Gchil1515.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1515.t1
Unique Name	Gchil1515.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	710

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:736013..738142 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1515	Gchil1515	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 736013..738142 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1515.t1.start1	Gchil1515.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 736013..736015 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1515.t1.CDS1	Gchil1515.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 736013..738142 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1515.t1.exon1	Gchil1515.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 736013..738142 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1515.t1.stop1	Gchil1515.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 738140..738142 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1515.t1	Gchil1515.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 736013..738142 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:736013..738142+
coding sequence from alignment at tig00004403_pilon:736013..738142+

mRNA sequence

>Gchil1515.t1 ID=Gchil1515.t1|Name=Gchil1515.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=710bp
MPLASPACSLDMECAAETRVRLDLSALPPRKNRDWVCTNNTRNAFGHNHL
VDMLDVHAANCELQRDDQLPNWRPSASFAYRLRALGAEFRRQVTGAFARR
IGFDNLLCVPSDEACLSVGEQSECTSNAMQSGIKMIVGAVLTDHTSNVFA
RVPILLRADVADEIFNLGIEHECDDQRLVYIAVAIKRRPVETKGSAVLKK
RCLEKLQKEVFLWNLLLSQSQRHDVRRALIIGLHPKRKKAVATGAMPLKP
RAAESKQPSLAVFDKKVWKLAVLAFDDLKHYARRSALDALKWRIDVMDEG
RAWLMNGIKQMSKLSASPSFPHLAHSANPMYALVCTTSDPRLRPNMKSPP
MFDWPWETAKRKLAHDLRELTLVSGISRSAAEEAMAKGIPNDYSHHAVTA
EALGSNSLFTTEVLIKNKPEYKGPVVTPRIIPHNRSNWRLLQEFHQQYPH
RFSKNGQMLPGIEQRSFYVDFELASAEHVRADDSTQLAENADPNLIHKFG
ETFDVYPTAPLVDEAISVALVFMIGCGQVVDGAWKHSVFISDSLDKEGEK
KVILEWLQHMNELTRAQKEPPLVHVWGPEKQLLKQALRRMPQPFIRETEP
LRNFVIMDVHKIVANSCVSIRGSLNNSIKNVAKALEDLGLLDDYAGRVND
GGVGKGPDAIAVALHAVELVQKKKAVSLSEVAGVKDIARYNEHDCRDVAR
IVAYLRKNH*

