Gchil1509.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1509.t1
Unique NameGchil1509.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:443536..444534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1335757.SPICUR_04325
PFAMsCDP-OH_P_transf
Max annot lvl135613|Chromatiales
KEGG rclassRC00002,RC00017,RC02795
KEGG koko:K00995,ko:K08744
KEGG ReactionR01801,R02030
KEGG Pathwayko00564,ko01100,map00564,map01100
Evalue3.72e-38
EggNOG OGsCOG0558@1|root,COG0558@2|Bacteria,1RCZ7@1224|Proteobacteria,1S465@1236|Gammaproteobacteria,1WXKW@135613|Chromatiales
EC2.7.8.41,2.7.8.5
DescriptionBelongs to the CDP-alcohol phosphatidyltransferase class-I family
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1509Gchil1509Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 443536..444534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1509.t1Gchil1509.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 443536..444534 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1509.t1.stop1Gchil1509.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 443536..443538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1509.t1.CDS1Gchil1509.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 443536..443631 -
Gchil1509.t1.CDS2Gchil1509.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 443737..444534 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1509.t1.exon1Gchil1509.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 443536..443631 -
Gchil1509.t1.exon2Gchil1509.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 443737..444534 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1509.t1.intron1Gchil1509.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 443632..443736 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1509.t1.start1Gchil1509.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 444532..444534 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1509.t1 ID=Gchil1509.t1|Name=Gchil1509.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=298bp
MMSCQSRARLFHAKTLEMTPHFMLAVTPAAIPAKRVFVHRKPAFALAPTF
TLRQLSYHSLRSPGPTPPVLRHVRAPLVTARLTKANVPMILTYARVVAVP
VLATVRLSPPFPHQYLLSALIFAFASLTDFLDGYLARRWRVVSELGTFLD
PVADKLMVAVALTLITARLPHPLIVLSTAVIVSREIFVSALREWMAILDK
SAQVKVSIWGKLKTATQMVSLTLLLATVSIHVWFAQIGIVMLLAAATLAI
TSATEYVQSAIRAVHQHTEPRNPACSQSFIIPDRIAYDGYRFRFLFW*
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spliced messenger RNA

>Gchil1509.t1 ID=Gchil1509.t1|Name=Gchil1509.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00004403_pilon:443536..444534- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAGCTGTCAATCCAGAGCTCGGCTCTTCCACGCCAAAACTTTAGA
GATGACACCTCACTTCATGCTTGCCGTAACCCCCGCCGCCATCCCTGCAA
AACGTGTCTTCGTCCATCGCAAGCCTGCCTTCGCTCTCGCTCCCACTTTC
ACTTTACGGCAACTTTCGTACCACAGCCTCCGCTCACCCGGCCCCACACC
TCCAGTCCTGCGTCATGTCCGAGCCCCGCTTGTAACAGCACGTCTCACAA
AGGCCAATGTGCCCATGATCCTGACCTATGCCCGCGTCGTGGCCGTGCCT
GTGCTCGCGACCGTGCGCCTATCACCCCCTTTTCCCCATCAGTATCTTCT
TTCCGCCCTCATTTTCGCCTTTGCATCGCTCACTGACTTTCTCGATGGGT
ATCTCGCACGTCGCTGGCGCGTTGTTTCCGAGCTTGGTACCTTTCTGGAC
CCTGTCGCCGATAAACTCATGGTCGCTGTTGCTTTAACACTCATCACTGC
GCGTCTCCCTCACCCGCTTATCGTCTTATCTACCGCTGTGATTGTATCGA
GGGAAATTTTCGTCAGCGCTCTACGAGAATGGATGGCAATCCTCGACAAG
AGTGCACAAGTCAAAGTTAGTATCTGGGGCAAATTGAAAACCGCAACGCA
AATGGTATCCCTAACTCTTCTACTAGCCACCGTATCTATCCACGTTTGGT
TTGCACAAATAGGGATCGTTATGTTGCTAGCCGCTGCTACTCTGGCCATC
ACGTCAGCAACAGAGTATGTTCAAAGTGCCATTCGTGCAGTCCACCAGCA
TACGGAACCAAGGAACCCCGCTTGCAGCCAGTCATTTATCATCCCCGACC
GCATCGCCTACGATGGTTATCGCTTTCGCTTTTTGTTCTGGTAG
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protein sequence of Gchil1509.t1

