Gchil1495.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1495.t1
Unique NameGchil1495.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length403
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:398337..399868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMP193CT
Preferred namecMDH
PFAMsLdh_1_C,Ldh_1_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00031
KEGG koko:K00024,ko:K00025,ko:K00026
KEGG ReactionR00342,R07136
KEGG Pathwayko00020,ko00270,ko00620,ko00630,ko00680,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04964,map00020,map00270,map00620,map00630,map00680,map00710,map00720,map01100,map01110,map01120,map01130,map01200,map04964
KEGG ModuleM00009,M00011,M00012,M00168,M00171,M00173,M00346,M00374,M00620,M00740
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005911,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006107,GO:0006108,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0015980,GO:0016020,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019637,GO:0019674,GO:0019752,GO:0030054,GO:0030060,GO:0031090,GO:0034641,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0046496,GO:0046686,GO:0048046,GO:0050896,GO:0051186,GO:0055044,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072350,GO:0072524,GO:0098588,GO:0098805,GO:1901360,GO:1901564
Evalue2.76e-137
EggNOG OGsCOG0039@1|root,KOG1496@2759|Eukaryota
EC1.1.1.37
Descriptionmalate metabolic process
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1495Gchil1495Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 398337..399868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1495.t1Gchil1495.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 398337..399868 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1495.t1.stop1Gchil1495.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 398337..398339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1495.t1.CDS1Gchil1495.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 398337..399390 -
Gchil1495.t1.CDS2Gchil1495.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 399714..399868 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1495.t1.exon1Gchil1495.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 398337..399390 -
Gchil1495.t1.exon2Gchil1495.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 399714..399868 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1495.t1.intron1Gchil1495.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 399391..399713 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1495.t1.start1Gchil1495.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 399866..399868 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1495.t1 ID=Gchil1495.t1|Name=Gchil1495.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=403bp
MLHTAARSAMRFGASKALRGLATKTDLLPPLKVAVTGAAGQIGYALVMRI
ASGEMLGTDQLLELNLIETEAGMSPLRGVMMELEDGAFPLLSKVTATTDL
RKGFGDASFAMLIGAQPRTKGMERSDLMAANAKIFAEQGKALNESAAENA
KVLVVGNPANTNALIASENAPDMWPEQFIAMTRLDQSRAKALLAEKAGVP
VKDVDRVIIWGNHSATQYPDISHARIGGKWAKSIVTDEKWITEDFIPRVQ
KRGAEVIGARGASSAASAASAALDTIRDLHQGSDEEWLSNGIVSDGSYGI
TKGIWYSVPTVCKGDSHFRRVQRLPIDEFSAKMMRKTEKELLEERDSVRH
LLPGHKAKPVSWNVLESLQESFTAGDMAKVDKIAADLPESIQKSVNEAKA
AA*
back to top

spliced messenger RNA

>Gchil1495.t1 ID=Gchil1495.t1|Name=Gchil1495.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00004403_pilon:398337..399868- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCACACTGCGGCAAGGAGCGCTATGCGCTTCGGCGCTTCGAAAGC
GCTGCGCGGACTTGCTACGAAGACCGATCTTCTCCCTCCTCTCAAAGTTG
CCGTCACAGGAGCTGCCGGACAAATTGGGTATGCTCTTGTTATGCGCATC
GCGAGTGGGGAAATGTTGGGTACAGATCAGCTTTTAGAGTTAAACCTCAT
CGAGACCGAAGCAGGAATGTCCCCTCTACGGGGAGTTATGATGGAACTAG
AAGATGGAGCATTCCCCTTGCTTTCTAAGGTCACTGCGACTACAGATCTG
CGAAAAGGCTTTGGAGATGCCTCATTCGCCATGCTCATCGGAGCCCAGCC
ACGTACCAAAGGCATGGAACGCTCCGACTTGATGGCAGCCAATGCAAAGA
TTTTCGCCGAGCAAGGAAAGGCCCTGAATGAATCTGCGGCGGAAAATGCC
AAAGTGCTTGTGGTCGGTAATCCTGCCAACACGAACGCGCTCATTGCATC
CGAGAATGCTCCGGATATGTGGCCAGAACAATTTATTGCAATGACTCGTC
TCGACCAGTCTCGAGCAAAAGCTTTATTGGCCGAAAAAGCCGGTGTACCT
GTCAAGGACGTTGACCGTGTGATCATCTGGGGAAATCATTCGGCCACCCA
GTATCCAGACATTTCCCACGCGCGCATTGGTGGCAAATGGGCAAAGTCAA
TTGTCACTGATGAGAAGTGGATAACGGAAGACTTCATCCCGCGTGTCCAG
AAACGAGGCGCTGAGGTTATTGGTGCCCGAGGTGCTTCGTCAGCAGCATC
GGCCGCATCAGCTGCTCTTGACACGATCAGAGATTTGCACCAAGGTTCCG
ACGAAGAGTGGCTTTCAAACGGAATCGTATCTGATGGAAGTTATGGAATA
ACCAAAGGCATTTGGTACTCAGTTCCAACCGTTTGCAAGGGAGATTCTCA
CTTCCGACGTGTTCAGCGCCTGCCGATTGATGAGTTCTCTGCGAAGATGA
TGAGGAAGACAGAGAAGGAGCTGCTTGAGGAGCGTGATTCTGTTCGCCAC
TTGCTACCAGGACATAAGGCGAAGCCTGTATCTTGGAACGTTTTGGAATC
GCTGCAGGAGTCTTTTACCGCTGGGGATATGGCGAAGGTGGACAAGATAG
CTGCAGACCTGCCTGAATCCATTCAAAAGAGCGTGAATGAGGCAAAGGCT
GCGGCGTAA
back to top

