Gchil1520.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1520.t1
Unique NameGchil1520.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length460
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:744391..745770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708147.1
PFAMsMFS_5
Max annot lvl2759|Eukaryota
Evalue6.48e-126
EggNOG OGsKOG4332@1|root,KOG4332@2759|Eukaryota
Descriptionmolybdate ion transmembrane transporter activity
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1520Gchil1520Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 744391..745770 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1520.t1.start1Gchil1520.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 744391..744393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1520.t1.CDS1Gchil1520.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 744391..745770 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1520.t1.exon1Gchil1520.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 744391..745770 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1520.t1.stop1Gchil1520.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 745768..745770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1520.t1Gchil1520.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 744391..745770 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1520.t1 ID=Gchil1520.t1|Name=Gchil1520.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=460bp
MYGYIFSGLMILCVVVRSAQWMMESRSESAEGKSSTQNARTPEFKSFQLN
YLVVYLLAVAADWLQGPYVYALYTEYGYGKKEIGQLFIAGFGSSAVFGTF
VGSVADKYGRKFNVIVFVVMYALSCVTKHSPNFSVLMVGRLLAGIATSIL
FSAFESWLVSEHNSRSHPPSLLSETFSKAQFGNAVVAIVSGQAAGAAAGQ
FGKVAPFDTATIVLGVLGVIVLLTWSENYGDSRQSVGGGLKSAWNMMIAD
EKILLVGIIQSCFESAMYLMVFSWTPALQAASDSMELGEIPHGMIFSSFM
VCIMIGSSLFVFLLKTQPAELFMRNLYILGVMMFTVTAISNNVWEVYGAL
LGFEVICGLYFPAMGTMRAKYVPEVTRSAIMNYFRVPLNAIVCVTLYRNL
ENATVFRLCAVMMAIAVVSQQRLFSVSKASIGTKDDWTREERAELVEEGL
AANVEEATK*
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spliced messenger RNA

>Gchil1520.t1 ID=Gchil1520.t1|Name=Gchil1520.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at tig00004403_pilon:744391..745770+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATGGCTATATTTTTTCTGGGTTGATGATACTATGCGTTGTCGTACG
CTCTGCTCAGTGGATGATGGAGTCACGTTCTGAGAGCGCGGAAGGAAAGT
CAAGCACTCAAAACGCTCGAACTCCGGAATTCAAGTCCTTCCAACTGAAC
TATCTCGTCGTGTACTTGCTTGCTGTAGCGGCAGATTGGTTGCAAGGACC
GTATGTGTATGCACTCTACACAGAATACGGCTACGGCAAGAAGGAAATTG
GACAGCTTTTCATAGCAGGGTTTGGTTCTTCTGCCGTCTTCGGAACTTTC
GTCGGATCAGTTGCGGATAAGTATGGTCGAAAGTTTAACGTTATTGTATT
TGTTGTTATGTATGCATTATCCTGTGTGACGAAGCATTCTCCTAACTTTA
