Gchil1485.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1485.t1
Unique Name	Gchil1485.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	685

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:291952..294006 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	121225.PHUM580010-PA
Preferred name	ZNHIT6
PFAMs	zf-HIT
Max annot lvl	33208\|Metazoa
GOs	GO:0000491,GO:0000492,GO:0000902,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0006403,GO:0007275,GO:0007399,GO:0008134,GO:0008150,GO:0009653,GO:0009987,GO:0016043,GO:0019899,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0034622,GO:0042802,GO:0043933,GO:0044085,GO:0048254,GO:0048468,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0051117,GO:0051179,GO:0051259,GO:0065003,GO:0070761,GO:0071826,GO:0071840,GO:0120036,GO:0120039,GO:1990904
Evalue	3.61e-21
EggNOG OGs	KOG2858@1\|root,KOG2858@2759\|Eukaryota,39UNB@33154\|Opisthokonta,3B9SC@33208\|Metazoa,3D2FP@33213\|Bilateria,41YSN@6656\|Arthropoda,3SM3P@50557\|Insecta,3EBTN@33342\|Paraneoptera
Description	Box C D snoRNA protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1485	Gchil1485	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 291952..294006 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1485.t1.start1	Gchil1485.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 291952..291954 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1485.t1.CDS1	Gchil1485.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 291952..294006 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1485.t1.exon1	Gchil1485.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 291952..294006 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1485.t1.stop1	Gchil1485.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 294004..294006 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1485.t1	Gchil1485.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 291952..294006 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:291952..294006+
coding sequence from alignment at tig00004403_pilon:291952..294006+

mRNA sequence

>Gchil1485.t1 ID=Gchil1485.t1|Name=Gchil1485.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=685bp
MRRQHQCDACARVGKVQVSQYRCPACLRCSCSLACVKDHKQHYNCSGVRD
KTAPVPKRNYDEHNLISDYALLEEAKRNKDQASRNRVKHFYNPRAPNSKL
PDPIPKHKQRVLGRQASMRGIDLRFMPNVFYRHRVNTTFVRPVDYANSRE
NDGVTTYDGFPRPFDKIMVWRVDVQFSGTDGGTRLVSIHDLDEEVNMNDV
LERAIKSLDIRKEPRMNGAVDPYLHYSGLPVTQLNAYIKNEVSLGARRAQ
PSSLPDFPKYKRRKMVHGRVDLGELELDTRGFIPVDTSNTLRESLYSALV
VEYPILYIAPKGSEEDKQLEQATKSLFNRPEPEADDSVRPPTRPMEPEER
HEDNVVNPVVVEMSEAHAVANRTDADPAPAPAPAPASAPAPAPASASATC
EGTQPEATSVPNSFDKEQFDDKIEQSSPVVAPIEEKVAQYPQPRGVKRKA
TAAETSDDDESDLSELERNITKRFTPHKKNGAKTGWTRDGKVRTAGEKRP
TSSPVPIPRFRSVLPPIHYDKGEGTQASKQKEMTRRNESLPATSEAEESE
NNEIGGDNELDGGLSENESATQYVGDDESEQRVGDEVVGQKRSMKKPTQE
RRRPTKRQRFGDLETIEAKEDEKRGECEADQSDDEDGEKPKPRRQSGVES
PPLPFLKVDSVMLDTRIPRRKKMTDSNGMETLAC*

