Gchil1487.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1487.t1
Unique NameGchil1487.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length419
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:322905..324161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1487Gchil1487Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 322905..324161 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1487.t1.start1Gchil1487.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 322905..322907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1487.t1.CDS1Gchil1487.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 322905..324161 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1487.t1.exon1Gchil1487.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 322905..324161 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1487.t1.stop1Gchil1487.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 324159..324161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1487.t1Gchil1487.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 322905..324161 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1487.t1 ID=Gchil1487.t1|Name=Gchil1487.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=419bp
MAPVDELRAAAPQSDPDDDPYQVYTLRRPHERASSIVPQLPKQPEMADTR
LRYRRIPAAARSGSFGSLGNHFPARFHFPARCSLLDSLTSDDESVSLAAA
AAATKPRPKIVRKRRRRARDPKRRFPSPDTVLHDFAISDDDSVAESSNVS
PDPLNQSTSAKPPVLPNSCHKAPSHAANLRHSHNPDPPSLSSSSASSPSP
SPRPSCSADPIPRVATAAAAAIAPDGARVRASKSADAAYISRHVAPTNAH
PVHEPPRNVVPTVLDPARTSILPVTIVAPQAMSEEQRQKFVLVPEEPVRV
TRGGRTDAAAKKKKAQRKKATKTAAKKESKRKQVAPSAPSAPSAPSAPRR
PPNVVAERRAERDELAGLRDKELSVSFAQPRYTAEQAAAAKPLNAVQRLL
HMLAFVRLGGVRRSSHRR*
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spliced messenger RNA

>Gchil1487.t1 ID=Gchil1487.t1|Name=Gchil1487.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1257bp|location=Sequence derived from alignment at tig00004403_pilon:322905..324161+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCTGTCGACGAGCTGCGCGCAGCCGCGCCGCAGTCCGACCCGGA
TGACGATCCGTATCAGGTGTACACGCTGCGTCGTCCGCACGAGCGCGCCT
CCTCCATCGTGCCGCAGCTGCCCAAACAGCCGGAGATGGCCGACACTCGT
CTACGCTATCGTCGTATTCCCGCCGCCGCCCGCTCCGGCTCCTTCGGCTC
ACTTGGCAATCACTTTCCCGCCCGTTTTCACTTCCCTGCGCGCTGTTCGC
TGCTCGACTCGCTCACCAGCGACGACGAGTCCGTGTCGCTTgccgccgcc
gccgctgccaccaagccgcgccCCAAGATTGTTCGCAAGCGCCGCCGTCG
CGCACGCGACCCCAAGCGCCGCTTTCCGTCCCCCGATACCGTCCTGCATG