GTGTGCTTATGGTGGGACGCCTTCTAGCCGGAATTGCTACAAGTATCCTG
TTCTCTGCCTTTGAATCATGGCTTGTGTCTGAACACAACAGTCGCTCGCA
TCCCCCGTCGCTGCTGTCTGAGACGTTCTCCAAAGCCCAATTCGGTAACG
CTGTCGTAGCCATTGTTTCTGGACAAGCTGCAGGAGCCGCCGCAGGTCAG
TTCGGAAAGGTGGCCCCATTTGATACGGCCACAATTGTTTTGGGAGTCCT
TGGTGTTATTGTATTACTCACTTGGTCTGAAAACTATGGCGATAGTCGGC
AATCTGTTGGAGGCGGTCTTAAAAGCGCTTGGAATATGATGATTGCCGAT
GAGAAGATTTTGCTTGTGGGTATCATTCAATCTTGCTTCGAATCGGCCAT
GTACCTAATGGTATTCAGTTGGACACCGGCACTGCAAGCAGCATCAGATT
CCATGGAACTCGGGGAGATTCCTCATGGTATGATCTTCAGCTCGTTTATG
GTTTGTATCATGATCGGAAGCAGTCTTTTCGTGTTTCTTCTGAAAACTCA
GCCGGCCGAGTTGTTCATGCGCAACCTCTACATTTTGGGCGTAATGATGT
TCACGGTTACGGCTATTTCGAATAACGTTTGGGAAGTCTATGGGGCTCTG
CTTGGCTTTGAGGTTATATGTGGACTCTACTTTCCAGCAATGGGAACTAT
GCGAGCAAAATATGTTCCAGAAGTAACAAGGTCTGCGATCATGAATTACT
TCCGGGTTCCTCTGAACGCCATAGTCTGTGTAACTCTGTACAGAAATCTA
GAAAATGCGACCGTGTTCCGTCTATGCGCGGTGATGATGGCCATTGCCGT
AGTGAGCCAGCAAAGGCTGTTCAGTGTCTCCAAGGCATCGATTGGAACCA
AGGACGATTGGACTCGTGAGGAAAGAGCGGAACTTGTTGAAGAAGGACTG
GCAGCTAATGTGGAGGAAGCTACAAAATAA
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protein sequence of Gchil1520.t1

>Gchil1520.t1 ID=Gchil1520.t1|Name=Gchil1520.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=460bp
MYGYIFSGLMILCVVVRSAQWMMESRSESAEGKSSTQNARTPEFKSFQLN
YLVVYLLAVAADWLQGPYVYALYTEYGYGKKEIGQLFIAGFGSSAVFGTF
VGSVADKYGRKFNVIVFVVMYALSCVTKHSPNFSVLMVGRLLAGIATSIL
FSAFESWLVSEHNSRSHPPSLLSETFSKAQFGNAVVAIVSGQAAGAAAGQ
FGKVAPFDTATIVLGVLGVIVLLTWSENYGDSRQSVGGGLKSAWNMMIAD
EKILLVGIIQSCFESAMYLMVFSWTPALQAASDSMELGEIPHGMIFSSFM
VCIMIGSSLFVFLLKTQPAELFMRNLYILGVMMFTVTAISNNVWEVYGAL
LGFEVICGLYFPAMGTMRAKYVPEVTRSAIMNYFRVPLNAIVCVTLYRNL
ENATVFRLCAVMMAIAVVSQQRLFSVSKASIGTKDDWTREERAELVEEGL
AANVEEATK*
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mRNA from alignment at tig00004403_pilon:744391..745770+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1520.t1 ID=Gchil1520.t1|Name=Gchil1520.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at tig00004403_pilon:744391..745770+ (Gracilaria chilensis NLEC103_M9 male)
ATGTATGGCTATATTTTTTCTGGGTTGATGATACTATGCGTTGTCGTACG
CTCTGCTCAGTGGATGATGGAGTCACGTTCTGAGAGCGCGGAAGGAAAGT
CAAGCACTCAAAACGCTCGAACTCCGGAATTCAAGTCCTTCCAACTGAAC
TATCTCGTCGTGTACTTGCTTGCTGTAGCGGCAGATTGGTTGCAAGGACC
GTATGTGTATGCACTCTACACAGAATACGGCTACGGCAAGAAGGAAATTG
GACAGCTTTTCATAGCAGGGTTTGGTTCTTCTGCCGTCTTCGGAACTTTC
GTCGGATCAGTTGCGGATAAGTATGGTCGAAAGTTTAACGTTATTGTATT
TGTTGTTATGTATGCATTATCCTGTGTGACGAAGCATTCTCCTAACTTTA
GTGTGCTTATGGTGGGACGCCTTCTAGCCGGAATTGCTACAAGTATCCTG
TTCTCTGCCTTTGAATCATGGCTTGTGTCTGAACACAACAGTCGCTCGCA
TCCCCCGTCGCTGCTGTCTGAGACGTTCTCCAAAGCCCAATTCGGTAACG
