Gchil1511.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1511.t1
Unique NameGchil1511.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length711
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:448149..450388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog314271.RB2654_08177
PFAMsGlyco_transf_7C
Max annot lvl28211|Alphaproteobacteria
Evalue6.51e-56
EggNOG OGsCOG1216@1|root,COG1216@2|Bacteria,1MZBS@1224|Proteobacteria,2UEUD@28211|Alphaproteobacteria
DescriptionN-terminal domain of galactosyltransferase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1511Gchil1511Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 448149..450388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1511.t1Gchil1511.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 448149..450388 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1511.t1.stop1Gchil1511.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 448149..448151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1511.t1.CDS1Gchil1511.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 448149..448207 -
Gchil1511.t1.CDS2Gchil1511.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 448315..450388 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1511.t1.exon1Gchil1511.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 448149..448207 -
Gchil1511.t1.exon2Gchil1511.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 448315..450388 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1511.t1.intron1Gchil1511.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 448208..448314 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1511.t1.start1Gchil1511.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 450386..450388 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1511.t1 ID=Gchil1511.t1|Name=Gchil1511.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=711bp
MVMISKSKTGVISSPSTGASPYSEDAPMTARQLVEPLLPQHVSSPRVYAS
RRLYLNAFCLIFILTTVAFFTTPLLLQSFPRFFRPMPSNNPRAAGANSIV
AACTNRHPMLRQALASWLNVRDASEIIIVDWSSQPPLRSVVDQVVSAANS
SIPVRVIRVENEQEWVLSRSYNLAVHHAANEIVFKVDCDYIMHREVIAAH
PLAQSQSAFYTGYYMNSRNENEMHLNGALVVSQTRFWSIGGYDERIQTYG
FDDDDLYERLEASGAKRRNVSFDHYTHISHEDKFRAQEGVKFPRVQIDIN
RLILEKIAQPWNKTFQRSQYEQQQGNPDLLRAKYIPMALKTLVTADEYAE
