Gchil1491.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1491.t1
Unique Name	Gchil1491.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	384

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:391731..392882 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705594.1
Preferred name	tigA
PFAMs	ERp29,Thioredoxin
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09584
KEGG Pathway	ko04141,map04141
GOs	GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006457,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0015035,GO:0015036,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0033554,GO:0034599,GO:0034975,GO:0034976,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051082,GO:0051716,GO:0055114,GO:0070887,GO:0140096
Evalue	5e-13
EggNOG OGs	COG0526@1\|root,KOG0191@2759\|Eukaryota
EC	5.3.4.1
Description	cell redox homeostasis
COG category	CO
BRITE	ko00000,ko00001,ko01000,ko03110,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1491	Gchil1491	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 391731..392882 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1491.t1.stop1	Gchil1491.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 391731..391733 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1491.t1.CDS1	Gchil1491.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 391731..392882 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1491.t1.exon1	Gchil1491.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 391731..392882 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1491.t1.start1	Gchil1491.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 392880..392882 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1491.t1	Gchil1491.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 391731..392882 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:391731..392882-
coding sequence from alignment at tig00004403_pilon:391731..392882-

mRNA sequence

>Gchil1491.t1 ID=Gchil1491.t1|Name=Gchil1491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=384bp
MASSLLYSPSLLAPLLLLLLLLSTLAPIHARYIDALTYETFTASLSSHPL
LLFLTVSWCDHCRALSPEISAIAKAVRDNPAVLVARADADQEPAIAQKLS
VTGFPTILFFPRGFDLHDKISHPAHFSDWRWAELIAEFVNNHTNSSPIIH
FAPRDKFLKWRKKHPYNLGSSASHDPHHDLNQQERQAIYDDGITKMGIRE
PTVLTVHNFDSFVYANPAHRLMVLFYENDDPFLRDILIQWRQASSAFTGA
DNVTIAFADVTADHSLIRRFQLPGTPSCLYFSSCDEADMPRCKTPISCDD
DFEDTENIIQFISDRVMYEIGIEPQDDEKEATTYTVSEEEYQEMKANGVL
FANEEEHAEQIRQIYEQRRKSKQQSTESAKDEL*

spliced messenger RNA

>Gchil1491.t1 ID=Gchil1491.t1|Name=Gchil1491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00004403_pilon:391731..392882- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCATCTCTCCTCTATTCCCCCTCGCTGCTCGCCCCTCTTCTTCT
TCTTCTTCTTCTTCTCTCCACACTCGCTCCCATTCATGCCCGCTATATTG
ACGCCCTAACCTATGAAACTTTCACCGCATCCCTATCTTCCCACCCGCTC
CTGCTCTTCCTCACCGTCTCCTGGTGCGACCACTGCCGCGCCCTCTCACC
CGAAATCAGTGCCATCGCGAAAGCCGTGCGAGACAATCCCGCCGTGCTCG
TGGCGCGCGCCGATGCCGATCAGGAGCCGGCCATAGCCCAAAAGCTCAGT
GTCACCGGCTTCCCCACCATCCTATTCTTCCCGCGCGGTTTCGATTTGCA
CGACAAAATCTCACACCCTGCACACTTTTCGGACTGGCGATGGGCGGAGC
TCATAGCCGAATTTGTCAATAATCACACCAACTCCTCCCCCATCATTCAC
TTCGCTCCGCGTGATAAATTTCTCAAGTGGCGAAAAAAGCATCCGTATAA
CCTCGGCTCGAGCGCTTCTCATGACCCGCACCACGATCTCAATCAGCAAG
AGCGTCAAGCTATTTATGACGATGGCATCACCAAAATGGGCATTCGCGAA
CCAACTGTCTTAACAGTCCACAATTTTGATTCGTTCGTGTACGCAAACCC
CGCCCATCGCCTCATGGTATTGTTCTACGAAAACGACGACCCTTTTCTAA
GGGACATTCTCATCCAGTGGCGACAGGCTAGCAGCGCGTTTACCGGCGCT
GATAATGTCACCATTGCCTTTGCAGACGTGACGGCCGATCACTCTTTGAT
TCGTCGCTTTCAACTGCCTGGCACTCCGTCCTGCCTGTATTTCTCGTCTT
GCGATGAAGCTGATATGCCGCGCTGCAAAACCCCTATTTCATGTGATGAC
GACTTTGAGGACACCGAAAATATCATCCAGTTCATTTCTGACCGTGTCAT
GTATGAGATTGGAATTGAACCGCAGGACGATGAGAAAGAAGCTACTACAT
ACACGGTATCCGAAGAAGAATACCAGGAGATGAAAGCGAATGGTGTCTTG
TTTGCCAATGAGGAAGAGCATGCCGAGCAGATTAGACAGATTTACGAACA
GCGACGCAAGAGCAAACAACAGTCTACAGAGAGTGCCAAAGATGAATTGT
GA

