CTGGTTATCGAGGAGAATGGTAAGCTGACCGAGCGTATATCAAGTCTCGA
ACAAGAGTGCACAGAACTTGTGAAGAGAGTTCGCTTTGGTCCGGCAGTGT
ACTCACGAGAAGAAGATGCCCGTCCAGTCTTCGAGGAGCGACGCATGCCC
GAGAATCATCCGCCTCAACAGAGCTCTTTTGCAGGGGATGCCCCGCACGA
GCTATCTCATCCGGAGGTGAATTCGGAAGCCCGTCCTCCATCAGAATCCG
AAAGAGTACTTGGCCACACAGCTATGCGGGAAGAACCCCATAGAGAAGAG
TTAACGACCAACCACCCTGGAGACAGTGTGGATCAAAAACCGTCCACCCT
TGTTACATCTGGAAAGCTTATATCACCTTCGCTTGAAGAAGGGATAGTGA
AGTTGTTGGAAGAGGTTGACGTGCTGGAGGGTGTATCTCATGCCATCCAT
TTCGAAAGATCTCCATCTGAAGCTGAAAGAATGCAAGAAACAGTGGAGTT
GCCGGAGCTGAATGAAGACCAAGTGACCGATGAGGTCGATAGCTCCAAAC
CGCCAGCACCGGCTGCCTTGGCACCACCTGCGTCCCATTCCCCACGACAA
GTACTACTTGACACTGTCCACCGTCTTGAACGGATTCGCTCGAGTCTTTC
ACTGAAGTACGGAAAGTGGTTGGAAGCAGTTGCCAACGACGATACCGCTT
GTGATGAAACACAAGTTTCTGCGGGGAGTGTACATACACCCCCACAGAAC
AAGGAAATAACTACAGGCTCAATGAATACTGAGATTATCAATAAACTTAT
TGAGAACTGA

protein sequence of Gchil1522.t1

>Gchil1522.t1 ID=Gchil1522.t1|Name=Gchil1522.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=620bp
MATATPLDGTPSLRSVRDKYLALLLTGNPPTHAPPAPLAPNWTPGQHLPQ
APAVHWASPITPPAPTENDVRLAEIAAGLVAAGNTEKRHTDAIRRLVGEL
DRSERKVRHLERRRRGSSHTPHAHVQRESGHRVSFGEAKRNIRFTPRTPR
YEAPVRKAASEDHRRPSHHFDERDILNQKELDELHSLRKEREQWLKSKDR
SDKEARRLGIMLADIKRNTQRLLEERHSHLKAISRLQDEVSECKRNAALS
DVEHKFNSSRASNIENVTPPRGRGRRDSSPASALRAPGAYVDLDPIDIRR
EPEFEHLEREWHGHRSIPSSRGRNFHEVEQVSPSPIVQSRREHELRDELR
LVIEENGKLTERISSLEQECTELVKRVRFGPAVYSREEDARPVFEERRMP
ENHPPQQSSFAGDAPHELSHPEVNSEARPPSESERVLGHTAMREEPHREE
LTTNHPGDSVDQKPSTLVTSGKLISPSLEEGIVKLLEEVDVLEGVSHAIH
FERSPSEAERMQETVELPELNEDQVTDEVDSSKPPAPAALAPPASHSPRQ
VLLDTVHRLERIRSSLSLKYGKWLEAVANDDTACDETQVSAGSVHTPPQN
KEITTGSMNTEIINKLIEN*

