Gchil1492.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1492.t1
Unique NameGchil1492.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length223
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:394566..395234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMP152CT
Preferred nameCYC1
PFAMsCytochrom_C1
Max annot lvl2759|Eukaryota
KEGG koko:K00413
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009055,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0015672,GO:0015980,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016310,GO:0016491,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033762,GO:0034220,GO:0034641,GO:0034654,GO:0042221,GO:0042773,GO:0042775,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043434,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045153,GO:0045155,GO:0045275,GO:0045333,GO:0046034,GO:0046390,GO:0046483,GO:0046907,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0055114,GO:0070013,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1902494,GO:1902600,GO:1990204,GO:1990542
Evalue1.85e-123
EggNOG OGsCOG2857@1|root,KOG3052@2759|Eukaryota
DescriptionCytochrome c1
COG categoryC
BiGG ReactioniMM904.YOR065W,iND750.YOR065W
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1492Gchil1492Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 394566..395234 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1492.t1.start1Gchil1492.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 394566..394568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1492.t1.CDS1Gchil1492.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 394566..395234 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1492.t1.exon1Gchil1492.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 394566..395234 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1492.t1.stop1Gchil1492.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 395232..395234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1492.t1Gchil1492.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 394566..395234 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1492.t1 ID=Gchil1492.t1|Name=Gchil1492.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=223bp
MLASFDAASIRRGYEVYRNVCSSCHSMNRIAFRNLVGVAYTEAEVKEMAE
DIEVDDGPNEEGLMFSRPGRLSDTLPAPYPNEEAARYANNGALPPDLSLI
VKARHGGENYLWALLTGYRDAPEGINVREGLYYNPYFPGGQIAMARALYD
GAVEYEDGTEATTSQMAKDVSTFMAWAAEPEHDQRKKMGMEWVGAFSILF
FFMLYTKRFKWSLYKSRRLEFR*
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spliced messenger RNA

>Gchil1492.t1 ID=Gchil1492.t1|Name=Gchil1492.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00004403_pilon:394566..395234+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCCTCCTTCGACGCCGCCTCCATTCGTCGTGGCTACGAGGTGTA
TCGCAACGTGTGCTCCTCGTGTCACTCCATGAACCGCATCGCCTTCCGAA
ATCTCGTCGGCGTCGCCTACACCGAGGCCGAGGTCAAGGAGATGGCCGAG
GATATCGAGGTCGACGACGGCCCCAACGAAGAGGGACTCATGTTTTCTCG
CCCAGGTCGTCTGTCCGATACTCTGCCTGCGCCCTACCCCAATGAGGAGG
CCGCGCGATACGCCAATAACGGCGCCTTGCCGCCTGATCTCAGTCTTATT
GTCAAGGCGCGCCATGGCGGCGAGAATTACCTCTGGGCGCTGCTCACGGG
CTATCGTGACGCTCCCGAGGGGATCAATGTCCGTGAGGGGTTGTACTATA
ATCCCTACTTCCCCGGCGGCCAGATCGCCATGGCTAGGGCTTTGTACGAC
GGAGCCGTCGAGTACGAGGACGGCACCGAAGCCACAACCAGCCAGATGGC
CAAGGACGTGTCCACCTTCATGGCCTGGGCCGCCGAACCCGAACACGATC
AGAGAAAGAAGATGGGAATGGAGTGGGTGGGCGCCTTCTCCATTCTGTTT
TTCTTTATGTTGTATACCAAGAGATTCAAATGGTCACTTTACAAGAGTCG
ACGACTTGAGTTCCGTTGA
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protein sequence of Gchil1492.t1

>Gchil1492.t1 ID=Gchil1492.t1|Name=Gchil1492.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=223bp
MLASFDAASIRRGYEVYRNVCSSCHSMNRIAFRNLVGVAYTEAEVKEMAE
DIEVDDGPNEEGLMFSRPGRLSDTLPAPYPNEEAARYANNGALPPDLSLI
VKARHGGENYLWALLTGYRDAPEGINVREGLYYNPYFPGGQIAMARALYD
GAVEYEDGTEATTSQMAKDVSTFMAWAAEPEHDQRKKMGMEWVGAFSILF
FFMLYTKRFKWSLYKSRRLEFR*
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mRNA from alignment at tig00004403_pilon:394566..395234+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1492.t1 ID=Gchil1492.t1|Name=Gchil1492.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00004403_pilon:394566..395234+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGCCTCCTTCGACGCCGCCTCCATTCGTCGTGGCTACGAGGTGTA
TCGCAACGTGTGCTCCTCGTGTCACTCCATGAACCGCATCGCCTTCCGAA
ATCTCGTCGGCGTCGCCTACACCGAGGCCGAGGTCAAGGAGATGGCCGAG
GATATCGAGGTCGACGACGGCCCCAACGAAGAGGGACTCATGTTTTCTCG
CCCAGGTCGTCTGTCCGATACTCTGCCTGCGCCCTACCCCAATGAGGAGG
CCGCGCGATACGCCAATAACGGCGCCTTGCCGCCTGATCTCAGTCTTATT
GTCAAGGCGCGCCATGGCGGCGAGAATTACCTCTGGGCGCTGCTCACGGG
CTATCGTGACGCTCCCGAGGGGATCAATGTCCGTGAGGGGTTGTACTATA
ATCCCTACTTCCCCGGCGGCCAGATCGCCATGGCTAGGGCTTTGTACGAC
GGAGCCGTCGAGTACGAGGACGGCACCGAAGCCACAACCAGCCAGATGGC
CAAGGACGTGTCCACCTTCATGGCCTGGGCCGCCGAACCCGAACACGATC
AGAGAAAGAAGATGGGAATGGAGTGGGTGGGCGCCTTCTCCATTCTGTTT
TTCTTTATGTTGTATACCAAGAGATTCAAATGGTCACTTTACAAGAGTCG
ACGACTTGAGTTCCGTTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:394566..395234+

>Gchil1492.t1 ID=Gchil1492.t1|Name=Gchil1492.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=669bp|location=Sequence derived from alignment at tig00004403_pilon:394566..395234+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGCCTCCTTCGACGCCGCCTCCATTCGTCGTGGCTACGAGGTGTA
TCGCAACGTGTGCTCCTCGTGTCACTCCATGAACCGCATCGCCTTCCGAA
ATCTCGTCGGCGTCGCCTACACCGAGGCCGAGGTCAAGGAGATGGCCGAG
GATATCGAGGTCGACGACGGCCCCAACGAAGAGGGACTCATGTTTTCTCG
CCCAGGTCGTCTGTCCGATACTCTGCCTGCGCCCTACCCCAATGAGGAGG
CCGCGCGATACGCCAATAACGGCGCCTTGCCGCCTGATCTCAGTCTTATT
GTCAAGGCGCGCCATGGCGGCGAGAATTACCTCTGGGCGCTGCTCACGGG
CTATCGTGACGCTCCCGAGGGGATCAATGTCCGTGAGGGGTTGTACTATA
ATCCCTACTTCCCCGGCGGCCAGATCGCCATGGCTAGGGCTTTGTACGAC
GGAGCCGTCGAGTACGAGGACGGCACCGAAGCCACAACCAGCCAGATGGC
CAAGGACGTGTCCACCTTCATGGCCTGGGCCGCCGAACCCGAACACGATC
AGAGAAAGAAGATGGGAATGGAGTGGGTGGGCGCCTTCTCCATTCTGTTT
TTCTTTATGTTGTATACCAAGAGATTCAAATGGTCACTTTACAAGAGTCG
ACGACTTGAGTTCCGTTGA
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