protein sequence of Gchil1495.t1

>Gchil1495.t1 ID=Gchil1495.t1|Name=Gchil1495.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=403bp
MLHTAARSAMRFGASKALRGLATKTDLLPPLKVAVTGAAGQIGYALVMRI
ASGEMLGTDQLLELNLIETEAGMSPLRGVMMELEDGAFPLLSKVTATTDL
RKGFGDASFAMLIGAQPRTKGMERSDLMAANAKIFAEQGKALNESAAENA
KVLVVGNPANTNALIASENAPDMWPEQFIAMTRLDQSRAKALLAEKAGVP
VKDVDRVIIWGNHSATQYPDISHARIGGKWAKSIVTDEKWITEDFIPRVQ
KRGAEVIGARGASSAASAASAALDTIRDLHQGSDEEWLSNGIVSDGSYGI
TKGIWYSVPTVCKGDSHFRRVQRLPIDEFSAKMMRKTEKELLEERDSVRH
LLPGHKAKPVSWNVLESLQESFTAGDMAKVDKIAADLPESIQKSVNEAKA
AA*
back to top

mRNA from alignment at tig00004403_pilon:398337..399868-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1495.t1 ID=Gchil1495.t1|Name=Gchil1495.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1532bp|location=Sequence derived from alignment at tig00004403_pilon:398337..399868- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCACACTGCGGCAAGGAGCGCTATGCGCTTCGGCGCTTCGAAAGC
GCTGCGCGGACTTGCTACGAAGACCGATCTTCTCCCTCCTCTCAAAGTTG
CCGTCACAGGAGCTGCCGGACAAATTGGGTATGCTCTTGTTATGCGCATC
GCGAGGTATGTTAAAATCCGTTCTCGTTGCAACTGAACGAAGTTTTTCGT
TTTGCTAAAGGAGTATTGCGATCGACAGCGCTGTCGTTGATGATGACCCT
TCCGATTTGTAACGGGGGCATCCCACACCATACTCTTCTTGATTCCATCG
AGTTCATCCTCCATTTTCGATCAGTTTTGAAGAAACAATTGTATTCTTCG
AGCCACCACGATTTTTACTTTTCGTTATGCGTGAGCTGAAGATTATATTG
TTAAAGAGTCAAAATGAACCGTATCTAACATATAATCTCTGTCCCGTTCT
TCTTTTGGTAATGTTTGTGGCCTCGCAGTGGGGAAATGTTGGGTACAGAT
CAGCTTTTAGAGTTAAACCTCATCGAGACCGAAGCAGGAATGTCCCCTCT
ACGGGGAGTTATGATGGAACTAGAAGATGGAGCATTCCCCTTGCTTTCTA
AGGTCACTGCGACTACAGATCTGCGAAAAGGCTTTGGAGATGCCTCATTC
GCCATGCTCATCGGAGCCCAGCCACGTACCAAAGGCATGGAACGCTCCGA
CTTGATGGCAGCCAATGCAAAGATTTTCGCCGAGCAAGGAAAGGCCCTGA
ATGAATCTGCGGCGGAAAATGCCAAAGTGCTTGTGGTCGGTAATCCTGCC
AACACGAACGCGCTCATTGCATCCGAGAATGCTCCGGATATGTGGCCAGA
ACAATTTATTGCAATGACTCGTCTCGACCAGTCTCGAGCAAAAGCTTTAT
TGGCCGAAAAAGCCGGTGTACCTGTCAAGGACGTTGACCGTGTGATCATC
TGGGGAAATCATTCGGCCACCCAGTATCCAGACATTTCCCACGCGCGCAT
TGGTGGCAAATGGGCAAAGTCAATTGTCACTGATGAGAAGTGGATAACGG
AAGACTTCATCCCGCGTGTCCAGAAACGAGGCGCTGAGGTTATTGGTGCC
CGAGGTGCTTCGTCAGCAGCATCGGCCGCATCAGCTGCTCTTGACACGAT
CAGAGATTTGCACCAAGGTTCCGACGAAGAGTGGCTTTCAAACGGAATCG
TATCTGATGGAAGTTATGGAATAACCAAAGGCATTTGGTACTCAGTTCCA
ACCGTTTGCAAGGGAGATTCTCACTTCCGACGTGTTCAGCGCCTGCCGAT
TGATGAGTTCTCTGCGAAGATGATGAGGAAGACAGAGAAGGAGCTGCTTG
AGGAGCGTGATTCTGTTCGCCACTTGCTACCAGGACATAAGGCGAAGCCT
GTATCTTGGAACGTTTTGGAATCGCTGCAGGAGTCTTTTACCGCTGGGGA
TATGGCGAAGGTGGACAAGATAGCTGCAGACCTGCCTGAATCCATTCAAA
AGAGCGTGAATGAGGCAAAGGCTGCGGCGTAA
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:398337..399868-