spliced messenger RNA

>Gchil1515.t1 ID=Gchil1515.t1|Name=Gchil1515.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2130bp|location=Sequence derived from alignment at tig00004403_pilon:736013..738142+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTGGCGTCGCCGGCGTGCTCCTTGGACATGGAGTGCGCCGCAGA
GACTCGTGTCAGACTCGACCTCTCCGCGCTCCCGCCGCGGAAGAACAGGG
ATTGGGTTTGTACGAACAACACGCGGAATGCGTTTGGTCACAATCATCTG
GTGGATATGCTTGATGTGCACGCTGCGAACTGTGAGTTGCAACGCGATGA
TCAGCTCCCGAACTGGCGACCTTCTGCTTCGTTTGCGTACAGACTGCGAG
CGCTTGGCGCCGAGTTTCGCCGACAGGTCACGGGCGCCTTTGCGAGACGC
ATTGGCTTTGATAACCTCCTGTGTGTTCCTTCGGACGAAGCTTGTTTGTC
CGTTGGGGAACAGAGCGAGTGCACTAGTAATGCTATGCAATCGGGAATAA
AGATGATTGTTGGAGCCGTTTTGACCGACCACACGAGCAACGTGTTTGCT
CGGGTTCCTATCTTACTCCGTGCAGATGTAGCGGATGAAATTTTCAATCT
CGGCATCGAACACGAGTGCGATGACCAAAGGCTTGTTTATATCGCCGTAG
CAATCAAACGACGCCCTGTTGAAACAAAGGGATCGGCAGTCTTAAAGAAA
CGGTGCCTCGAGAAGCTGCAGAAGGAAGTTTTCTTGTGGAATTTGTTATT
GTCCCAATCCCAGCGACACGATGTGCGCAGAGCGCTCATCATCGGGCTGC
ACCCCAAGCGGAAGAAGGCTGTTGCCACAGGTGCAATGCCGCTCAAGCCC
CGTGCAGCGGAAAGCAAACAGCCTTCGCTCGCCGTGTTTGACAAGAAAGT
ATGGAAACTTGCCGTTCTTGCGTTCGATGATTTGAAACATTACGCCCGCC
GCAGTGCGCTAGATGCGTTGAAATGGCGCATTGACGTTATGGATGAGGGC
CGCGCGTGGTTGATGAACGGTATCAAACAAATGTCCAAATTGTCCGCCTC
GCCATCTTTCCCGCACTTGGCGCACTCGGCTAATCCAATGTATGCGTTGG
TTTGCACAACGTCCGACCCGCGTTTGCGTCCTAACATGAAGAGCCCCCCA
ATGTTTGACTGGCCCTGGGAGACCGCTAAGAGAAAACTGGCCCACGACCT
TCGCGAGCTCACTCTGGTATCCGGTATCAGCAGAAGCGCTGCCGAAGAAG
CGATGGCAAAAGGAATTCCAAACGACTACTCTCACCACGCCGTGACTGCG
GAAGCTCTTGGTTCCAACTCACTGTTTACAACAGAGGTTTTGATAAAGAA
CAAGCCTGAATACAAAGGCCCTGTCGTTACACCGAGAATCATTCCGCACA
ATCGATCAAACTGGAGGCTTTTGCAGGAATTTCATCAACAGTATCCCCAC
CGTTTTAGTAAGAATGGCCAAATGCTGCCTGGTATCGAACAGAGGTCTTT
TTACGTCGACTTCGAGCTTGCCTCGGCAGAGCACGTGAGGGCTGACGATT
CAACGCAGCTTGCAGAAAATGCGGACCCAAATCTCATACACAAGTTTGGC
GAAACATTTGATGTGTACCCCACGGCGCCGTTGGTTGACGAGGCAATCTC
AGTCGCGCTGGTGTTCATGATTGGATGTGGTCAGGTTGTAGACGGTGCAT
GGAAGCATAGCGTTTTCATATCTGACTCGCTAGACAAAGAGGGGGAAAAG
AAAGTAATCCTGGAATGGTTGCAGCACATGAATGAGCTGACTCGTGCCCA
GAAAGAGCCACCATTGGTGCACGTTTGGGGACCAGAAAAGCAGTTATTGA
AGCAGGCGCTTAGGCGCATGCCCCAGCCGTTCATTCGTGAGACAGAGCCA
CTCCGCAACTTTGTCATTATGGACGTACACAAAATAGTAGCCAATTCTTG
CGTTTCCATCCGCGGAAGTTTGAACAACTCTATCAAAAACGTGGCGAAAG
CGTTGGAGGACCTGGGGTTGTTGGATGACTATGCGGGTAGAGTCAATGAT
GGCGGAGTCGGGAAAGGTCCTGATGCGATAGCTGTCGCGTTACATGCGGT
AGAGCTTGTGCAAAAGAAGAAGGCCGTATCGCTGTCTGAGGTTGCAGGGG
TGAAAGATATAGCACGTTACAACGAGCACGATTGCCGCGACGTGGCACGC
ATTGTGGCATACTTGAGAAAGAATCATTGA