spliced messenger RNA

>Gchil1485.t1 ID=Gchil1485.t1|Name=Gchil1485.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2055bp|location=Sequence derived from alignment at tig00004403_pilon:291952..294006+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCGCCAACACCAGTGCGATGCGTGCGCCCGCGTCGGAAAAGTTCA
GGTTTCGCAGTATCGATGTCCGGCCTGCTTGCGCTGCTCGTGCTCGCTTG
CGTGTGTCAAGGACCACAAGCAGCACTACAACTGCTCCGGCGTGCGAGAC
AAGACCGCCCCAGTCCCGAAACGTAACTATGACGAACACAATTTAATCAG
TGACTACGCCTTGCTCGAGGAAGCTAAACGAAACAAGGATCAAGCCAGTC
GCAATCGCGTCAAACATTTTTACAACCCACGCGCCCCCAACAGCAAATTG
CCCGATCCCATTCCCAAACACAAGCAACGCGTCTTGGGACGCCAGGCTTC
CATGCGTGGCATTGATCTGCGCTTCATGCCAAATGTTTTCTATCGTCACA
GGGTCAATACTACATTTGTCCGCCCTGTTGATTATGCAAACTCCAGGGAG
AACGATGGTGTGACAACCTACGACGGCTTCCCGCGCCCCTTCGACAAGAT
CATGGTCTGGCGTGTCGACGTGCAGTTTTCTGGCACCGATGGCGGAACAA
GGCTCGTCAGTATTCATGATCTCGATGAGGAGGTAAACATGAACGACGTG
CTCGAGCGCGCCATCAAATCACTTGACATTCGAAAGGAGCCCAGGATGAA
CGGCGCCGTGGATCCTTATCTTCACTACTCTGGGCTGCCGGTAACCCAGC
TCAATGCTTACATCAAGAATGAGGTCAGTCTCGGAGCTAGAAGAGCACAA
CCATCCAGTCTTCCCGATTTTCCAAAGTACAAGCGCCGGAAGATGGTTCA
TGGTCGCGTCGATCTTGGCGAACTCGAATTGGACACGCGCGGTTTCATTC
CCGTCGACACAAGTAACACATTGCGCGAATCCTTGTACAGCGCTCTGGTC
GTGGAATACCCAATTCTCTACATCGCCCCAAAAGGATCTGAGGAAGATAA
GCAACTAGAACAGGCGACCAAGAGTCTGTTCAACAGGCCGGAGCCGGAGG
CCGATGACTCTGTCCGCCCTCCCACAAGGCCCATGGAGCCTGAGGAACGC
CACGAGGATAATGTTGTCAATCCAGTCGTGGTTGAAATGAGCGAAGCCCA
TGCTGTTGCGAACCGTACCGACGCTGAccctgctcccgcccctgctcctg
cccctgcctctgcccctgcccctgctcctgcTTCTGCTTCTGCAACATGC
GAAGGTACCCAACCTGAAGCTACATCAGTGCCGAACAGCTTCGACAAAGA
ACAATTCGACGACAAAATTGAACAGAGCAGCCCTGTGGTAGCACCAATTG
AAGAGAAAGTCGCGCAATATCCGCAACCTCGAGGCGTGAAGAGGAAAGCA
ACGGCGGCGGAAACTAGTGACGATGATGAGAGTGACCTTTCCGAACTGGA
AAGAAACATTACAAAACGTTTCACTCCTCACAAGAAGAATGGTGCGAAGA
CAGGCTGGACCCGAGACGGAAAGGTACGAACTGCTGGCGAGAAGAGGCCA
ACTTCTTCTCCTGTTCCCATCCCCAGATTTCGAAGCGTGTTGCCTCCAAT
TCACTATGACAAAGGCGAAGGGACTCAGGCTTCAAAACAGAAAGAGATGA
CGCGTCGTAATGAGAGCTTGCCAGCCACCTCTGAAGCTGAAGAATCGGAG
AATAATGAGATTGGGGGAGACAATGAGTTGGATGGCGGTCTCAGCGAAAA
CGAAAGCGCGACCCAGTACGTTGGCGATGACGAATCGGAGCAACGAGTAG
GTGACGAGGTAGTCGGCCAAAAAAGGTCCATGAAAAAGCCCACTCAGGAG
AGACGAAGGCCGACGAAACGACAAAGATTTGGCGACCTCGAAACGATCGA
GGCCAAAGAAGATGAGAAGCGCGGTGAATGCGAAGCTGACCAAAGCGACG
ACGAGGACGGAGAAAAGCCAAAACCTCGGAGACAGTCTGGTGTGGAGAGT
CCACCACTTCCGTTTCTCAAGGTTGACTCGGTGATGTTAGATACCCGTAT
TCCGAGGCGAAAGAAAATGACCGATTCAAACGGAATGGAGACCCTAGCAT
GCTAG