>Gchil1495.t1 ID=Gchil1495.t1|Name=Gchil1495.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1209bp|location=Sequence derived from alignment at tig00004403_pilon:398337..399868- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCACACTGCGGCAAGGAGCGCTATGCGCTTCGGCGCTTCGAAAGC
GCTGCGCGGACTTGCTACGAAGACCGATCTTCTCCCTCCTCTCAAAGTTG
CCGTCACAGGAGCTGCCGGACAAATTGGGTATGCTCTTGTTATGCGCATC
GCGAGTGGGGAAATGTTGGGTACAGATCAGCTTTTAGAGTTAAACCTCAT
CGAGACCGAAGCAGGAATGTCCCCTCTACGGGGAGTTATGATGGAACTAG
AAGATGGAGCATTCCCCTTGCTTTCTAAGGTCACTGCGACTACAGATCTG
CGAAAAGGCTTTGGAGATGCCTCATTCGCCATGCTCATCGGAGCCCAGCC
ACGTACCAAAGGCATGGAACGCTCCGACTTGATGGCAGCCAATGCAAAGA
TTTTCGCCGAGCAAGGAAAGGCCCTGAATGAATCTGCGGCGGAAAATGCC
AAAGTGCTTGTGGTCGGTAATCCTGCCAACACGAACGCGCTCATTGCATC
CGAGAATGCTCCGGATATGTGGCCAGAACAATTTATTGCAATGACTCGTC
TCGACCAGTCTCGAGCAAAAGCTTTATTGGCCGAAAAAGCCGGTGTACCT
GTCAAGGACGTTGACCGTGTGATCATCTGGGGAAATCATTCGGCCACCCA
GTATCCAGACATTTCCCACGCGCGCATTGGTGGCAAATGGGCAAAGTCAA
TTGTCACTGATGAGAAGTGGATAACGGAAGACTTCATCCCGCGTGTCCAG
AAACGAGGCGCTGAGGTTATTGGTGCCCGAGGTGCTTCGTCAGCAGCATC
GGCCGCATCAGCTGCTCTTGACACGATCAGAGATTTGCACCAAGGTTCCG
ACGAAGAGTGGCTTTCAAACGGAATCGTATCTGATGGAAGTTATGGAATA
ACCAAAGGCATTTGGTACTCAGTTCCAACCGTTTGCAAGGGAGATTCTCA
CTTCCGACGTGTTCAGCGCCTGCCGATTGATGAGTTCTCTGCGAAGATGA
TGAGGAAGACAGAGAAGGAGCTGCTTGAGGAGCGTGATTCTGTTCGCCAC
TTGCTACCAGGACATAAGGCGAAGCCTGTATCTTGGAACGTTTTGGAATC
GCTGCAGGAGTCTTTTACCGCTGGGGATATGGCGAAGGTGGACAAGATAG
CTGCAGACCTGCCTGAATCCATTCAAAAGAGCGTGAATGAGGCAAAGGCT
GCGGCGTAA
back to top