Gchil1483.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1483.t1
Unique NameGchil1483.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length452
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:289359..290714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX32173
PFAMscNMP_binding
Max annot lvl2759|Eukaryota
Evalue2.12e-89
EggNOG OGs28KCE@1|root,2QSTD@2759|Eukaryota
DescriptionCyclic nucleotide-monophosphate binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1483Gchil1483Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 289359..290714 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1483.t1.stop1Gchil1483.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 289359..289361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1483.t1.CDS1Gchil1483.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 289359..290714 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1483.t1.exon1Gchil1483.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 289359..290714 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1483.t1.start1Gchil1483.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 290712..290714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1483.t1Gchil1483.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 289359..290714 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1483.t1 ID=Gchil1483.t1|Name=Gchil1483.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=452bp
MHAADTPAPKQPLSERDVRDAATRLARSPMFHRCDPPQLLELARRMQKLV
FRRGDLIVTQNRPADRMLVLADGYVRRLATGPDGVERQLHAVDANTVAEL
QVTAAAPLNASAKCVTHSCTAYAISRDAFRSHLNRTPHLSTQVIESLSDH
VLSNPRRFRTPLMSQRANEINLSAVAVASVVESYYRSALNAILNRRLSGI
SAPLFPNMHVQVPARVLYITGFKSLRAILDRDIDPDAYQTHPARVAVRFC
KTIAPGVIMTPISSILEASNVGHVNSQPLLRRSLHGSVPRLAREVVFGVG
LNQLSDYMEERYRSVAPNALAANMAGSLTAGVVAGYLSHVPHNLSTYRLL
NPHKSYSELFELFVNKSVPEHLIPNALPPSVVPFTKTLLACLLPRGVLIR
TVQICGSFAILNGIISLIEAESRNRVARVIESVTEETAAEEGVKVARSQS
E*
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spliced messenger RNA

>Gchil1483.t1 ID=Gchil1483.t1|Name=Gchil1483.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00004403_pilon:289359..290714- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGCCGCCGACACGCCCGCGCCGAAGCAGCCACTGTCGGAGCGCGA
CGTGCGCGACGCTGCCACCCGTCTGGCGCGCTCGCCCATGTTCCATCGCT
GCGACCCGCCGCAGCTGCTCGAGCTGGCGCGCCGCATGCAAAAGCTCGTC
TTTCGTCGTGGCGATCTCATCGTCACCCAGAATCGTCCCGCCGACCGTAT
GCTCGTCCTAGCCGATGGATATGTCCGCCGCCTCGCCACCGGTCCCGACG
GCGTTGAGCGCCAGTTGCACGCCGTCGATGCCAATACAGTTGCCGAGCTT
CAAGTCACCGCCGCTGCCCCGTTGAATGCGTCTGCCAAGTGTGTCACACA
CTCCTGCACTGCCTACGCCATCAGTCGCGACGCCTTTCGTTCGCACTTGA
ATCGCACCCCGCACTTGAGCACCCAGGTTATTGAATCGCTTTCCGATCAC
GTCCTCTCCAACCCACGCCGCTTTCGCACCCCGCTCATGTCGCAGCGCGC
CAACGAGATCAATCTCAGTGCCGTTGCCGTCGCCTCCGTCGTCGAGTCCT
ACTACCGATCCGCGCTCAACGCCATTCTCAATCGCCGCCTCAGTGGCATA
TCCGCTCCTCTCTTCCCCAACATGCACGTGCAGGTGCCGGCTCGTGTGTT
GTACATCACCGGCTTTAAGAGTTTGCGTGCAATACTGGATCGAGACATTG
ACCCAGATGCGTACCAAACCCACCCTGCTAGAGTCGCTGTTAGATTTTGC
AAAACCATTGCACCAGGAGTGATCATGACCCCCATCTCAAGCATCTTGGA
GGCTTCCAACGTCGGCCACGTCAACTCTCAACCTCTGTTACGCAGAAGCT
TGCACGGTTCCGTTCCGCGTCTTGCCAGAGAAGTAGTGTTTGGCGTTGGT
CTCAACCAGCTCTCCGACTACATGGAAGAGAGATATCGTTCAGTTGCACC
AAACGCACTGGCCGCTAACATGGCCGGTTCGCTCACCGCGGGTGTTGTTG
CGGGCTATCTCTCGCATGTGCCGCACAATCTCAGCACGTATAGGCTGCTC
AACCCTCACAAATCCTACTCTGAGTTGTTTGAGTTGTTTGTCAACAAATC
TGTGCCAGAGCATCTAATCCCCAACGCGCTGCCGCCTTCTGTTGTACCGT
TTACCAAGACGCTGTTAGCCTGCCTGCTTCCCCGAGGCGTGCTGATCCGA
ACTGTTCAGATATGTGGGTCGTTTGCCATTCTAAACGGAATCATATCACT
TATAGAAGCAGAAAGTAGAAACCGCGTGGCGAGAGTGATCGAATCTGTCA
CTGAAGAAACTGCTGCAGAAGAAGGTGTCAAGGTAGCCCGCTCTCAATCG
GAGTAA
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protein sequence of Gchil1483.t1

