Gchil1510.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1510.t1
Unique NameGchil1510.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length476
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:445274..446802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708474.1
Preferred nameSTK38
PFAMsPkinase,Pkinase_C
Max annot lvl2759|Eukaryota
KEGG koko:K00870,ko:K08286,ko:K08790,ko:K20069
GOsGO:0000003,GO:0000131,GO:0000166,GO:0000287,GO:0000902,GO:0000904,GO:0000920,GO:0001411,GO:0001558,GO:0001932,GO:0001933,GO:0002009,GO:0002165,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0005938,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006469,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007114,GO:0007117,GO:0007118,GO:0007154,GO:0007163,GO:0007165,GO:0007275,GO:0007399,GO:0007423,GO:0007444,GO:0007455,GO:0007469,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008037,GO:0008038,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008360,GO:0008544,GO:0009266,GO:0009267,GO:0009268,GO:0009272,GO:0009408,GO:0009605,GO:0009607,GO:0009628,GO:0009651,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009892,GO:0009913,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010468,GO:0010494,GO:0010556,GO:0010563,GO:0010570,GO:0010605,GO:0010646,GO:0010648,GO:0010769,GO:0010975,GO:0015629,GO:0015630,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016358,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019954,GO:0022008,GO:0022414,GO:0022416,GO:0022603,GO:0022604,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030100,GO:0030154,GO:0030182,GO:0030308,GO:0030424,GO:0030425,GO:0030427,GO:0030428,GO:0030447,GO:0030554,GO:0030855,GO:0030865,GO:0030866,GO:0030950,GO:0030952,GO:0031175,GO:0031323,GO:0031324,GO:0031326,GO:0031344,GO:0031399,GO:0031400,GO:0031435,GO:0031505,GO:0031579,GO:0031667,GO:0031668,GO:0031669,GO:0032065,GO:0032153,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032505,GO:0032507,GO:0032553,GO:0032555,GO:0032559,GO:0032878,GO:0032879,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033554,GO:0033673,GO:0034605,GO:0034613,GO:0035107,GO:0035114,GO:0035120,GO:0035214,GO:0035220,GO:0035239,GO:0035295,GO:0035315,GO:0035316,GO:0035317,GO:0035556,GO:0035639,GO:0035690,GO:0035770,GO:0035838,GO:0036094,GO:0036168,GO:0036170,GO:0036176,GO:0036177,GO:0036178,GO:0036180,GO:0036211,GO:0036244,GO:0036464,GO:0036477,GO:0040007,GO:0040008,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042546,GO:0042594,GO:0042710,GO:0042763,GO:0042764,GO:0042995,GO:0043005,GO:0043086,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043332,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043549,GO:0043900,GO:0043902,GO:0044010,GO:0044011,GO:0044085,GO:0044092,GO:0044182,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044463,GO:0044464,GO:0044764,GO:0045185,GO:0045229,GO:0045595,GO:0045664,GO:0045807,GO:0045859,GO:0045926,GO:0045927,GO:0045936,GO:0046872,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048585,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048800,GO:0048812,GO:0048813,GO:0048