protein sequence of Gchil1491.t1

>Gchil1491.t1 ID=Gchil1491.t1|Name=Gchil1491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=384bp
MASSLLYSPSLLAPLLLLLLLLSTLAPIHARYIDALTYETFTASLSSHPL
LLFLTVSWCDHCRALSPEISAIAKAVRDNPAVLVARADADQEPAIAQKLS
VTGFPTILFFPRGFDLHDKISHPAHFSDWRWAELIAEFVNNHTNSSPIIH
FAPRDKFLKWRKKHPYNLGSSASHDPHHDLNQQERQAIYDDGITKMGIRE
PTVLTVHNFDSFVYANPAHRLMVLFYENDDPFLRDILIQWRQASSAFTGA
DNVTIAFADVTADHSLIRRFQLPGTPSCLYFSSCDEADMPRCKTPISCDD
DFEDTENIIQFISDRVMYEIGIEPQDDEKEATTYTVSEEEYQEMKANGVL
FANEEEHAEQIRQIYEQRRKSKQQSTESAKDEL*

mRNA from alignment at tig00004403_pilon:391731..392882-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1491.t1 ID=Gchil1491.t1|Name=Gchil1491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00004403_pilon:391731..392882- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTCATCTCTCCTCTATTCCCCCTCGCTGCTCGCCCCTCTTCTTCT
TCTTCTTCTTCTTCTCTCCACACTCGCTCCCATTCATGCCCGCTATATTG
ACGCCCTAACCTATGAAACTTTCACCGCATCCCTATCTTCCCACCCGCTC
CTGCTCTTCCTCACCGTCTCCTGGTGCGACCACTGCCGCGCCCTCTCACC
CGAAATCAGTGCCATCGCGAAAGCCGTGCGAGACAATCCCGCCGTGCTCG
TGGCGCGCGCCGATGCCGATCAGGAGCCGGCCATAGCCCAAAAGCTCAGT
GTCACCGGCTTCCCCACCATCCTATTCTTCCCGCGCGGTTTCGATTTGCA
CGACAAAATCTCACACCCTGCACACTTTTCGGACTGGCGATGGGCGGAGC
TCATAGCCGAATTTGTCAATAATCACACCAACTCCTCCCCCATCATTCAC
TTCGCTCCGCGTGATAAATTTCTCAAGTGGCGAAAAAAGCATCCGTATAA
CCTCGGCTCGAGCGCTTCTCATGACCCGCACCACGATCTCAATCAGCAAG
AGCGTCAAGCTATTTATGACGATGGCATCACCAAAATGGGCATTCGCGAA
CCAACTGTCTTAACAGTCCACAATTTTGATTCGTTCGTGTACGCAAACCC
CGCCCATCGCCTCATGGTATTGTTCTACGAAAACGACGACCCTTTTCTAA
GGGACATTCTCATCCAGTGGCGACAGGCTAGCAGCGCGTTTACCGGCGCT
GATAATGTCACCATTGCCTTTGCAGACGTGACGGCCGATCACTCTTTGAT
TCGTCGCTTTCAACTGCCTGGCACTCCGTCCTGCCTGTATTTCTCGTCTT
GCGATGAAGCTGATATGCCGCGCTGCAAAACCCCTATTTCATGTGATGAC
GACTTTGAGGACACCGAAAATATCATCCAGTTCATTTCTGACCGTGTCAT
GTATGAGATTGGAATTGAACCGCAGGACGATGAGAAAGAAGCTACTACAT
ACACGGTATCCGAAGAAGAATACCAGGAGATGAAAGCGAATGGTGTCTTG
TTTGCCAATGAGGAAGAGCATGCCGAGCAGATTAGACAGATTTACGAACA
GCGACGCAAGAGCAAACAACAGTCTACAGAGAGTGCCAAAGATGAATTGT
GA

