Gchil1507.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1507.t1
Unique NameGchil1507.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:440762..441322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703205.1
PFAMsRieske
Max annot lvl2759|Eukaryota
Evalue4e-68
EggNOG OGsCOG2146@1|root,2S5ES@2759|Eukaryota
DescriptionRieske-like [2Fe-2S] domain
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1507Gchil1507Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 440762..441322 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1507.t1.stop1Gchil1507.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 440762..440764 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1507.t1.CDS1Gchil1507.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 440762..441322 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1507.t1.exon1Gchil1507.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 440762..441322 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1507.t1.start1Gchil1507.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 441320..441322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1507.t1Gchil1507.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 440762..441322 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1507.t1 ID=Gchil1507.t1|Name=Gchil1507.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=187bp
MSAFVPTTSFKGVQLTNSTSNKAVCTRRRAAPARVAPCMKQEAWVPLLET
SEIVPGELKGVVVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDG
VLTCTQHKSSWDLTTGELAGDWCPFPPLIGPLLGKLQGPRPLTVYAVREN
SGQIEALLDVDAKADYEKDYWQGVLDATGKATGGYY*
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spliced messenger RNA

>Gchil1507.t1 ID=Gchil1507.t1|Name=Gchil1507.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00004403_pilon:440762..441322- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCTTCGTCCCCACCACTTCCTTCAAGGGCGTGCAGCTCACAAA
TTCTACTTCCAATAAGGCCGTCTGCACGCGCCGCCGCGCTGCCCCAGCCC
GCGTCGCGCCTTGCATGAAGCAGGAGGCGTGGGTGCCGCTGTTGGAAACC
TCTGAAATCGTGCCGGGCGAGCTCAAGGGCGTGGTTGTTGCTGGTCAACA
GATCCTCGTCTCATGCGACTACGACGGACAAGTGTACGCGTCAGCCAACA
TCTGCCCTCACTTGGGAACTCCTCTCACAGACGGAAGCATTGGTGACGGA
GTGTTGACCTGCACGCAACACAAATCTTCTTGGGATCTCACAACCGGTGA
ATTGGCCGGTGACTGGTGCCCGTTCCCCCCCCTCATCGGGCCACTTCTTG
GAAAGTTGCAAGGCCCTCGCCCGCTCACCGTGTACGCCGTTCGTGAAAAC
TCTGGACAAATCGAGGCGCTCCTTGACGTGGATGCCAAGGCAGACTACGA
GAAAGACTACTGGCAGGGCGTTTTGGACGCTACGGGTAAGGCTACCGGTG
GCTATTATTAG
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protein sequence of Gchil1507.t1

>Gchil1507.t1 ID=Gchil1507.t1|Name=Gchil1507.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=187bp
MSAFVPTTSFKGVQLTNSTSNKAVCTRRRAAPARVAPCMKQEAWVPLLET
SEIVPGELKGVVVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDG
VLTCTQHKSSWDLTTGELAGDWCPFPPLIGPLLGKLQGPRPLTVYAVREN
SGQIEALLDVDAKADYEKDYWQGVLDATGKATGGYY*
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mRNA from alignment at tig00004403_pilon:440762..441322-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1507.t1 ID=Gchil1507.t1|Name=Gchil1507.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00004403_pilon:440762..441322- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGCCTTCGTCCCCACCACTTCCTTCAAGGGCGTGCAGCTCACAAA
TTCTACTTCCAATAAGGCCGTCTGCACGCGCCGCCGCGCTGCCCCAGCCC
GCGTCGCGCCTTGCATGAAGCAGGAGGCGTGGGTGCCGCTGTTGGAAACC
TCTGAAATCGTGCCGGGCGAGCTCAAGGGCGTGGTTGTTGCTGGTCAACA
GATCCTCGTCTCATGCGACTACGACGGACAAGTGTACGCGTCAGCCAACA
TCTGCCCTCACTTGGGAACTCCTCTCACAGACGGAAGCATTGGTGACGGA
GTGTTGACCTGCACGCAACACAAATCTTCTTGGGATCTCACAACCGGTGA
ATTGGCCGGTGACTGGTGCCCGTTCCCCCCCCTCATCGGGCCACTTCTTG
GAAAGTTGCAAGGCCCTCGCCCGCTCACCGTGTACGCCGTTCGTGAAAAC
TCTGGACAAATCGAGGCGCTCCTTGACGTGGATGCCAAGGCAGACTACGA
GAAAGACTACTGGCAGGGCGTTTTGGACGCTACGGGTAAGGCTACCGGTG
GCTATTATTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:440762..441322-

>Gchil1507.t1 ID=Gchil1507.t1|Name=Gchil1507.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=561bp|location=Sequence derived from alignment at tig00004403_pilon:440762..441322- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGCCTTCGTCCCCACCACTTCCTTCAAGGGCGTGCAGCTCACAAA
TTCTACTTCCAATAAGGCCGTCTGCACGCGCCGCCGCGCTGCCCCAGCCC
GCGTCGCGCCTTGCATGAAGCAGGAGGCGTGGGTGCCGCTGTTGGAAACC
TCTGAAATCGTGCCGGGCGAGCTCAAGGGCGTGGTTGTTGCTGGTCAACA
GATCCTCGTCTCATGCGACTACGACGGACAAGTGTACGCGTCAGCCAACA
TCTGCCCTCACTTGGGAACTCCTCTCACAGACGGAAGCATTGGTGACGGA
GTGTTGACCTGCACGCAACACAAATCTTCTTGGGATCTCACAACCGGTGA
ATTGGCCGGTGACTGGTGCCCGTTCCCCCCCCTCATCGGGCCACTTCTTG
GAAAGTTGCAAGGCCCTCGCCCGCTCACCGTGTACGCCGTTCGTGAAAAC
TCTGGACAAATCGAGGCGCTCCTTGACGTGGATGCCAAGGCAGACTACGA
GAAAGACTACTGGCAGGGCGTTTTGGACGCTACGGGTAAGGCTACCGGTG
GCTATTATTAG
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