814,GO:0048856,GO:0048858,GO:0048869,GO:0050764,GO:0050766,GO:0050767,GO:0050773,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051235,GO:0051239,GO:0051246,GO:0051248,GO:0051252,GO:0051285,GO:0051286,GO:0051301,GO:0051338,GO:0051348,GO:0051641,GO:0051651,GO:0051703,GO:0051704,GO:0051716,GO:0051960,GO:0060099,GO:0060100,GO:0060237,GO:0060255,GO:0060284,GO:0060429,GO:0060562,GO:0060627,GO:0061024,GO:0065007,GO:0065008,GO:0065009,GO:0070451,GO:0070593,GO:0070726,GO:0070727,GO:0070887,GO:0071214,GO:0071467,GO:0071470,GO:0071472,GO:0071496,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0071900,GO:0071901,GO:0071940,GO:0071944,GO:0072686,GO:0080090,GO:0080134,GO:0090033,GO:0090605,GO:0090609,GO:0097159,GO:0097248,GO:0097367,GO:0097447,GO:0097458,GO:0099568,GO:0099738,GO:0104004,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:1900190,GO:1900192,GO:1900231,GO:1900233,GO:1900428,GO:1900430,GO:1900431,GO:1900433,GO:1900440,GO:1900442,GO:1900741,GO:1900743,GO:1901265,GO:1901363,GO:1901564,GO:1902531,GO:1902532,GO:1903338,GO:1903506,GO:1905153,GO:1905155,GO:1990904,GO:2000026,GO:2000099,GO:2000100,GO:2000112,GO:2000247,GO:2000769,GO:2000771,GO:2001141
Evalue5.99e-159
EggNOG OGsKOG0605@1|root,KOG0605@2759|Eukaryota
EC2.7.1.37,2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko01000,ko01001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1510Gchil1510Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 445274..446802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1510.t1Gchil1510.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 445274..446802 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1510.t1.start1Gchil1510.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 445274..445276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1510.t1.CDS1Gchil1510.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 445274..446121 +
Gchil1510.t1.CDS2Gchil1510.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 446223..446802 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1510.t1.exon1Gchil1510.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 445274..446121 +
Gchil1510.t1.exon2Gchil1510.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 446223..446802 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1510.t1.intron1Gchil1510.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 446122..446222 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1510.t1.stop1Gchil1510.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 446800..446802 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1510.t1 ID=Gchil1510.t1|Name=Gchil1510.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=476bp
MADAAPGPALLRNSSKAELAKRKIEILFSTLAQERDAAKKRAHELEEKLA
AMSIRDSEKDRMRKQHAQREMAFLRERRRPMSETDFDMITIIGRGAFGEV
ILVQHKKSGNYYAMKKLRKADMLRKEQVNHAWSERHVLVAANHPFVCQLC
YAFQNKDFLYLVMEFLPGGDLMTLLIERDTLTEDEARFYVAEMVVAIDSI
HKLGFIHRDVKPDNLLIDKDGHLKLSDFGLCKSFNVDMDALPMSNIEASS
SESHSTLNDLSMTERAAAWRRNARKQAFSTVGTPDYISCEVLMKRGYNKE
CDYWSLGVVLYEMLVGYPPFYAEDALKTCRKILNWRETLRFPPEANLSWA
AINLIQSLVCDAKHRLGAQNGIDDFRDHPFFEGIDWDKVSAMKPPFLPEL