CTGTCGTAGCCATTGTTTCTGGACAAGCTGCAGGAGCCGCCGCAGGTCAG
TTCGGAAAGGTGGCCCCATTTGATACGGCCACAATTGTTTTGGGAGTCCT
TGGTGTTATTGTATTACTCACTTGGTCTGAAAACTATGGCGATAGTCGGC
AATCTGTTGGAGGCGGTCTTAAAAGCGCTTGGAATATGATGATTGCCGAT
GAGAAGATTTTGCTTGTGGGTATCATTCAATCTTGCTTCGAATCGGCCAT
GTACCTAATGGTATTCAGTTGGACACCGGCACTGCAAGCAGCATCAGATT
CCATGGAACTCGGGGAGATTCCTCATGGTATGATCTTCAGCTCGTTTATG
GTTTGTATCATGATCGGAAGCAGTCTTTTCGTGTTTCTTCTGAAAACTCA
GCCGGCCGAGTTGTTCATGCGCAACCTCTACATTTTGGGCGTAATGATGT
TCACGGTTACGGCTATTTCGAATAACGTTTGGGAAGTCTATGGGGCTCTG
CTTGGCTTTGAGGTTATATGTGGACTCTACTTTCCAGCAATGGGAACTAT
GCGAGCAAAATATGTTCCAGAAGTAACAAGGTCTGCGATCATGAATTACT
TCCGGGTTCCTCTGAACGCCATAGTCTGTGTAACTCTGTACAGAAATCTA
GAAAATGCGACCGTGTTCCGTCTATGCGCGGTGATGATGGCCATTGCCGT
AGTGAGCCAGCAAAGGCTGTTCAGTGTCTCCAAGGCATCGATTGGAACCA
AGGACGATTGGACTCGTGAGGAAAGAGCGGAACTTGTTGAAGAAGGACTG
GCAGCTAATGTGGAGGAAGCTACAAAATAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:744391..745770+

>Gchil1520.t1 ID=Gchil1520.t1|Name=Gchil1520.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1380bp|location=Sequence derived from alignment at tig00004403_pilon:744391..745770+ (Gracilaria chilensis NLEC103_M9 male)
ATGTATGGCTATATTTTTTCTGGGTTGATGATACTATGCGTTGTCGTACG
CTCTGCTCAGTGGATGATGGAGTCACGTTCTGAGAGCGCGGAAGGAAAGT
CAAGCACTCAAAACGCTCGAACTCCGGAATTCAAGTCCTTCCAACTGAAC
TATCTCGTCGTGTACTTGCTTGCTGTAGCGGCAGATTGGTTGCAAGGACC
GTATGTGTATGCACTCTACACAGAATACGGCTACGGCAAGAAGGAAATTG
GACAGCTTTTCATAGCAGGGTTTGGTTCTTCTGCCGTCTTCGGAACTTTC
GTCGGATCAGTTGCGGATAAGTATGGTCGAAAGTTTAACGTTATTGTATT
TGTTGTTATGTATGCATTATCCTGTGTGACGAAGCATTCTCCTAACTTTA
GTGTGCTTATGGTGGGACGCCTTCTAGCCGGAATTGCTACAAGTATCCTG
TTCTCTGCCTTTGAATCATGGCTTGTGTCTGAACACAACAGTCGCTCGCA
TCCCCCGTCGCTGCTGTCTGAGACGTTCTCCAAAGCCCAATTCGGTAACG
CTGTCGTAGCCATTGTTTCTGGACAAGCTGCAGGAGCCGCCGCAGGTCAG
TTCGGAAAGGTGGCCCCATTTGATACGGCCACAATTGTTTTGGGAGTCCT
TGGTGTTATTGTATTACTCACTTGGTCTGAAAACTATGGCGATAGTCGGC
AATCTGTTGGAGGCGGTCTTAAAAGCGCTTGGAATATGATGATTGCCGAT
GAGAAGATTTTGCTTGTGGGTATCATTCAATCTTGCTTCGAATCGGCCAT
GTACCTAATGGTATTCAGTTGGACACCGGCACTGCAAGCAGCATCAGATT
CCATGGAACTCGGGGAGATTCCTCATGGTATGATCTTCAGCTCGTTTATG
GTTTGTATCATGATCGGAAGCAGTCTTTTCGTGTTTCTTCTGAAAACTCA
GCCGGCCGAGTTGTTCATGCGCAACCTCTACATTTTGGGCGTAATGATGT
TCACGGTTACGGCTATTTCGAATAACGTTTGGGAAGTCTATGGGGCTCTG
CTTGGCTTTGAGGTTATATGTGGACTCTACTTTCCAGCAATGGGAACTAT
GCGAGCAAAATATGTTCCAGAAGTAACAAGGTCTGCGATCATGAATTACT
TCCGGGTTCCTCTGAACGCCATAGTCTGTGTAACTCTGTACAGAAATCTA
GAAAATGCGACCGTGTTCCGTCTATGCGCGGTGATGATGGCCATTGCCGT
AGTGAGCCAGCAAAGGCTGTTCAGTGTCTCCAAGGCATCGATTGGAACCA
AGGACGATTGGACTCGTGAGGAAAGAGCGGAACTTGTTGAAGAAGGACTG
GCAGCTAATGTGGAGGAAGCTACAAAATAA
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