>Gchil1509.t1 ID=Gchil1509.t1|Name=Gchil1509.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=298bp
MMSCQSRARLFHAKTLEMTPHFMLAVTPAAIPAKRVFVHRKPAFALAPTF
TLRQLSYHSLRSPGPTPPVLRHVRAPLVTARLTKANVPMILTYARVVAVP
VLATVRLSPPFPHQYLLSALIFAFASLTDFLDGYLARRWRVVSELGTFLD
PVADKLMVAVALTLITARLPHPLIVLSTAVIVSREIFVSALREWMAILDK
SAQVKVSIWGKLKTATQMVSLTLLLATVSIHVWFAQIGIVMLLAAATLAI
TSATEYVQSAIRAVHQHTEPRNPACSQSFIIPDRIAYDGYRFRFLFW*
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mRNA from alignment at tig00004403_pilon:443536..444534-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1509.t1 ID=Gchil1509.t1|Name=Gchil1509.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00004403_pilon:443536..444534- (Gracilaria chilensis NLEC103_M9 male)
ATGATGAGCTGTCAATCCAGAGCTCGGCTCTTCCACGCCAAAACTTTAGA
GATGACACCTCACTTCATGCTTGCCGTAACCCCCGCCGCCATCCCTGCAA
AACGTGTCTTCGTCCATCGCAAGCCTGCCTTCGCTCTCGCTCCCACTTTC
ACTTTACGGCAACTTTCGTACCACAGCCTCCGCTCACCCGGCCCCACACC
TCCAGTCCTGCGTCATGTCCGAGCCCCGCTTGTAACAGCACGTCTCACAA
AGGCCAATGTGCCCATGATCCTGACCTATGCCCGCGTCGTGGCCGTGCCT
GTGCTCGCGACCGTGCGCCTATCACCCCCTTTTCCCCATCAGTATCTTCT
TTCCGCCCTCATTTTCGCCTTTGCATCGCTCACTGACTTTCTCGATGGGT
ATCTCGCACGTCGCTGGCGCGTTGTTTCCGAGCTTGGTACCTTTCTGGAC
CCTGTCGCCGATAAACTCATGGTCGCTGTTGCTTTAACACTCATCACTGC
GCGTCTCCCTCACCCGCTTATCGTCTTATCTACCGCTGTGATTGTATCGA
GGGAAATTTTCGTCAGCGCTCTACGAGAATGGATGGCAATCCTCGACAAG
AGTGCACAAGTCAAAGTTAGTATCTGGGGCAAATTGAAAACCGCAACGCA
AATGGTATCCCTAACTCTTCTACTAGCCACCGTATCTATCCACGTTTGGT
TTGCACAAATAGGGATCGTTATGTTGCTAGCCGCTGCTACTCTGGCCATC
ACGTCAGCAACAGAGTATGTTCAAAGTGCCATTCGTGCAGTCCACCAGGT
ATGATTGCATCCTGCGGTGCTATTTCATCCGCGTCTTTCTGCGTAGCACT
GTCGCATTGTCTTGCAGACCCGTAGCATGAAATTGCCATCTGTCGTTAAC
TAGCATACGGAACCAAGGAACCCCGCTTGCAGCCAGTCATTTATCATCCC
CGACCGCATCGCCTACGATGGTTATCGCTTTCGCTTTTTGTTCTGGTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:443536..444534-

>Gchil1509.t1 ID=Gchil1509.t1|Name=Gchil1509.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00004403_pilon:443536..444534- (Gracilaria chilensis NLEC103_M9 male)
ATGATGAGCTGTCAATCCAGAGCTCGGCTCTTCCACGCCAAAACTTTAGA
GATGACACCTCACTTCATGCTTGCCGTAACCCCCGCCGCCATCCCTGCAA
AACGTGTCTTCGTCCATCGCAAGCCTGCCTTCGCTCTCGCTCCCACTTTC
ACTTTACGGCAACTTTCGTACCACAGCCTCCGCTCACCCGGCCCCACACC
TCCAGTCCTGCGTCATGTCCGAGCCCCGCTTGTAACAGCACGTCTCACAA
AGGCCAATGTGCCCATGATCCTGACCTATGCCCGCGTCGTGGCCGTGCCT
GTGCTCGCGACCGTGCGCCTATCACCCCCTTTTCCCCATCAGTATCTTCT
TTCCGCCCTCATTTTCGCCTTTGCATCGCTCACTGACTTTCTCGATGGGT
ATCTCGCACGTCGCTGGCGCGTTGTTTCCGAGCTTGGTACCTTTCTGGAC
CCTGTCGCCGATAAACTCATGGTCGCTGTTGCTTTAACACTCATCACTGC
GCGTCTCCCTCACCCGCTTATCGTCTTATCTACCGCTGTGATTGTATCGA
GGGAAATTTTCGTCAGCGCTCTACGAGAATGGATGGCAATCCTCGACAAG
AGTGCACAAGTCAAAGTTAGTATCTGGGGCAAATTGAAAACCGCAACGCA
AATGGTATCCCTAACTCTTCTACTAGCCACCGTATCTATCCACGTTTGGT
TTGCACAAATAGGGATCGTTATGTTGCTAGCCGCTGCTACTCTGGCCATC
ACGTCAGCAACAGAGTATGTTCAAAGTGCCATTCGTGCAGTCCACCAGCA
TACGGAACCAAGGAACCCCGCTTGCAGCCAGTCATTTATCATCCCCGACC
GCATCGCCTACGATGGTTATCGCTTTCGCTTTTTGTTCTGGTAG
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