RGPTDTRYFEDQKPLPQNGTTQDRQSSRPSYIKEPQAEEFIGFTFKRYNP
TEAPAGRRRGLSASLFENPDASIQE*
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spliced messenger RNA

>Gchil1510.t1 ID=Gchil1510.t1|Name=Gchil1510.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00004403_pilon:445274..446802+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACGCTGCCCCCGGTCCTGCTTTGTTGCGAAACAGCAGCAAGGC
CGAGCTCGCTAAGCGCAAAATCGAAATTCTGTTTTCCACACTTGCTCAAG
AACGCGATGCTGCAAAGAAGCGGGCACACGAGCTGGAAGAAAAGCTTGCT
GCCATGTCCATCAGGGACAGCGAAAAGGACCGCATGCGCAAGCAACACGC
GCAGCGCGAGATGGCCTTTTTGCGAGAGCGTCGTCGCCCAATGTCAGAGA
CAGACTTCGACATGATTACCATCATTGGCCGCGGGGCATTTGGCGAGGTT
ATTTTGGTTCAGCACAAAAAGTCGGGCAACTACTATGCTATGAAGAAACT
CCGGAAGGCTGACATGCTGCGCAAAGAACAGGTAAATCATGCCTGGTCGG
AGCGTCATGTACTTGTTGCTGCTAATCACCCTTTCGTCTGCCAACTGTGT
TATGCGTTCCAAAACAAAGACTTCCTTTATCTTGTCATGGAGTTTCTTCC
AGGCGGTGATCTCATGACTTTGCTTATTGAAAGGGACACTCTTACGGAAG
ATGAAGCTCGCTTTTACGTCGCCGAAATGGTTGTCGCTATTGATTCCATT
CATAAGCTGGGGTTTATCCATAGAGATGTAAAACCTGATAACCTGCTCAT
CGACAAGGACGGCCACCTCAAGCTCAGTGATTTTGGCCTATGCAAGAGCT
TCAACGTAGATATGGATGCCCTACCAATGTCGAATATTGAAGCTTCAAGC
TCAGAATCTCACTCCACGCTCAATGACCTTTCCATGACCGAAAGAGCAGC
AGCTTGGAGACGAAACGCCAGAAAACAAGCCTTCTCCACAGTTGGAACAC
CGGATTATATATCTTGTGAAGTTTTGATGAAGAGAGGCTACAATAAGGAA
TGCGACTACTGGAGTCTTGGGGTGGTTCTCTACGAAATGCTTGTTGGATA
TCCACCATTTTACGCAGAGGATGCTCTCAAAACTTGTCGAAAGATTTTGA
ATTGGCGTGAAACGTTGCGCTTCCCACCAGAGGCGAATCTCAGCTGGGCA
GCCATAAATCTCATTCAGTCTTTGGTTTGTGACGCAAAGCACCGACTAGG
AGCACAAAACGGCATCGATGATTTCCGGGATCACCCGTTTTTTGAAGGAA
TAGACTGGGATAAGGTATCTGCTATGAAGCCCCCTTTTCTTCCGGAGCTA
CGCGGACCAACTGATACTCGCTATTTTGAAGATCAAAAACCATTGCCGCA
GAACGGTACTACGCAGGATAGGCAGTCATCGCGCCCGTCGTATATCAAGG
AACCGCAGGCAGAAGAGTTTATTGGTTTCACGTTCAAGCGGTATAATCCA
ACCGAAGCACCTGCCGGACGACGTCGAGGTCTGTCGGCTTCATTGTTTGA
AAATCCGGATGCATCCATTCAGGAGTAG
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protein sequence of Gchil1510.t1

>Gchil1510.t1 ID=Gchil1510.t1|Name=Gchil1510.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=476bp
MADAAPGPALLRNSSKAELAKRKIEILFSTLAQERDAAKKRAHELEEKLA
AMSIRDSEKDRMRKQHAQREMAFLRERRRPMSETDFDMITIIGRGAFGEV
ILVQHKKSGNYYAMKKLRKADMLRKEQVNHAWSERHVLVAANHPFVCQLC
YAFQNKDFLYLVMEFLPGGDLMTLLIERDTLTEDEARFYVAEMVVAIDSI
HKLGFIHRDVKPDNLLIDKDGHLKLSDFGLCKSFNVDMDALPMSNIEASS
SESHSTLNDLSMTERAAAWRRNARKQAFSTVGTPDYISCEVLMKRGYNKE
CDYWSLGVVLYEMLVGYPPFYAEDALKTCRKILNWRETLRFPPEANLSWA
AINLIQSLVCDAKHRLGAQNGIDDFRDHPFFEGIDWDKVSAMKPPFLPEL
RGPTDTRYFEDQKPLPQNGTTQDRQSSRPSYIKEPQAEEFIGFTFKRYNP
TEAPAGRRRGLSASLFENPDASIQE*
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mRNA from alignment at tig00004403_pilon:445274..446802+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1510.t1 ID=Gchil1510.t1|Name=Gchil1510.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1529bp|location=Sequence derived from alignment at tig00004403_pilon:445274..446802+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGACGCTGCCCCCGGTCCTGCTTTGTTGCGAAACAGCAGCAAGGC
CGAGCTCGCTAAGCGCAAAATCGAAATTCTGTTTTCCACACTTGCTCAAG
AACGCGATGCTGCAAAGAAGCGGGCACACGAGCTGGAAGAAAAGCTTGCT
GCCATGTCCATCAGGGACAGCGAAAAGGACCGCATGCGCAAGCAACACGC
GCAGCGCGAGATGGCCTTTTTGCGAGAGCGTCGTCGCCCAATGTCAGAGA