Coding sequence (CDS) from alignment at tig00004403_pilon:391731..392882-

>Gchil1491.t1 ID=Gchil1491.t1|Name=Gchil1491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1152bp|location=Sequence derived from alignment at tig00004403_pilon:391731..392882- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTCATCTCTCCTCTATTCCCCCTCGCTGCTCGCCCCTCTTCTTCT
TCTTCTTCTTCTTCTCTCCACACTCGCTCCCATTCATGCCCGCTATATTG
ACGCCCTAACCTATGAAACTTTCACCGCATCCCTATCTTCCCACCCGCTC
CTGCTCTTCCTCACCGTCTCCTGGTGCGACCACTGCCGCGCCCTCTCACC
CGAAATCAGTGCCATCGCGAAAGCCGTGCGAGACAATCCCGCCGTGCTCG
TGGCGCGCGCCGATGCCGATCAGGAGCCGGCCATAGCCCAAAAGCTCAGT
GTCACCGGCTTCCCCACCATCCTATTCTTCCCGCGCGGTTTCGATTTGCA
CGACAAAATCTCACACCCTGCACACTTTTCGGACTGGCGATGGGCGGAGC
TCATAGCCGAATTTGTCAATAATCACACCAACTCCTCCCCCATCATTCAC
TTCGCTCCGCGTGATAAATTTCTCAAGTGGCGAAAAAAGCATCCGTATAA
CCTCGGCTCGAGCGCTTCTCATGACCCGCACCACGATCTCAATCAGCAAG
AGCGTCAAGCTATTTATGACGATGGCATCACCAAAATGGGCATTCGCGAA
CCAACTGTCTTAACAGTCCACAATTTTGATTCGTTCGTGTACGCAAACCC
CGCCCATCGCCTCATGGTATTGTTCTACGAAAACGACGACCCTTTTCTAA
GGGACATTCTCATCCAGTGGCGACAGGCTAGCAGCGCGTTTACCGGCGCT
GATAATGTCACCATTGCCTTTGCAGACGTGACGGCCGATCACTCTTTGAT
TCGTCGCTTTCAACTGCCTGGCACTCCGTCCTGCCTGTATTTCTCGTCTT
GCGATGAAGCTGATATGCCGCGCTGCAAAACCCCTATTTCATGTGATGAC
GACTTTGAGGACACCGAAAATATCATCCAGTTCATTTCTGACCGTGTCAT
GTATGAGATTGGAATTGAACCGCAGGACGATGAGAAAGAAGCTACTACAT
ACACGGTATCCGAAGAAGAATACCAGGAGATGAAAGCGAATGGTGTCTTG
TTTGCCAATGAGGAAGAGCATGCCGAGCAGATTAGACAGATTTACGAACA
GCGACGCAAGAGCAAACAACAGTCTACAGAGAGTGCCAAAGATGAATTGT
GA