IRRLALGRRMHDDYGMPWGIIQSMAIRTAETFLFNMKRRKKALGIDEVID
GDVRPRFVLIHVQNGLGNRLRSMGSGISFAERTGREPVIIWEKDEHFNAL
YSDIFDTSNLNFPVMDTFIPKWPLEGNVEFDAAWADIDFYNYMLHEDVGE
FIVDNPDKSIYFKSSAIMNTNITTWDSENEPIRNLPVRKDIISLASPIYS
MGMAEIGGAHIRNRSLDDDITGIDNRGMYYKDDAELLDKWRATTKMDNFV
GTIRQMLNNGTVQKFFVASDTIKVCRKLKDIFGDDRIIYIERECDDRGTE
CEKYAMADLLVLSKVKVLLGSTWSSFTGAAMRLGGPKALLAGTDFGKGPE
ESKVSKQSKS*
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spliced messenger RNA

>Gchil1511.t1 ID=Gchil1511.t1|Name=Gchil1511.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2133bp|location=Sequence derived from alignment at tig00004403_pilon:448149..450388- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCATGATATCGAAGTCGAAGACCGGAGTTATTTCATCCCCTTCCAC
GGGTGCCAGCCCCTATTCAGAAGACGCTCCCATGACAGCCCGCCAGCTCG
TTGAACCTCTTCTCCCACAGCATGTCTCGTCGCCACGCGTCTACGCTAGT
CGCCGTCTATATCTCAACGCTTTCTGTCTGATTTTCATTTTAACAACTGT
CGCCTTCTTCACTACCCCTCTTCTTTTGCAATCATTTCCTCGCTTCTTTC
GCCCTATGCCATCCAACAATCCTCGCGCCGCTGGCGCTAATTCCATCGTT
GCTGCTTGCACCAATCGGCACCCAATGCTGCGCCAGGCTCTCGCTTCTTG
GTTAAATGTACGCGATGCGTCTGAAATAATTATTGTGGATTGGTCCTCCC
AACCGCCCCTTCGCTCTGTGGTCGATCAAGTTGTCTCCGCTGCAAACTCC
TCGATCCCTGTTCGGGTTATTCGTGTAGAAAATGAACAGGAATGGGTTCT
GTCTCGCTCGTATAACCTTGCCGTCCACCATGCCGCGAATGAAATTGTGT
TCAAGGTTGACTGTGATTATATCATGCACCGTGAAGTCATAGCCGCCCAT
CCTCTCGCGCAATCTCAATCGGCCTTTTACACTGGTTATTACATGAACTC
CAGAAATGAGAACGAAATGCATCTTAATGGTGCCCTTGTTGTGTCTCAAA
CTCGTTTTTGGTCTATAGGGGGCTACGATGAGCGAATTCAGACGTATGGG
TTTGACGACGACGATCTCTATGAGCGTCTTGAGGCCTCCGGTGCGAAACG
TCGCAACGTCAGCTTCGACCACTACACCCACATTTCTCATGAAGACAAGT
TTCGTGCCCAGGAGGGTGTCAAGTTTCCGAGAGTGCAGATAGATATCAAC
AGGCTTATTCTGGAAAAGATTGCACAGCCTTGGAACAAGACATTCCAAAG
ATCTCAATATGAACAGCAGCAAGGCAATCCTGACTTGCTCCGGGCGAAGT
ACATCCCTATGGCCCTCAAAACTCTTGTTACAGCTGACGAGTACGCTGAA
ATACGCAGACTTGCCCTCGGTCGCCGTATGCATGATGACTATGGTATGCC
ATGGGGTATCATACAGTCAATGGCTATCCGTACCGCCGAGACTTTCTTAT
TCAACATGAAAAGGCGTAAGAAGGCTTTAGGAATTGATGAAGTTATTGAC
GGCGACGTGAGACCGCGATTTGTCCTCATTCACGTTCAGAATGGACTGGG
TAATCGCTTGCGATCTATGGGAAGTGGCATTTCGTTCGCGGAGAGAACCG
GTCGAGAACCCGTGATCATATGGGAGAAGGACGAGCACTTCAATGCATTG
TATTCTGATATATTTGATACGTCTAACCTCAACTTCCCTGTGATGGACAC
ATTCATTCCAAAATGGCCGTTGGAAGGCAATGTGGAGTTTGATGCGGCTT
GGGCTGACATTGATTTTTATAATTACATGCTTCATGAGGACGTGGGAGAA
TTCATTGTTGACAACCCAGATAAGAGCATATATTTCAAGTCTTCTGCGAT