protein sequence of Gchil1515.t1

>Gchil1515.t1 ID=Gchil1515.t1|Name=Gchil1515.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=710bp
MPLASPACSLDMECAAETRVRLDLSALPPRKNRDWVCTNNTRNAFGHNHL
VDMLDVHAANCELQRDDQLPNWRPSASFAYRLRALGAEFRRQVTGAFARR
IGFDNLLCVPSDEACLSVGEQSECTSNAMQSGIKMIVGAVLTDHTSNVFA
RVPILLRADVADEIFNLGIEHECDDQRLVYIAVAIKRRPVETKGSAVLKK
RCLEKLQKEVFLWNLLLSQSQRHDVRRALIIGLHPKRKKAVATGAMPLKP
RAAESKQPSLAVFDKKVWKLAVLAFDDLKHYARRSALDALKWRIDVMDEG
RAWLMNGIKQMSKLSASPSFPHLAHSANPMYALVCTTSDPRLRPNMKSPP
MFDWPWETAKRKLAHDLRELTLVSGISRSAAEEAMAKGIPNDYSHHAVTA
EALGSNSLFTTEVLIKNKPEYKGPVVTPRIIPHNRSNWRLLQEFHQQYPH
RFSKNGQMLPGIEQRSFYVDFELASAEHVRADDSTQLAENADPNLIHKFG
ETFDVYPTAPLVDEAISVALVFMIGCGQVVDGAWKHSVFISDSLDKEGEK
KVILEWLQHMNELTRAQKEPPLVHVWGPEKQLLKQALRRMPQPFIRETEP
LRNFVIMDVHKIVANSCVSIRGSLNNSIKNVAKALEDLGLLDDYAGRVND
GGVGKGPDAIAVALHAVELVQKKKAVSLSEVAGVKDIARYNEHDCRDVAR
IVAYLRKNH*