ACTTTGCTATCTCGGACGACGACAGCGTTGCCGAGTCCTCAAACGTTTCG
CCCGACCCCCTTAACCAATCCACGTCCGCCAAGCCTCCTGTGCTGCCAAA
CAGCTGCCACAAAGCCCCATCGCACGCCGCCAACCTGCGTCACAGTCACA
ACCCCGACCCACCCTCGCTCTCGTCTTCATCCGCATCCTCACCCTCACCC
TCACCCCGACCCTCATGCTCCGCCGATCCCATTCCGCGAGTcgccaccgc
cgccgccgccgccatcgcgccagacggcgcgcgcGTGCGAGCATCAAAGT
CCGCTGACGCCGCCTACATATCGCGCCACGTCGCGCCCACCAACGCCCAC
CCCGTACACGAGCCACCACGCAACGTGGTGCCCACCGTGCTGGACCCCGC
GCGCACGTCAATTCTGCCCGTCACCATCGTCGCCCCGCAAGCCATGTCCG
AGGAGCAGCGCCAAAAGTTCGTGCTCGTACCGGAGGAGCCCGTCAGAGTC
ACCAGAGGCGGTCGCACTGACGCCGCCGCCAAGAAAAAGAAGGCGCAGCG
AAAGAAAGCGACCAAAACCGCCGCCAAGAAGGAGTCCAAGCGCAAACAGG
Tcgcgcccagcgcgcccagcgcgcccagcgcgcccagcgcgcccaggcgc
ccGCCCAACGTGGTGGCGGAGCGACGAGCGGAAAGGGACGAATTGGCCGG
CCTTAGGGACAAGGAACTTAGTGTGTCATTCGCGCAACCGAGGTACACGG
CCGAGCAGGCGGCCGCTGCCAAACCGCTCAACGCCGTGCAGAGGCTGTTG
CACATGCTGGCCTTTGTGCGGTTGGGAGGCGTGCGACGCTCCTCCCACCG
TCGATGA
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protein sequence of Gchil1487.t1

>Gchil1487.t1 ID=Gchil1487.t1|Name=Gchil1487.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=419bp
MAPVDELRAAAPQSDPDDDPYQVYTLRRPHERASSIVPQLPKQPEMADTR
LRYRRIPAAARSGSFGSLGNHFPARFHFPARCSLLDSLTSDDESVSLAAA
AAATKPRPKIVRKRRRRARDPKRRFPSPDTVLHDFAISDDDSVAESSNVS
PDPLNQSTSAKPPVLPNSCHKAPSHAANLRHSHNPDPPSLSSSSASSPSP
SPRPSCSADPIPRVATAAAAAIAPDGARVRASKSADAAYISRHVAPTNAH
PVHEPPRNVVPTVLDPARTSILPVTIVAPQAMSEEQRQKFVLVPEEPVRV
TRGGRTDAAAKKKKAQRKKATKTAAKKESKRKQVAPSAPSAPSAPSAPRR
PPNVVAERRAERDELAGLRDKELSVSFAQPRYTAEQAAAAKPLNAVQRLL
HMLAFVRLGGVRRSSHRR*
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mRNA from alignment at tig00004403_pilon:322905..324161+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1487.t1 ID=Gchil1487.t1|Name=Gchil1487.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1257bp|location=Sequence derived from alignment at tig00004403_pilon:322905..324161+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCTGTCGACGAGCTGCGCGCAGCCGCGCCGCAGTCCGACCCGGA
TGACGATCCGTATCAGGTGTACACGCTGCGTCGTCCGCACGAGCGCGCCT
CCTCCATCGTGCCGCAGCTGCCCAAACAGCCGGAGATGGCCGACACTCGT
CTACGCTATCGTCGTATTCCCGCCGCCGCCCGCTCCGGCTCCTTCGGCTC
ACTTGGCAATCACTTTCCCGCCCGTTTTCACTTCCCTGCGCGCTGTTCGC
TGCTCGACTCGCTCACCAGCGACGACGAGTCCGTGTCGCTTgccgccgcc
gccgctgccaccaagccgcgccCCAAGATTGTTCGCAAGCGCCGCCGTCG
CGCACGCGACCCCAAGCGCCGCTTTCCGTCCCCCGATACCGTCCTGCATG
ACTTTGCTATCTCGGACGACGACAGCGTTGCCGAGTCCTCAAACGTTTCG
CCCGACCCCCTTAACCAATCCACGTCCGCCAAGCCTCCTGTGCTGCCAAA