AATGAACACGAATATTACTACATGGGACTCTGAAAACGAACCGATTAGAA
ACCTTCCCGTTCGAAAAGATATTATATCTCTCGCTAGTCCCATATACAGC
ATGGGTATGGCAGAAATTGGCGGCGCCCACATTAGAAATCGTTCTCTTGA
CGATGATATTACCGGGATCGACAACAGAGGCATGTACTACAAAGATGATG
CAGAATTACTCGACAAATGGCGGGCAACCACGAAGATGGATAATTTCGTC
GGTACCATTCGTCAAATGTTGAATAATGGAACGGTGCAGAAGTTCTTTGT
GGCTTCAGACACCATAAAGGTGTGTCGGAAGCTGAAAGACATATTTGGAG
ACGATCGCATCATCTATATTGAAAGAGAGTGCGACGATCGAGGCACGGAA
TGCGAGAAGTATGCCATGGCTGACCTGCTAGTGTTGTCCAAAGTAAAAGT
ATTGCTTGGGTCAACGTGGTCAAGCTTCACTGGAGCTGCCATGCGGCTAG
GTGGTCCAAAAGCTCTCTTAGCAGGAACTGATTTCGGAAAGGGCCCGGAA
GAGTCGAAAGTCTCAAAGCAATCAAAGTCATGA
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protein sequence of Gchil1511.t1

>Gchil1511.t1 ID=Gchil1511.t1|Name=Gchil1511.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=711bp
MVMISKSKTGVISSPSTGASPYSEDAPMTARQLVEPLLPQHVSSPRVYAS
RRLYLNAFCLIFILTTVAFFTTPLLLQSFPRFFRPMPSNNPRAAGANSIV
AACTNRHPMLRQALASWLNVRDASEIIIVDWSSQPPLRSVVDQVVSAANS
SIPVRVIRVENEQEWVLSRSYNLAVHHAANEIVFKVDCDYIMHREVIAAH
PLAQSQSAFYTGYYMNSRNENEMHLNGALVVSQTRFWSIGGYDERIQTYG
FDDDDLYERLEASGAKRRNVSFDHYTHISHEDKFRAQEGVKFPRVQIDIN
RLILEKIAQPWNKTFQRSQYEQQQGNPDLLRAKYIPMALKTLVTADEYAE
IRRLALGRRMHDDYGMPWGIIQSMAIRTAETFLFNMKRRKKALGIDEVID
GDVRPRFVLIHVQNGLGNRLRSMGSGISFAERTGREPVIIWEKDEHFNAL
YSDIFDTSNLNFPVMDTFIPKWPLEGNVEFDAAWADIDFYNYMLHEDVGE
FIVDNPDKSIYFKSSAIMNTNITTWDSENEPIRNLPVRKDIISLASPIYS
MGMAEIGGAHIRNRSLDDDITGIDNRGMYYKDDAELLDKWRATTKMDNFV
GTIRQMLNNGTVQKFFVASDTIKVCRKLKDIFGDDRIIYIERECDDRGTE
CEKYAMADLLVLSKVKVLLGSTWSSFTGAAMRLGGPKALLAGTDFGKGPE
ESKVSKQSKS*
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mRNA from alignment at tig00004403_pilon:448149..450388-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1511.t1 ID=Gchil1511.t1|Name=Gchil1511.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2240bp|location=Sequence derived from alignment at tig00004403_pilon:448149..450388- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCATGATATCGAAGTCGAAGACCGGAGTTATTTCATCCCCTTCCAC
GGGTGCCAGCCCCTATTCAGAAGACGCTCCCATGACAGCCCGCCAGCTCG
TTGAACCTCTTCTCCCACAGCATGTCTCGTCGCCACGCGTCTACGCTAGT
CGCCGTCTATATCTCAACGCTTTCTGTCTGATTTTCATTTTAACAACTGT
CGCCTTCTTCACTACCCCTCTTCTTTTGCAATCATTTCCTCGCTTCTTTC
GCCCTATGCCATCCAACAATCCTCGCGCCGCTGGCGCTAATTCCATCGTT
GCTGCTTGCACCAATCGGCACCCAATGCTGCGCCAGGCTCTCGCTTCTTG