mRNA from alignment at tig00004403_pilon:736013..738142+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1515.t1 ID=Gchil1515.t1|Name=Gchil1515.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2130bp|location=Sequence derived from alignment at tig00004403_pilon:736013..738142+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCTGGCGTCGCCGGCGTGCTCCTTGGACATGGAGTGCGCCGCAGA
GACTCGTGTCAGACTCGACCTCTCCGCGCTCCCGCCGCGGAAGAACAGGG
ATTGGGTTTGTACGAACAACACGCGGAATGCGTTTGGTCACAATCATCTG
GTGGATATGCTTGATGTGCACGCTGCGAACTGTGAGTTGCAACGCGATGA
TCAGCTCCCGAACTGGCGACCTTCTGCTTCGTTTGCGTACAGACTGCGAG
CGCTTGGCGCCGAGTTTCGCCGACAGGTCACGGGCGCCTTTGCGAGACGC
ATTGGCTTTGATAACCTCCTGTGTGTTCCTTCGGACGAAGCTTGTTTGTC
CGTTGGGGAACAGAGCGAGTGCACTAGTAATGCTATGCAATCGGGAATAA
AGATGATTGTTGGAGCCGTTTTGACCGACCACACGAGCAACGTGTTTGCT
CGGGTTCCTATCTTACTCCGTGCAGATGTAGCGGATGAAATTTTCAATCT
CGGCATCGAACACGAGTGCGATGACCAAAGGCTTGTTTATATCGCCGTAG
CAATCAAACGACGCCCTGTTGAAACAAAGGGATCGGCAGTCTTAAAGAAA
CGGTGCCTCGAGAAGCTGCAGAAGGAAGTTTTCTTGTGGAATTTGTTATT
GTCCCAATCCCAGCGACACGATGTGCGCAGAGCGCTCATCATCGGGCTGC
ACCCCAAGCGGAAGAAGGCTGTTGCCACAGGTGCAATGCCGCTCAAGCCC
CGTGCAGCGGAAAGCAAACAGCCTTCGCTCGCCGTGTTTGACAAGAAAGT
ATGGAAACTTGCCGTTCTTGCGTTCGATGATTTGAAACATTACGCCCGCC
GCAGTGCGCTAGATGCGTTGAAATGGCGCATTGACGTTATGGATGAGGGC
CGCGCGTGGTTGATGAACGGTATCAAACAAATGTCCAAATTGTCCGCCTC
GCCATCTTTCCCGCACTTGGCGCACTCGGCTAATCCAATGTATGCGTTGG
TTTGCACAACGTCCGACCCGCGTTTGCGTCCTAACATGAAGAGCCCCCCA
ATGTTTGACTGGCCCTGGGAGACCGCTAAGAGAAAACTGGCCCACGACCT
TCGCGAGCTCACTCTGGTATCCGGTATCAGCAGAAGCGCTGCCGAAGAAG
CGATGGCAAAAGGAATTCCAAACGACTACTCTCACCACGCCGTGACTGCG
GAAGCTCTTGGTTCCAACTCACTGTTTACAACAGAGGTTTTGATAAAGAA
CAAGCCTGAATACAAAGGCCCTGTCGTTACACCGAGAATCATTCCGCACA
ATCGATCAAACTGGAGGCTTTTGCAGGAATTTCATCAACAGTATCCCCAC
CGTTTTAGTAAGAATGGCCAAATGCTGCCTGGTATCGAACAGAGGTCTTT
TTACGTCGACTTCGAGCTTGCCTCGGCAGAGCACGTGAGGGCTGACGATT
CAACGCAGCTTGCAGAAAATGCGGACCCAAATCTCATACACAAGTTTGGC
GAAACATTTGATGTGTACCCCACGGCGCCGTTGGTTGACGAGGCAATCTC
AGTCGCGCTGGTGTTCATGATTGGATGTGGTCAGGTTGTAGACGGTGCAT
GGAAGCATAGCGTTTTCATATCTGACTCGCTAGACAAAGAGGGGGAAAAG
AAAGTAATCCTGGAATGGTTGCAGCACATGAATGAGCTGACTCGTGCCCA
GAAAGAGCCACCATTGGTGCACGTTTGGGGACCAGAAAAGCAGTTATTGA
AGCAGGCGCTTAGGCGCATGCCCCAGCCGTTCATTCGTGAGACAGAGCCA
CTCCGCAACTTTGTCATTATGGACGTACACAAAATAGTAGCCAATTCTTG
CGTTTCCATCCGCGGAAGTTTGAACAACTCTATCAAAAACGTGGCGAAAG
CGTTGGAGGACCTGGGGTTGTTGGATGACTATGCGGGTAGAGTCAATGAT
GGCGGAGTCGGGAAAGGTCCTGATGCGATAGCTGTCGCGTTACATGCGGT
AGAGCTTGTGCAAAAGAAGAAGGCCGTATCGCTGTCTGAGGTTGCAGGGG
TGAAAGATATAGCACGTTACAACGAGCACGATTGCCGCGACGTGGCACGC
ATTGTGGCATACTTGAGAAAGAATCATTGA

