Gchil1519.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1519.t1
Unique NameGchil1519.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length318
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:741657..742610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1519Gchil1519Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 741657..742610 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1519.t1.stop1Gchil1519.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 741657..741659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1519.t1.CDS1Gchil1519.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 741657..742610 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1519.t1.exon1Gchil1519.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 741657..742610 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1519.t1.start1Gchil1519.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 742608..742610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1519.t1Gchil1519.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 741657..742610 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1519.t1 ID=Gchil1519.t1|Name=Gchil1519.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=318bp
MSASETPTVRDDEATSQNVAHAYPPSKSPAPKLFLVVIIAGSILSLIVHR
LDHPLKTSIVNKVTEFTGVSEKTSGAPAMAVCYSGHLGTFPHVFHQNLDI
IRSVDKNADIFFYVDPKDDYHHERSGEHYVEEHDLGVLQPMFDAMKAKVV
RTFAVDAIKTPESSKCYLREGTDKSHYSHHFMQFYAAKECYKMIQAEEEA
SGKRYQWILRLQPNMRIHVTLPPPDKEPRVHLSGTAIALIPRDMADDFFS
VVQVFEPGSCDPLDHLGGGPCENYSYEHETAECLLIKWLSMADIVPSNGV
FVKRKIIYPTPPENADL*
back to top

spliced messenger RNA

>Gchil1519.t1 ID=Gchil1519.t1|Name=Gchil1519.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00004403_pilon:741657..742610- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCGTCAGAAACTCCGACAGTTCGCGATGATGAGGCCACGTCACA
AAATGTGGCTCACGCATATCCGCCTTCAAAGAGTCCAGCTCCGAAGCTGT
TCTTGGTTGTCATAATTGCTGGATCAATCCTTTCCCTTATTGTGCACCGT
TTGGACCATCCCTTGAAGACGTCCATTGTAAACAAGGTCACGGAATTTAC
TGGCGTTTCAGAAAAGACTTCAGGAGCACCAGCAATGGCTGTGTGTTACA
GTGGGCACCTCGGTACTTTTCCTCACGTCTTTCACCAAAACTTAGACATC
ATACGGTCCGTTGATAAGAATGCGGACATATTCTTCTACGTTGACCCCAA
GGATGACTACCACCATGAGCGAAGCGGAGAGCATTATGTGGAGGAACATG
ATTTGGGCGTTCTTCAGCCTATGTTTGATGCGATGAAAGCTAAAGTAGTT
CGCACATTTGCGGTTGATGCCATCAAGACCCCAGAATCGTCCAAATGTTA
TTTGCGTGAAGGAACGGACAAGAGTCATTACAGCCATCACTTCATGCAAT
TCTATGCTGCCAAAGAATGTTACAAGATGATTCAAGCCGAAGAAGAAGCC
TCTGGTAAAAGGTATCAGTGGATACTGCGTCTGCAGCCGAACATGAGGAT
CCACGTTACGCTTCCTCCGCCAGACAAAGAACCGCGAGTCCATTTGAGCG
GCACCGCGATTGCGTTGATTCCAAGAGACATGGCAGATGATTTCTTTTCT
GTTGTGCAAGTATTTGAACCAGGAAGCTGCGACCCTCTCGATCATCTAGG
AGGGGGGCCTTGCGAGAACTACTCGTACGAACACGAGACTGCTGAGTGTT
TGCTTATCAAATGGCTGAGCATGGCCGACATCGTTCCCTCGAACGGTGTC
TTTGTCAAGCGGAAGATCATCTACCCCACGCCGCCTGAAAACGCCGATTT
GTAA
back to top

protein sequence of Gchil1519.t1

>Gchil1519.t1 ID=Gchil1519.t1|Name=Gchil1519.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=318bp
MSASETPTVRDDEATSQNVAHAYPPSKSPAPKLFLVVIIAGSILSLIVHR
LDHPLKTSIVNKVTEFTGVSEKTSGAPAMAVCYSGHLGTFPHVFHQNLDI
IRSVDKNADIFFYVDPKDDYHHERSGEHYVEEHDLGVLQPMFDAMKAKVV
RTFAVDAIKTPESSKCYLREGTDKSHYSHHFMQFYAAKECYKMIQAEEEA
SGKRYQWILRLQPNMRIHVTLPPPDKEPRVHLSGTAIALIPRDMADDFFS
VVQVFEPGSCDPLDHLGGGPCENYSYEHETAECLLIKWLSMADIVPSNGV
FVKRKIIYPTPPENADL*
back to top

