Gchil1497.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1497.t1
Unique NameGchil1497.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:402870..403430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog756272.Plabr_1641
PFAMsMoCF_biosynth
Max annot lvl203682|Planctomycetes
KEGG rclassRC00002
KEGG koko:K03638,ko:K03831
KEGG ReactionR09726
KEGG Pathwayko00790,ko01100,ko04122,map00790,map01100,map04122
Evalue2.3e-66
EggNOG OGsCOG0521@1|root,COG0521@2|Bacteria,2IYUD@203682|Planctomycetes
EC2.7.7.75
DescriptionMolybdenum cofactor biosynthesis
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1497Gchil1497Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 402870..403430 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1497.t1.start1Gchil1497.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 402870..402872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1497.t1.CDS1Gchil1497.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 402870..403430 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1497.t1.exon1Gchil1497.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 402870..403430 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1497.t1.stop1Gchil1497.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 403428..403430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1497.t1Gchil1497.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 402870..403430 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1497.t1 ID=Gchil1497.t1|Name=Gchil1497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=187bp
MSESSLTTPKIGVLTVSDRAYNGGYEDRGGPAVESYINDHFLSPYDIVPQ
IVPDEFEQIRDAIRSLADQCCLVLTTGGTGPAPRDVTPEATEAVCQKLLP
GFGELMRAVSVQKVPTAILSRQTAGVSGTSLVVNLPGSPKAIAECLDPIL
PAMPHAVRLAGSKQLVRLKPEYHIKGKMCSECNVKH*
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spliced messenger RNA

>Gchil1497.t1 ID=Gchil1497.t1|Name=Gchil1497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00004403_pilon:402870..403430+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGAATCATCTTTGACAACTCCGAAGATAGGTGTGTTGACAGTCTC
CGACCGAGCGTATAATGGTGGATACGAGGACAGGGGGGGCCCAGCCGTTG
AGTCGTACATCAACGATCACTTTCTATCCCCCTATGACATCGTGCCACAA
ATCGTGCCAGACGAATTCGAGCAAATTCGAGACGCGATCAGATCGTTGGC
AGACCAATGTTGCCTGGTTTTAACAACCGGTGGCACGGGACCAGCCCCTA
GAGATGTCACTCCAGAGGCTACAGAAGCTGTTTGTCAAAAGCTTCTTCCC
GGTTTTGGTGAACTCATGAGAGCCGTTTCTGTGCAAAAAGTTCCTACTGC
CATTCTTTCTAGACAAACTGCTGGTGTGTCTGGTACTTCTCTTGTAGTTA
ATCTTCCTGGTAGTCCAAAGGCTATTGCGGAATGTTTGGACCCTATTTTA
CCGGCAATGCCTCATGCCGTGCGTCTTGCGGGGTCCAAACAGCTTGTTCG
TCTCAAGCCCGAGTATCATATCAAGGGCAAAATGTGCTCAGAGTGCAACG
TGAAGCACTAG
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protein sequence of Gchil1497.t1

>Gchil1497.t1 ID=Gchil1497.t1|Name=Gchil1497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=187bp
MSESSLTTPKIGVLTVSDRAYNGGYEDRGGPAVESYINDHFLSPYDIVPQ
IVPDEFEQIRDAIRSLADQCCLVLTTGGTGPAPRDVTPEATEAVCQKLLP
GFGELMRAVSVQKVPTAILSRQTAGVSGTSLVVNLPGSPKAIAECLDPIL
PAMPHAVRLAGSKQLVRLKPEYHIKGKMCSECNVKH*
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mRNA from alignment at tig00004403_pilon:402870..403430+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1497.t1 ID=Gchil1497.t1|Name=Gchil1497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00004403_pilon:402870..403430+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGAATCATCTTTGACAACTCCGAAGATAGGTGTGTTGACAGTCTC
CGACCGAGCGTATAATGGTGGATACGAGGACAGGGGGGGCCCAGCCGTTG
AGTCGTACATCAACGATCACTTTCTATCCCCCTATGACATCGTGCCACAA
ATCGTGCCAGACGAATTCGAGCAAATTCGAGACGCGATCAGATCGTTGGC
AGACCAATGTTGCCTGGTTTTAACAACCGGTGGCACGGGACCAGCCCCTA
GAGATGTCACTCCAGAGGCTACAGAAGCTGTTTGTCAAAAGCTTCTTCCC
GGTTTTGGTGAACTCATGAGAGCCGTTTCTGTGCAAAAAGTTCCTACTGC
CATTCTTTCTAGACAAACTGCTGGTGTGTCTGGTACTTCTCTTGTAGTTA
ATCTTCCTGGTAGTCCAAAGGCTATTGCGGAATGTTTGGACCCTATTTTA
CCGGCAATGCCTCATGCCGTGCGTCTTGCGGGGTCCAAACAGCTTGTTCG
TCTCAAGCCCGAGTATCATATCAAGGGCAAAATGTGCTCAGAGTGCAACG
TGAAGCACTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:402870..403430+

>Gchil1497.t1 ID=Gchil1497.t1|Name=Gchil1497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=561bp|location=Sequence derived from alignment at tig00004403_pilon:402870..403430+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGAATCATCTTTGACAACTCCGAAGATAGGTGTGTTGACAGTCTC
CGACCGAGCGTATAATGGTGGATACGAGGACAGGGGGGGCCCAGCCGTTG
AGTCGTACATCAACGATCACTTTCTATCCCCCTATGACATCGTGCCACAA
ATCGTGCCAGACGAATTCGAGCAAATTCGAGACGCGATCAGATCGTTGGC
AGACCAATGTTGCCTGGTTTTAACAACCGGTGGCACGGGACCAGCCCCTA
GAGATGTCACTCCAGAGGCTACAGAAGCTGTTTGTCAAAAGCTTCTTCCC
GGTTTTGGTGAACTCATGAGAGCCGTTTCTGTGCAAAAAGTTCCTACTGC
CATTCTTTCTAGACAAACTGCTGGTGTGTCTGGTACTTCTCTTGTAGTTA
ATCTTCCTGGTAGTCCAAAGGCTATTGCGGAATGTTTGGACCCTATTTTA
CCGGCAATGCCTCATGCCGTGCGTCTTGCGGGGTCCAAACAGCTTGTTCG
TCTCAAGCCCGAGTATCATATCAAGGGCAAAATGTGCTCAGAGTGCAACG
TGAAGCACTAG
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