CAGACTTCGACATGATTACCATCATTGGCCGCGGGGCATTTGGCGAGGTT
ATTTTGGTTCAGCACAAAAAGTCGGGCAACTACTATGCTATGAAGAAACT
CCGGAAGGCTGACATGCTGCGCAAAGAACAGGTAAATCATGCCTGGTCGG
AGCGTCATGTACTTGTTGCTGCTAATCACCCTTTCGTCTGCCAACTGTGT
TATGCGTTCCAAAACAAAGACTTCCTTTATCTTGTCATGGAGTTTCTTCC
AGGCGGTGATCTCATGACTTTGCTTATTGAAAGGGACACTCTTACGGAAG
ATGAAGCTCGCTTTTACGTCGCCGAAATGGTTGTCGCTATTGATTCCATT
CATAAGCTGGGGTTTATCCATAGAGATGTAAAACCTGATAACCTGCTCAT
CGACAAGGACGGCCACCTCAAGCTCAGTGATTTTGGCCTATGCAAGAGCT
TCAACGTAGATATGGATGCCCTACCAATGTCGAATATTGAAGCTTCAAGC
TCAGAATCTCACTCCACGCTCAATGACCTTTCCATGACCGAAAGAGCAGC
AGCTTGGAGACGAAACGCCAGAAAACAAGCCTTCTCCACAGTTGGAACGT
AAGTTTTATTCTGATGCCACATCACAGCGAATGCAATAACCTCACTTTCT
TACAAAGTACTGACTCTTGTTTGAATCTTTCGATTCTATGTCGTTGCAGA
CCGGATTATATATCTTGTGAAGTTTTGATGAAGAGAGGCTACAATAAGGA
ATGCGACTACTGGAGTCTTGGGGTGGTTCTCTACGAAATGCTTGTTGGAT
ATCCACCATTTTACGCAGAGGATGCTCTCAAAACTTGTCGAAAGATTTTG
AATTGGCGTGAAACGTTGCGCTTCCCACCAGAGGCGAATCTCAGCTGGGC
AGCCATAAATCTCATTCAGTCTTTGGTTTGTGACGCAAAGCACCGACTAG
GAGCACAAAACGGCATCGATGATTTCCGGGATCACCCGTTTTTTGAAGGA
ATAGACTGGGATAAGGTATCTGCTATGAAGCCCCCTTTTCTTCCGGAGCT
ACGCGGACCAACTGATACTCGCTATTTTGAAGATCAAAAACCATTGCCGC
AGAACGGTACTACGCAGGATAGGCAGTCATCGCGCCCGTCGTATATCAAG
GAACCGCAGGCAGAAGAGTTTATTGGTTTCACGTTCAAGCGGTATAATCC
AACCGAAGCACCTGCCGGACGACGTCGAGGTCTGTCGGCTTCATTGTTTG
AAAATCCGGATGCATCCATTCAGGAGTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:445274..446802+

>Gchil1510.t1 ID=Gchil1510.t1|Name=Gchil1510.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1428bp|location=Sequence derived from alignment at tig00004403_pilon:445274..446802+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGACGCTGCCCCCGGTCCTGCTTTGTTGCGAAACAGCAGCAAGGC
CGAGCTCGCTAAGCGCAAAATCGAAATTCTGTTTTCCACACTTGCTCAAG
AACGCGATGCTGCAAAGAAGCGGGCACACGAGCTGGAAGAAAAGCTTGCT
GCCATGTCCATCAGGGACAGCGAAAAGGACCGCATGCGCAAGCAACACGC
GCAGCGCGAGATGGCCTTTTTGCGAGAGCGTCGTCGCCCAATGTCAGAGA
CAGACTTCGACATGATTACCATCATTGGCCGCGGGGCATTTGGCGAGGTT
ATTTTGGTTCAGCACAAAAAGTCGGGCAACTACTATGCTATGAAGAAACT
CCGGAAGGCTGACATGCTGCGCAAAGAACAGGTAAATCATGCCTGGTCGG
AGCGTCATGTACTTGTTGCTGCTAATCACCCTTTCGTCTGCCAACTGTGT
TATGCGTTCCAAAACAAAGACTTCCTTTATCTTGTCATGGAGTTTCTTCC
AGGCGGTGATCTCATGACTTTGCTTATTGAAAGGGACACTCTTACGGAAG
ATGAAGCTCGCTTTTACGTCGCCGAAATGGTTGTCGCTATTGATTCCATT
CATAAGCTGGGGTTTATCCATAGAGATGTAAAACCTGATAACCTGCTCAT
CGACAAGGACGGCCACCTCAAGCTCAGTGATTTTGGCCTATGCAAGAGCT
TCAACGTAGATATGGATGCCCTACCAATGTCGAATATTGAAGCTTCAAGC
TCAGAATCTCACTCCACGCTCAATGACCTTTCCATGACCGAAAGAGCAGC
AGCTTGGAGACGAAACGCCAGAAAACAAGCCTTCTCCACAGTTGGAACAC
CGGATTATATATCTTGTGAAGTTTTGATGAAGAGAGGCTACAATAAGGAA
TGCGACTACTGGAGTCTTGGGGTGGTTCTCTACGAAATGCTTGTTGGATA
TCCACCATTTTACGCAGAGGATGCTCTCAAAACTTGTCGAAAGATTTTGA
ATTGGCGTGAAACGTTGCGCTTCCCACCAGAGGCGAATCTCAGCTGGGCA
GCCATAAATCTCATTCAGTCTTTGGTTTGTGACGCAAAGCACCGACTAGG
AGCACAAAACGGCATCGATGATTTCCGGGATCACCCGTTTTTTGAAGGAA
TAGACTGGGATAAGGTATCTGCTATGAAGCCCCCTTTTCTTCCGGAGCTA
CGCGGACCAACTGATACTCGCTATTTTGAAGATCAAAAACCATTGCCGCA
GAACGGTACTACGCAGGATAGGCAGTCATCGCGCCCGTCGTATATCAAGG
AACCGCAGGCAGAAGAGTTTATTGGTTTCACGTTCAAGCGGTATAATCCA
ACCGAAGCACCTGCCGGACGACGTCGAGGTCTGTCGGCTTCATTGTTTGA
AAATCCGGATGCATCCATTCAGGAGTAG
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