protein sequence of Gchil1485.t1

>Gchil1485.t1 ID=Gchil1485.t1|Name=Gchil1485.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=685bp
MRRQHQCDACARVGKVQVSQYRCPACLRCSCSLACVKDHKQHYNCSGVRD
KTAPVPKRNYDEHNLISDYALLEEAKRNKDQASRNRVKHFYNPRAPNSKL
PDPIPKHKQRVLGRQASMRGIDLRFMPNVFYRHRVNTTFVRPVDYANSRE
NDGVTTYDGFPRPFDKIMVWRVDVQFSGTDGGTRLVSIHDLDEEVNMNDV
LERAIKSLDIRKEPRMNGAVDPYLHYSGLPVTQLNAYIKNEVSLGARRAQ
PSSLPDFPKYKRRKMVHGRVDLGELELDTRGFIPVDTSNTLRESLYSALV
VEYPILYIAPKGSEEDKQLEQATKSLFNRPEPEADDSVRPPTRPMEPEER
HEDNVVNPVVVEMSEAHAVANRTDADPAPAPAPAPASAPAPAPASASATC
EGTQPEATSVPNSFDKEQFDDKIEQSSPVVAPIEEKVAQYPQPRGVKRKA
TAAETSDDDESDLSELERNITKRFTPHKKNGAKTGWTRDGKVRTAGEKRP
TSSPVPIPRFRSVLPPIHYDKGEGTQASKQKEMTRRNESLPATSEAEESE
NNEIGGDNELDGGLSENESATQYVGDDESEQRVGDEVVGQKRSMKKPTQE
RRRPTKRQRFGDLETIEAKEDEKRGECEADQSDDEDGEKPKPRRQSGVES
PPLPFLKVDSVMLDTRIPRRKKMTDSNGMETLAC*