CAGCTGCCACAAAGCCCCATCGCACGCCGCCAACCTGCGTCACAGTCACA
ACCCCGACCCACCCTCGCTCTCGTCTTCATCCGCATCCTCACCCTCACCC
TCACCCCGACCCTCATGCTCCGCCGATCCCATTCCGCGAGTcgccaccgc
cgccgccgccgccatcgcgccagacggcgcgcgcGTGCGAGCATCAAAGT
CCGCTGACGCCGCCTACATATCGCGCCACGTCGCGCCCACCAACGCCCAC
CCCGTACACGAGCCACCACGCAACGTGGTGCCCACCGTGCTGGACCCCGC
GCGCACGTCAATTCTGCCCGTCACCATCGTCGCCCCGCAAGCCATGTCCG
AGGAGCAGCGCCAAAAGTTCGTGCTCGTACCGGAGGAGCCCGTCAGAGTC
ACCAGAGGCGGTCGCACTGACGCCGCCGCCAAGAAAAAGAAGGCGCAGCG
AAAGAAAGCGACCAAAACCGCCGCCAAGAAGGAGTCCAAGCGCAAACAGG
Tcgcgcccagcgcgcccagcgcgcccagcgcgcccagcgcgcccaggcgc
ccGCCCAACGTGGTGGCGGAGCGACGAGCGGAAAGGGACGAATTGGCCGG
CCTTAGGGACAAGGAACTTAGTGTGTCATTCGCGCAACCGAGGTACACGG
CCGAGCAGGCGGCCGCTGCCAAACCGCTCAACGCCGTGCAGAGGCTGTTG
CACATGCTGGCCTTTGTGCGGTTGGGAGGCGTGCGACGCTCCTCCCACCG
TCGATGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:322905..324161+

>Gchil1487.t1 ID=Gchil1487.t1|Name=Gchil1487.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1257bp|location=Sequence derived from alignment at tig00004403_pilon:322905..324161+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCTGTCGACGAGCTGCGCGCAGCCGCGCCGCAGTCCGACCCGGA
TGACGATCCGTATCAGGTGTACACGCTGCGTCGTCCGCACGAGCGCGCCT
CCTCCATCGTGCCGCAGCTGCCCAAACAGCCGGAGATGGCCGACACTCGT
CTACGCTATCGTCGTATTCCCGCCGCCGCCCGCTCCGGCTCCTTCGGCTC
ACTTGGCAATCACTTTCCCGCCCGTTTTCACTTCCCTGCGCGCTGTTCGC
TGCTCGACTCGCTCACCAGCGACGACGAGTCCGTGTCGCTTgccgccgcc
gccgctgccaccaagccgcgccCCAAGATTGTTCGCAAGCGCCGCCGTCG
CGCACGCGACCCCAAGCGCCGCTTTCCGTCCCCCGATACCGTCCTGCATG
ACTTTGCTATCTCGGACGACGACAGCGTTGCCGAGTCCTCAAACGTTTCG
CCCGACCCCCTTAACCAATCCACGTCCGCCAAGCCTCCTGTGCTGCCAAA
CAGCTGCCACAAAGCCCCATCGCACGCCGCCAACCTGCGTCACAGTCACA
ACCCCGACCCACCCTCGCTCTCGTCTTCATCCGCATCCTCACCCTCACCC
TCACCCCGACCCTCATGCTCCGCCGATCCCATTCCGCGAGTcgccaccgc
cgccgccgccgccatcgcgccagacggcgcgcgcGTGCGAGCATCAAAGT
CCGCTGACGCCGCCTACATATCGCGCCACGTCGCGCCCACCAACGCCCAC
CCCGTACACGAGCCACCACGCAACGTGGTGCCCACCGTGCTGGACCCCGC
GCGCACGTCAATTCTGCCCGTCACCATCGTCGCCCCGCAAGCCATGTCCG
AGGAGCAGCGCCAAAAGTTCGTGCTCGTACCGGAGGAGCCCGTCAGAGTC
ACCAGAGGCGGTCGCACTGACGCCGCCGCCAAGAAAAAGAAGGCGCAGCG
AAAGAAAGCGACCAAAACCGCCGCCAAGAAGGAGTCCAAGCGCAAACAGG
Tcgcgcccagcgcgcccagcgcgcccagcgcgcccagcgcgcccaggcgc
ccGCCCAACGTGGTGGCGGAGCGACGAGCGGAAAGGGACGAATTGGCCGG
CCTTAGGGACAAGGAACTTAGTGTGTCATTCGCGCAACCGAGGTACACGG
CCGAGCAGGCGGCCGCTGCCAAACCGCTCAACGCCGTGCAGAGGCTGTTG
CACATGCTGGCCTTTGTGCGGTTGGGAGGCGTGCGACGCTCCTCCCACCG
TCGATGA
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