mRNA from alignment at tig00004403_pilon:748615..750474+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1522.t1 ID=Gchil1522.t1|Name=Gchil1522.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1860bp|location=Sequence derived from alignment at tig00004403_pilon:748615..750474+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACGGCGACGCCCCTGGACGGCACGCCCAGTCTTCGCTCCGTGCG
CGATAAGTACCTGGCTTTACTTCTCACTGGCAATCCCCCTACTCACGCGC
CGCCCGCCCCGCTGGCCCCTAATTGGACTCCTGGCCAGCATCTTCCCCAA
GCGCCGGCTGTGCACTGGGCATCCCCTATCACGCCACCAGCTCCGACGGA
GAACGACGTGCGTCTGGCGGAAATAGCTGCAGGTCTCGTTGCCGCAGGCA
ACACTGAGAAACGTCACACAGATGCAATTCGCCGCCTAGTGGGCGAACTA
GATCGTTCTGAAAGGAAGGTTCGTCACTTGGAGAGGCGACGGAGGGGCAG
TTCTCACACCCCTCACGCCCACGTGCAAAGGGAAAGTGGCCATCGCGTTT
CTTTCGGCGAAGCGAAAAGAAATATTCGTTTCACACCTCGAACTCCTCGA
TACGAAGCTCCCGTCAGAAAAGCTGCTTCGGAAGACCACCGCCGCCCGTC
CCATCACTTCGACGAGCGCGACATCTTGAACCAGAAAGAACTCGATGAAT
TGCATTCATTGCGAAAGGAGAGAGAACAATGGCTCAAGTCTAAAGATCGT
TCTGATAAGGAGGCCCGTCGTTTGGGTATTATGCTTGCGGATATCAAAAG
AAACACACAACGTCTCCTAGAAGAGCGACACAGCCACCTTAAGGCCATTT
CGCGTTTACAAGACGAGGTCAGCGAATGCAAACGAAATGCAGCTTTGAGC
GACGTTGAGCACAAGTTCAACTCTAGTCGAGCAAGTAACATTGAAAATGT
GACTCCTCCACGCGGTCGGGGAAGAAGAGATAGTTCACCCGCATCAGCCC
TTCGCGCACCTGGTGCTTACGTCGACCTGGATCCGATCGATATTCGTCGC
GAACCAGAGTTTGAACATTTAGAACGTGAATGGCATGGGCATCGTTCGAT
ACCTTCTTCAAGAGGGAGAAATTTTCATGAGGTTGAACAGGTTTCACCTT
CCCCAATAGTGCAGAGCAGACGAGAGCATGAGCTTAGAGACGAGCTGCGC
CTGGTTATCGAGGAGAATGGTAAGCTGACCGAGCGTATATCAAGTCTCGA
ACAAGAGTGCACAGAACTTGTGAAGAGAGTTCGCTTTGGTCCGGCAGTGT
ACTCACGAGAAGAAGATGCCCGTCCAGTCTTCGAGGAGCGACGCATGCCC
GAGAATCATCCGCCTCAACAGAGCTCTTTTGCAGGGGATGCCCCGCACGA
GCTATCTCATCCGGAGGTGAATTCGGAAGCCCGTCCTCCATCAGAATCCG
AAAGAGTACTTGGCCACACAGCTATGCGGGAAGAACCCCATAGAGAAGAG
TTAACGACCAACCACCCTGGAGACAGTGTGGATCAAAAACCGTCCACCCT
TGTTACATCTGGAAAGCTTATATCACCTTCGCTTGAAGAAGGGATAGTGA
AGTTGTTGGAAGAGGTTGACGTGCTGGAGGGTGTATCTCATGCCATCCAT
TTCGAAAGATCTCCATCTGAAGCTGAAAGAATGCAAGAAACAGTGGAGTT
GCCGGAGCTGAATGAAGACCAAGTGACCGATGAGGTCGATAGCTCCAAAC
CGCCAGCACCGGCTGCCTTGGCACCACCTGCGTCCCATTCCCCACGACAA
GTACTACTTGACACTGTCCACCGTCTTGAACGGATTCGCTCGAGTCTTTC
ACTGAAGTACGGAAAGTGGTTGGAAGCAGTTGCCAACGACGATACCGCTT
GTGATGAAACACAAGTTTCTGCGGGGAGTGTACATACACCCCCACAGAAC
AAGGAAATAACTACAGGCTCAATGAATACTGAGATTATCAATAAACTTAT
TGAGAACTGA