mRNA from alignment at tig00004403_pilon:291952..294006+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1485.t1 ID=Gchil1485.t1|Name=Gchil1485.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2055bp|location=Sequence derived from alignment at tig00004403_pilon:291952..294006+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCGCCAACACCAGTGCGATGCGTGCGCCCGCGTCGGAAAAGTTCA
GGTTTCGCAGTATCGATGTCCGGCCTGCTTGCGCTGCTCGTGCTCGCTTG
CGTGTGTCAAGGACCACAAGCAGCACTACAACTGCTCCGGCGTGCGAGAC
AAGACCGCCCCAGTCCCGAAACGTAACTATGACGAACACAATTTAATCAG
TGACTACGCCTTGCTCGAGGAAGCTAAACGAAACAAGGATCAAGCCAGTC
GCAATCGCGTCAAACATTTTTACAACCCACGCGCCCCCAACAGCAAATTG
CCCGATCCCATTCCCAAACACAAGCAACGCGTCTTGGGACGCCAGGCTTC
CATGCGTGGCATTGATCTGCGCTTCATGCCAAATGTTTTCTATCGTCACA
GGGTCAATACTACATTTGTCCGCCCTGTTGATTATGCAAACTCCAGGGAG
AACGATGGTGTGACAACCTACGACGGCTTCCCGCGCCCCTTCGACAAGAT
CATGGTCTGGCGTGTCGACGTGCAGTTTTCTGGCACCGATGGCGGAACAA
GGCTCGTCAGTATTCATGATCTCGATGAGGAGGTAAACATGAACGACGTG
CTCGAGCGCGCCATCAAATCACTTGACATTCGAAAGGAGCCCAGGATGAA
CGGCGCCGTGGATCCTTATCTTCACTACTCTGGGCTGCCGGTAACCCAGC
TCAATGCTTACATCAAGAATGAGGTCAGTCTCGGAGCTAGAAGAGCACAA
CCATCCAGTCTTCCCGATTTTCCAAAGTACAAGCGCCGGAAGATGGTTCA
TGGTCGCGTCGATCTTGGCGAACTCGAATTGGACACGCGCGGTTTCATTC
CCGTCGACACAAGTAACACATTGCGCGAATCCTTGTACAGCGCTCTGGTC
GTGGAATACCCAATTCTCTACATCGCCCCAAAAGGATCTGAGGAAGATAA
GCAACTAGAACAGGCGACCAAGAGTCTGTTCAACAGGCCGGAGCCGGAGG
CCGATGACTCTGTCCGCCCTCCCACAAGGCCCATGGAGCCTGAGGAACGC
CACGAGGATAATGTTGTCAATCCAGTCGTGGTTGAAATGAGCGAAGCCCA
TGCTGTTGCGAACCGTACCGACGCTGAccctgctcccgcccctgctcctg
cccctgcctctgcccctgcccctgctcctgcTTCTGCTTCTGCAACATGC
GAAGGTACCCAACCTGAAGCTACATCAGTGCCGAACAGCTTCGACAAAGA
ACAATTCGACGACAAAATTGAACAGAGCAGCCCTGTGGTAGCACCAATTG
AAGAGAAAGTCGCGCAATATCCGCAACCTCGAGGCGTGAAGAGGAAAGCA
ACGGCGGCGGAAACTAGTGACGATGATGAGAGTGACCTTTCCGAACTGGA
AAGAAACATTACAAAACGTTTCACTCCTCACAAGAAGAATGGTGCGAAGA
CAGGCTGGACCCGAGACGGAAAGGTACGAACTGCTGGCGAGAAGAGGCCA
ACTTCTTCTCCTGTTCCCATCCCCAGATTTCGAAGCGTGTTGCCTCCAAT
TCACTATGACAAAGGCGAAGGGACTCAGGCTTCAAAACAGAAAGAGATGA
CGCGTCGTAATGAGAGCTTGCCAGCCACCTCTGAAGCTGAAGAATCGGAG
AATAATGAGATTGGGGGAGACAATGAGTTGGATGGCGGTCTCAGCGAAAA
CGAAAGCGCGACCCAGTACGTTGGCGATGACGAATCGGAGCAACGAGTAG
GTGACGAGGTAGTCGGCCAAAAAAGGTCCATGAAAAAGCCCACTCAGGAG
AGACGAAGGCCGACGAAACGACAAAGATTTGGCGACCTCGAAACGATCGA
GGCCAAAGAAGATGAGAAGCGCGGTGAATGCGAAGCTGACCAAAGCGACG
ACGAGGACGGAGAAAAGCCAAAACCTCGGAGACAGTCTGGTGTGGAGAGT
CCACCACTTCCGTTTCTCAAGGTTGACTCGGTGATGTTAGATACCCGTAT
TCCGAGGCGAAAGAAAATGACCGATTCAAACGGAATGGAGACCCTAGCAT
GCTAG