Coding sequence (CDS) from alignment at tig00004403_pilon:736013..738142+

>Gchil1515.t1 ID=Gchil1515.t1|Name=Gchil1515.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2130bp|location=Sequence derived from alignment at tig00004403_pilon:736013..738142+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCTGGCGTCGCCGGCGTGCTCCTTGGACATGGAGTGCGCCGCAGA
GACTCGTGTCAGACTCGACCTCTCCGCGCTCCCGCCGCGGAAGAACAGGG
ATTGGGTTTGTACGAACAACACGCGGAATGCGTTTGGTCACAATCATCTG
GTGGATATGCTTGATGTGCACGCTGCGAACTGTGAGTTGCAACGCGATGA
TCAGCTCCCGAACTGGCGACCTTCTGCTTCGTTTGCGTACAGACTGCGAG
CGCTTGGCGCCGAGTTTCGCCGACAGGTCACGGGCGCCTTTGCGAGACGC
ATTGGCTTTGATAACCTCCTGTGTGTTCCTTCGGACGAAGCTTGTTTGTC
CGTTGGGGAACAGAGCGAGTGCACTAGTAATGCTATGCAATCGGGAATAA
AGATGATTGTTGGAGCCGTTTTGACCGACCACACGAGCAACGTGTTTGCT
CGGGTTCCTATCTTACTCCGTGCAGATGTAGCGGATGAAATTTTCAATCT
CGGCATCGAACACGAGTGCGATGACCAAAGGCTTGTTTATATCGCCGTAG
CAATCAAACGACGCCCTGTTGAAACAAAGGGATCGGCAGTCTTAAAGAAA
CGGTGCCTCGAGAAGCTGCAGAAGGAAGTTTTCTTGTGGAATTTGTTATT
GTCCCAATCCCAGCGACACGATGTGCGCAGAGCGCTCATCATCGGGCTGC
ACCCCAAGCGGAAGAAGGCTGTTGCCACAGGTGCAATGCCGCTCAAGCCC
CGTGCAGCGGAAAGCAAACAGCCTTCGCTCGCCGTGTTTGACAAGAAAGT
ATGGAAACTTGCCGTTCTTGCGTTCGATGATTTGAAACATTACGCCCGCC
GCAGTGCGCTAGATGCGTTGAAATGGCGCATTGACGTTATGGATGAGGGC
CGCGCGTGGTTGATGAACGGTATCAAACAAATGTCCAAATTGTCCGCCTC
GCCATCTTTCCCGCACTTGGCGCACTCGGCTAATCCAATGTATGCGTTGG
TTTGCACAACGTCCGACCCGCGTTTGCGTCCTAACATGAAGAGCCCCCCA
ATGTTTGACTGGCCCTGGGAGACCGCTAAGAGAAAACTGGCCCACGACCT
TCGCGAGCTCACTCTGGTATCCGGTATCAGCAGAAGCGCTGCCGAAGAAG
CGATGGCAAAAGGAATTCCAAACGACTACTCTCACCACGCCGTGACTGCG
GAAGCTCTTGGTTCCAACTCACTGTTTACAACAGAGGTTTTGATAAAGAA
CAAGCCTGAATACAAAGGCCCTGTCGTTACACCGAGAATCATTCCGCACA
ATCGATCAAACTGGAGGCTTTTGCAGGAATTTCATCAACAGTATCCCCAC
CGTTTTAGTAAGAATGGCCAAATGCTGCCTGGTATCGAACAGAGGTCTTT
TTACGTCGACTTCGAGCTTGCCTCGGCAGAGCACGTGAGGGCTGACGATT
CAACGCAGCTTGCAGAAAATGCGGACCCAAATCTCATACACAAGTTTGGC
GAAACATTTGATGTGTACCCCACGGCGCCGTTGGTTGACGAGGCAATCTC
AGTCGCGCTGGTGTTCATGATTGGATGTGGTCAGGTTGTAGACGGTGCAT
GGAAGCATAGCGTTTTCATATCTGACTCGCTAGACAAAGAGGGGGAAAAG
AAAGTAATCCTGGAATGGTTGCAGCACATGAATGAGCTGACTCGTGCCCA
GAAAGAGCCACCATTGGTGCACGTTTGGGGACCAGAAAAGCAGTTATTGA
AGCAGGCGCTTAGGCGCATGCCCCAGCCGTTCATTCGTGAGACAGAGCCA
CTCCGCAACTTTGTCATTATGGACGTACACAAAATAGTAGCCAATTCTTG
CGTTTCCATCCGCGGAAGTTTGAACAACTCTATCAAAAACGTGGCGAAAG
CGTTGGAGGACCTGGGGTTGTTGGATGACTATGCGGGTAGAGTCAATGAT
GGCGGAGTCGGGAAAGGTCCTGATGCGATAGCTGTCGCGTTACATGCGGT
AGAGCTTGTGCAAAAGAAGAAGGCCGTATCGCTGTCTGAGGTTGCAGGGG
TGAAAGATATAGCACGTTACAACGAGCACGATTGCCGCGACGTGGCACGC
ATTGTGGCATACTTGAGAAAGAATCATTGA