Coding sequence (CDS) from alignment at tig00004403_pilon:748615..750474+

>Gchil1522.t1 ID=Gchil1522.t1|Name=Gchil1522.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1860bp|location=Sequence derived from alignment at tig00004403_pilon:748615..750474+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACGGCGACGCCCCTGGACGGCACGCCCAGTCTTCGCTCCGTGCG
CGATAAGTACCTGGCTTTACTTCTCACTGGCAATCCCCCTACTCACGCGC
CGCCCGCCCCGCTGGCCCCTAATTGGACTCCTGGCCAGCATCTTCCCCAA
GCGCCGGCTGTGCACTGGGCATCCCCTATCACGCCACCAGCTCCGACGGA
GAACGACGTGCGTCTGGCGGAAATAGCTGCAGGTCTCGTTGCCGCAGGCA
ACACTGAGAAACGTCACACAGATGCAATTCGCCGCCTAGTGGGCGAACTA
GATCGTTCTGAAAGGAAGGTTCGTCACTTGGAGAGGCGACGGAGGGGCAG
TTCTCACACCCCTCACGCCCACGTGCAAAGGGAAAGTGGCCATCGCGTTT
CTTTCGGCGAAGCGAAAAGAAATATTCGTTTCACACCTCGAACTCCTCGA
TACGAAGCTCCCGTCAGAAAAGCTGCTTCGGAAGACCACCGCCGCCCGTC
CCATCACTTCGACGAGCGCGACATCTTGAACCAGAAAGAACTCGATGAAT
TGCATTCATTGCGAAAGGAGAGAGAACAATGGCTCAAGTCTAAAGATCGT
TCTGATAAGGAGGCCCGTCGTTTGGGTATTATGCTTGCGGATATCAAAAG
AAACACACAACGTCTCCTAGAAGAGCGACACAGCCACCTTAAGGCCATTT
CGCGTTTACAAGACGAGGTCAGCGAATGCAAACGAAATGCAGCTTTGAGC
GACGTTGAGCACAAGTTCAACTCTAGTCGAGCAAGTAACATTGAAAATGT
GACTCCTCCACGCGGTCGGGGAAGAAGAGATAGTTCACCCGCATCAGCCC
TTCGCGCACCTGGTGCTTACGTCGACCTGGATCCGATCGATATTCGTCGC
GAACCAGAGTTTGAACATTTAGAACGTGAATGGCATGGGCATCGTTCGAT
ACCTTCTTCAAGAGGGAGAAATTTTCATGAGGTTGAACAGGTTTCACCTT
CCCCAATAGTGCAGAGCAGACGAGAGCATGAGCTTAGAGACGAGCTGCGC
CTGGTTATCGAGGAGAATGGTAAGCTGACCGAGCGTATATCAAGTCTCGA
ACAAGAGTGCACAGAACTTGTGAAGAGAGTTCGCTTTGGTCCGGCAGTGT
ACTCACGAGAAGAAGATGCCCGTCCAGTCTTCGAGGAGCGACGCATGCCC
GAGAATCATCCGCCTCAACAGAGCTCTTTTGCAGGGGATGCCCCGCACGA
GCTATCTCATCCGGAGGTGAATTCGGAAGCCCGTCCTCCATCAGAATCCG
AAAGAGTACTTGGCCACACAGCTATGCGGGAAGAACCCCATAGAGAAGAG
TTAACGACCAACCACCCTGGAGACAGTGTGGATCAAAAACCGTCCACCCT
TGTTACATCTGGAAAGCTTATATCACCTTCGCTTGAAGAAGGGATAGTGA
AGTTGTTGGAAGAGGTTGACGTGCTGGAGGGTGTATCTCATGCCATCCAT
TTCGAAAGATCTCCATCTGAAGCTGAAAGAATGCAAGAAACAGTGGAGTT
GCCGGAGCTGAATGAAGACCAAGTGACCGATGAGGTCGATAGCTCCAAAC
CGCCAGCACCGGCTGCCTTGGCACCACCTGCGTCCCATTCCCCACGACAA
GTACTACTTGACACTGTCCACCGTCTTGAACGGATTCGCTCGAGTCTTTC
ACTGAAGTACGGAAAGTGGTTGGAAGCAGTTGCCAACGACGATACCGCTT
GTGATGAAACACAAGTTTCTGCGGGGAGTGTACATACACCCCCACAGAAC
AAGGAAATAACTACAGGCTCAATGAATACTGAGATTATCAATAAACTTAT
TGAGAACTGA