mRNA from alignment at tig00004403_pilon:741657..742610-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1519.t1 ID=Gchil1519.t1|Name=Gchil1519.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00004403_pilon:741657..742610- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCGTCAGAAACTCCGACAGTTCGCGATGATGAGGCCACGTCACA
AAATGTGGCTCACGCATATCCGCCTTCAAAGAGTCCAGCTCCGAAGCTGT
TCTTGGTTGTCATAATTGCTGGATCAATCCTTTCCCTTATTGTGCACCGT
TTGGACCATCCCTTGAAGACGTCCATTGTAAACAAGGTCACGGAATTTAC
TGGCGTTTCAGAAAAGACTTCAGGAGCACCAGCAATGGCTGTGTGTTACA
GTGGGCACCTCGGTACTTTTCCTCACGTCTTTCACCAAAACTTAGACATC
ATACGGTCCGTTGATAAGAATGCGGACATATTCTTCTACGTTGACCCCAA
GGATGACTACCACCATGAGCGAAGCGGAGAGCATTATGTGGAGGAACATG
ATTTGGGCGTTCTTCAGCCTATGTTTGATGCGATGAAAGCTAAAGTAGTT
CGCACATTTGCGGTTGATGCCATCAAGACCCCAGAATCGTCCAAATGTTA
TTTGCGTGAAGGAACGGACAAGAGTCATTACAGCCATCACTTCATGCAAT
TCTATGCTGCCAAAGAATGTTACAAGATGATTCAAGCCGAAGAAGAAGCC
TCTGGTAAAAGGTATCAGTGGATACTGCGTCTGCAGCCGAACATGAGGAT
CCACGTTACGCTTCCTCCGCCAGACAAAGAACCGCGAGTCCATTTGAGCG
GCACCGCGATTGCGTTGATTCCAAGAGACATGGCAGATGATTTCTTTTCT
GTTGTGCAAGTATTTGAACCAGGAAGCTGCGACCCTCTCGATCATCTAGG
AGGGGGGCCTTGCGAGAACTACTCGTACGAACACGAGACTGCTGAGTGTT
TGCTTATCAAATGGCTGAGCATGGCCGACATCGTTCCCTCGAACGGTGTC
TTTGTCAAGCGGAAGATCATCTACCCCACGCCGCCTGAAAACGCCGATTT
GTAA
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:741657..742610-

>Gchil1519.t1 ID=Gchil1519.t1|Name=Gchil1519.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=954bp|location=Sequence derived from alignment at tig00004403_pilon:741657..742610- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCGTCAGAAACTCCGACAGTTCGCGATGATGAGGCCACGTCACA
AAATGTGGCTCACGCATATCCGCCTTCAAAGAGTCCAGCTCCGAAGCTGT
TCTTGGTTGTCATAATTGCTGGATCAATCCTTTCCCTTATTGTGCACCGT
TTGGACCATCCCTTGAAGACGTCCATTGTAAACAAGGTCACGGAATTTAC
TGGCGTTTCAGAAAAGACTTCAGGAGCACCAGCAATGGCTGTGTGTTACA
GTGGGCACCTCGGTACTTTTCCTCACGTCTTTCACCAAAACTTAGACATC
ATACGGTCCGTTGATAAGAATGCGGACATATTCTTCTACGTTGACCCCAA
GGATGACTACCACCATGAGCGAAGCGGAGAGCATTATGTGGAGGAACATG
ATTTGGGCGTTCTTCAGCCTATGTTTGATGCGATGAAAGCTAAAGTAGTT
CGCACATTTGCGGTTGATGCCATCAAGACCCCAGAATCGTCCAAATGTTA
TTTGCGTGAAGGAACGGACAAGAGTCATTACAGCCATCACTTCATGCAAT
TCTATGCTGCCAAAGAATGTTACAAGATGATTCAAGCCGAAGAAGAAGCC
TCTGGTAAAAGGTATCAGTGGATACTGCGTCTGCAGCCGAACATGAGGAT
CCACGTTACGCTTCCTCCGCCAGACAAAGAACCGCGAGTCCATTTGAGCG
GCACCGCGATTGCGTTGATTCCAAGAGACATGGCAGATGATTTCTTTTCT
GTTGTGCAAGTATTTGAACCAGGAAGCTGCGACCCTCTCGATCATCTAGG
AGGGGGGCCTTGCGAGAACTACTCGTACGAACACGAGACTGCTGAGTGTT
TGCTTATCAAATGGCTGAGCATGGCCGACATCGTTCCCTCGAACGGTGTC
TTTGTCAAGCGGAAGATCATCTACCCCACGCCGCCTGAAAACGCCGATTT
GTAA
back to top