GTTAAATGTACGCGATGCGTCTGAAATAATTATTGTGGATTGGTCCTCCC
AACCGCCCCTTCGCTCTGTGGTCGATCAAGTTGTCTCCGCTGCAAACTCC
TCGATCCCTGTTCGGGTTATTCGTGTAGAAAATGAACAGGAATGGGTTCT
GTCTCGCTCGTATAACCTTGCCGTCCACCATGCCGCGAATGAAATTGTGT
TCAAGGTTGACTGTGATTATATCATGCACCGTGAAGTCATAGCCGCCCAT
CCTCTCGCGCAATCTCAATCGGCCTTTTACACTGGTTATTACATGAACTC
CAGAAATGAGAACGAAATGCATCTTAATGGTGCCCTTGTTGTGTCTCAAA
CTCGTTTTTGGTCTATAGGGGGCTACGATGAGCGAATTCAGACGTATGGG
TTTGACGACGACGATCTCTATGAGCGTCTTGAGGCCTCCGGTGCGAAACG
TCGCAACGTCAGCTTCGACCACTACACCCACATTTCTCATGAAGACAAGT
TTCGTGCCCAGGAGGGTGTCAAGTTTCCGAGAGTGCAGATAGATATCAAC
AGGCTTATTCTGGAAAAGATTGCACAGCCTTGGAACAAGACATTCCAAAG
ATCTCAATATGAACAGCAGCAAGGCAATCCTGACTTGCTCCGGGCGAAGT
ACATCCCTATGGCCCTCAAAACTCTTGTTACAGCTGACGAGTACGCTGAA
ATACGCAGACTTGCCCTCGGTCGCCGTATGCATGATGACTATGGTATGCC
ATGGGGTATCATACAGTCAATGGCTATCCGTACCGCCGAGACTTTCTTAT
TCAACATGAAAAGGCGTAAGAAGGCTTTAGGAATTGATGAAGTTATTGAC
GGCGACGTGAGACCGCGATTTGTCCTCATTCACGTTCAGAATGGACTGGG
TAATCGCTTGCGATCTATGGGAAGTGGCATTTCGTTCGCGGAGAGAACCG
GTCGAGAACCCGTGATCATATGGGAGAAGGACGAGCACTTCAATGCATTG
TATTCTGATATATTTGATACGTCTAACCTCAACTTCCCTGTGATGGACAC
ATTCATTCCAAAATGGCCGTTGGAAGGCAATGTGGAGTTTGATGCGGCTT
GGGCTGACATTGATTTTTATAATTACATGCTTCATGAGGACGTGGGAGAA
TTCATTGTTGACAACCCAGATAAGAGCATATATTTCAAGTCTTCTGCGAT
AATGAACACGAATATTACTACATGGGACTCTGAAAACGAACCGATTAGAA
ACCTTCCCGTTCGAAAAGATATTATATCTCTCGCTAGTCCCATATACAGC
ATGGGTATGGCAGAAATTGGCGGCGCCCACATTAGAAATCGTTCTCTTGA
CGATGATATTACCGGGATCGACAACAGAGGCATGTACTACAAAGATGATG
CAGAATTACTCGACAAATGGCGGGCAACCACGAAGATGGATAATTTCGTC
GGTACCATTCGTCAAATGTTGAATAATGGAACGGTGCAGAAGTTCTTTGT
GGCTTCAGACACCATAAAGGTGTGTCGGAAGCTGAAAGACATATTTGGAG
ACGATCGCATCATCTATATTGAAAGAGAGTGCGACGATCGAGGCACGGAA
TGCGAGAAGTATGCCATGGCTGACCTGCTAGTGTTGTCCAAAGTAAAAGT
ATTGCTTGGGTCAACGTGGTCAAGCTTCACTGGAGCTGCCATGCGGCTAG
GTGGTCCAAAAGCTCTCTTAGCAGGTACGTTTGGTCACTGACCTTTTTAT
TCAAAACCCATATCTGTGTCGTTATTACAGTTGCTGACTTTTTGCGGTGG
GAAACTTTGCCGTTCCTGTCTTGTTCAACAGGAACTGATTTCGGAAAGGG
CCCGGAAGAGTCGAAAGTCTCAAAGCAATCAAAGTCATGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:448149..450388-

>Gchil1511.t1 ID=Gchil1511.t1|Name=Gchil1511.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2133bp|location=Sequence derived from alignment at tig00004403_pilon:448149..450388- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCATGATATCGAAGTCGAAGACCGGAGTTATTTCATCCCCTTCCAC