Coding sequence (CDS) from alignment at tig00004403_pilon:291952..294006+

>Gchil1485.t1 ID=Gchil1485.t1|Name=Gchil1485.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2055bp|location=Sequence derived from alignment at tig00004403_pilon:291952..294006+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCGCCAACACCAGTGCGATGCGTGCGCCCGCGTCGGAAAAGTTCA
GGTTTCGCAGTATCGATGTCCGGCCTGCTTGCGCTGCTCGTGCTCGCTTG
CGTGTGTCAAGGACCACAAGCAGCACTACAACTGCTCCGGCGTGCGAGAC
AAGACCGCCCCAGTCCCGAAACGTAACTATGACGAACACAATTTAATCAG
TGACTACGCCTTGCTCGAGGAAGCTAAACGAAACAAGGATCAAGCCAGTC
GCAATCGCGTCAAACATTTTTACAACCCACGCGCCCCCAACAGCAAATTG
CCCGATCCCATTCCCAAACACAAGCAACGCGTCTTGGGACGCCAGGCTTC
CATGCGTGGCATTGATCTGCGCTTCATGCCAAATGTTTTCTATCGTCACA
GGGTCAATACTACATTTGTCCGCCCTGTTGATTATGCAAACTCCAGGGAG
AACGATGGTGTGACAACCTACGACGGCTTCCCGCGCCCCTTCGACAAGAT
CATGGTCTGGCGTGTCGACGTGCAGTTTTCTGGCACCGATGGCGGAACAA
GGCTCGTCAGTATTCATGATCTCGATGAGGAGGTAAACATGAACGACGTG
CTCGAGCGCGCCATCAAATCACTTGACATTCGAAAGGAGCCCAGGATGAA
CGGCGCCGTGGATCCTTATCTTCACTACTCTGGGCTGCCGGTAACCCAGC
TCAATGCTTACATCAAGAATGAGGTCAGTCTCGGAGCTAGAAGAGCACAA
CCATCCAGTCTTCCCGATTTTCCAAAGTACAAGCGCCGGAAGATGGTTCA
TGGTCGCGTCGATCTTGGCGAACTCGAATTGGACACGCGCGGTTTCATTC
CCGTCGACACAAGTAACACATTGCGCGAATCCTTGTACAGCGCTCTGGTC
GTGGAATACCCAATTCTCTACATCGCCCCAAAAGGATCTGAGGAAGATAA
GCAACTAGAACAGGCGACCAAGAGTCTGTTCAACAGGCCGGAGCCGGAGG
CCGATGACTCTGTCCGCCCTCCCACAAGGCCCATGGAGCCTGAGGAACGC
CACGAGGATAATGTTGTCAATCCAGTCGTGGTTGAAATGAGCGAAGCCCA
TGCTGTTGCGAACCGTACCGACGCTGAccctgctcccgcccctgctcctg
cccctgcctctgcccctgcccctgctcctgcTTCTGCTTCTGCAACATGC
GAAGGTACCCAACCTGAAGCTACATCAGTGCCGAACAGCTTCGACAAAGA
ACAATTCGACGACAAAATTGAACAGAGCAGCCCTGTGGTAGCACCAATTG
AAGAGAAAGTCGCGCAATATCCGCAACCTCGAGGCGTGAAGAGGAAAGCA
ACGGCGGCGGAAACTAGTGACGATGATGAGAGTGACCTTTCCGAACTGGA
AAGAAACATTACAAAACGTTTCACTCCTCACAAGAAGAATGGTGCGAAGA
CAGGCTGGACCCGAGACGGAAAGGTACGAACTGCTGGCGAGAAGAGGCCA
ACTTCTTCTCCTGTTCCCATCCCCAGATTTCGAAGCGTGTTGCCTCCAAT
TCACTATGACAAAGGCGAAGGGACTCAGGCTTCAAAACAGAAAGAGATGA
CGCGTCGTAATGAGAGCTTGCCAGCCACCTCTGAAGCTGAAGAATCGGAG
AATAATGAGATTGGGGGAGACAATGAGTTGGATGGCGGTCTCAGCGAAAA
CGAAAGCGCGACCCAGTACGTTGGCGATGACGAATCGGAGCAACGAGTAG
GTGACGAGGTAGTCGGCCAAAAAAGGTCCATGAAAAAGCCCACTCAGGAG
AGACGAAGGCCGACGAAACGACAAAGATTTGGCGACCTCGAAACGATCGA
GGCCAAAGAAGATGAGAAGCGCGGTGAATGCGAAGCTGACCAAAGCGACG
ACGAGGACGGAGAAAAGCCAAAACCTCGGAGACAGTCTGGTGTGGAGAGT
CCACCACTTCCGTTTCTCAAGGTTGACTCGGTGATGTTAGATACCCGTAT
TCCGAGGCGAAAGAAAATGACCGATTCAAACGGAATGGAGACCCTAGCAT
GCTAG