GGGTGCCAGCCCCTATTCAGAAGACGCTCCCATGACAGCCCGCCAGCTCG
TTGAACCTCTTCTCCCACAGCATGTCTCGTCGCCACGCGTCTACGCTAGT
CGCCGTCTATATCTCAACGCTTTCTGTCTGATTTTCATTTTAACAACTGT
CGCCTTCTTCACTACCCCTCTTCTTTTGCAATCATTTCCTCGCTTCTTTC
GCCCTATGCCATCCAACAATCCTCGCGCCGCTGGCGCTAATTCCATCGTT
GCTGCTTGCACCAATCGGCACCCAATGCTGCGCCAGGCTCTCGCTTCTTG
GTTAAATGTACGCGATGCGTCTGAAATAATTATTGTGGATTGGTCCTCCC
AACCGCCCCTTCGCTCTGTGGTCGATCAAGTTGTCTCCGCTGCAAACTCC
TCGATCCCTGTTCGGGTTATTCGTGTAGAAAATGAACAGGAATGGGTTCT
GTCTCGCTCGTATAACCTTGCCGTCCACCATGCCGCGAATGAAATTGTGT
TCAAGGTTGACTGTGATTATATCATGCACCGTGAAGTCATAGCCGCCCAT
CCTCTCGCGCAATCTCAATCGGCCTTTTACACTGGTTATTACATGAACTC
CAGAAATGAGAACGAAATGCATCTTAATGGTGCCCTTGTTGTGTCTCAAA
CTCGTTTTTGGTCTATAGGGGGCTACGATGAGCGAATTCAGACGTATGGG
TTTGACGACGACGATCTCTATGAGCGTCTTGAGGCCTCCGGTGCGAAACG
TCGCAACGTCAGCTTCGACCACTACACCCACATTTCTCATGAAGACAAGT
TTCGTGCCCAGGAGGGTGTCAAGTTTCCGAGAGTGCAGATAGATATCAAC
AGGCTTATTCTGGAAAAGATTGCACAGCCTTGGAACAAGACATTCCAAAG
ATCTCAATATGAACAGCAGCAAGGCAATCCTGACTTGCTCCGGGCGAAGT
ACATCCCTATGGCCCTCAAAACTCTTGTTACAGCTGACGAGTACGCTGAA
ATACGCAGACTTGCCCTCGGTCGCCGTATGCATGATGACTATGGTATGCC
ATGGGGTATCATACAGTCAATGGCTATCCGTACCGCCGAGACTTTCTTAT
TCAACATGAAAAGGCGTAAGAAGGCTTTAGGAATTGATGAAGTTATTGAC
GGCGACGTGAGACCGCGATTTGTCCTCATTCACGTTCAGAATGGACTGGG
TAATCGCTTGCGATCTATGGGAAGTGGCATTTCGTTCGCGGAGAGAACCG
GTCGAGAACCCGTGATCATATGGGAGAAGGACGAGCACTTCAATGCATTG
TATTCTGATATATTTGATACGTCTAACCTCAACTTCCCTGTGATGGACAC
ATTCATTCCAAAATGGCCGTTGGAAGGCAATGTGGAGTTTGATGCGGCTT
GGGCTGACATTGATTTTTATAATTACATGCTTCATGAGGACGTGGGAGAA
TTCATTGTTGACAACCCAGATAAGAGCATATATTTCAAGTCTTCTGCGAT
AATGAACACGAATATTACTACATGGGACTCTGAAAACGAACCGATTAGAA
ACCTTCCCGTTCGAAAAGATATTATATCTCTCGCTAGTCCCATATACAGC
ATGGGTATGGCAGAAATTGGCGGCGCCCACATTAGAAATCGTTCTCTTGA
CGATGATATTACCGGGATCGACAACAGAGGCATGTACTACAAAGATGATG
CAGAATTACTCGACAAATGGCGGGCAACCACGAAGATGGATAATTTCGTC
GGTACCATTCGTCAAATGTTGAATAATGGAACGGTGCAGAAGTTCTTTGT
GGCTTCAGACACCATAAAGGTGTGTCGGAAGCTGAAAGACATATTTGGAG
ACGATCGCATCATCTATATTGAAAGAGAGTGCGACGATCGAGGCACGGAA
TGCGAGAAGTATGCCATGGCTGACCTGCTAGTGTTGTCCAAAGTAAAAGT
ATTGCTTGGGTCAACGTGGTCAAGCTTCACTGGAGCTGCCATGCGGCTAG
GTGGTCCAAAAGCTCTCTTAGCAGGAACTGATTTCGGAAAGGGCCCGGAA
GAGTCGAAAGTCTCAAAGCAATCAAAGTCATGA
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