>Gchil1483.t1 ID=Gchil1483.t1|Name=Gchil1483.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=452bp
MHAADTPAPKQPLSERDVRDAATRLARSPMFHRCDPPQLLELARRMQKLV
FRRGDLIVTQNRPADRMLVLADGYVRRLATGPDGVERQLHAVDANTVAEL
QVTAAAPLNASAKCVTHSCTAYAISRDAFRSHLNRTPHLSTQVIESLSDH
VLSNPRRFRTPLMSQRANEINLSAVAVASVVESYYRSALNAILNRRLSGI
SAPLFPNMHVQVPARVLYITGFKSLRAILDRDIDPDAYQTHPARVAVRFC
KTIAPGVIMTPISSILEASNVGHVNSQPLLRRSLHGSVPRLAREVVFGVG
LNQLSDYMEERYRSVAPNALAANMAGSLTAGVVAGYLSHVPHNLSTYRLL
NPHKSYSELFELFVNKSVPEHLIPNALPPSVVPFTKTLLACLLPRGVLIR
TVQICGSFAILNGIISLIEAESRNRVARVIESVTEETAAEEGVKVARSQS
E*
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mRNA from alignment at tig00004403_pilon:289359..290714-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1483.t1 ID=Gchil1483.t1|Name=Gchil1483.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00004403_pilon:289359..290714- (Gracilaria chilensis NLEC103_M9 male)
ATGCACGCCGCCGACACGCCCGCGCCGAAGCAGCCACTGTCGGAGCGCGA
CGTGCGCGACGCTGCCACCCGTCTGGCGCGCTCGCCCATGTTCCATCGCT
GCGACCCGCCGCAGCTGCTCGAGCTGGCGCGCCGCATGCAAAAGCTCGTC
TTTCGTCGTGGCGATCTCATCGTCACCCAGAATCGTCCCGCCGACCGTAT
GCTCGTCCTAGCCGATGGATATGTCCGCCGCCTCGCCACCGGTCCCGACG
GCGTTGAGCGCCAGTTGCACGCCGTCGATGCCAATACAGTTGCCGAGCTT
CAAGTCACCGCCGCTGCCCCGTTGAATGCGTCTGCCAAGTGTGTCACACA
CTCCTGCACTGCCTACGCCATCAGTCGCGACGCCTTTCGTTCGCACTTGA
ATCGCACCCCGCACTTGAGCACCCAGGTTATTGAATCGCTTTCCGATCAC
GTCCTCTCCAACCCACGCCGCTTTCGCACCCCGCTCATGTCGCAGCGCGC
CAACGAGATCAATCTCAGTGCCGTTGCCGTCGCCTCCGTCGTCGAGTCCT
ACTACCGATCCGCGCTCAACGCCATTCTCAATCGCCGCCTCAGTGGCATA
TCCGCTCCTCTCTTCCCCAACATGCACGTGCAGGTGCCGGCTCGTGTGTT
GTACATCACCGGCTTTAAGAGTTTGCGTGCAATACTGGATCGAGACATTG
ACCCAGATGCGTACCAAACCCACCCTGCTAGAGTCGCTGTTAGATTTTGC
AAAACCATTGCACCAGGAGTGATCATGACCCCCATCTCAAGCATCTTGGA
GGCTTCCAACGTCGGCCACGTCAACTCTCAACCTCTGTTACGCAGAAGCT
TGCACGGTTCCGTTCCGCGTCTTGCCAGAGAAGTAGTGTTTGGCGTTGGT
CTCAACCAGCTCTCCGACTACATGGAAGAGAGATATCGTTCAGTTGCACC
AAACGCACTGGCCGCTAACATGGCCGGTTCGCTCACCGCGGGTGTTGTTG
CGGGCTATCTCTCGCATGTGCCGCACAATCTCAGCACGTATAGGCTGCTC
AACCCTCACAAATCCTACTCTGAGTTGTTTGAGTTGTTTGTCAACAAATC
TGTGCCAGAGCATCTAATCCCCAACGCGCTGCCGCCTTCTGTTGTACCGT
TTACCAAGACGCTGTTAGCCTGCCTGCTTCCCCGAGGCGTGCTGATCCGA
ACTGTTCAGATATGTGGGTCGTTTGCCATTCTAAACGGAATCATATCACT
TATAGAAGCAGAAAGTAGAAACCGCGTGGCGAGAGTGATCGAATCTGTCA
CTGAAGAAACTGCTGCAGAAGAAGGTGTCAAGGTAGCCCGCTCTCAATCG
GAGTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:289359..290714-

>Gchil1483.t1 ID=Gchil1483.t1|Name=Gchil1483.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1356bp|location=Sequence derived from alignment at tig00004403_pilon:289359..290714- (Gracilaria chilensis NLEC103_M9 male)
ATGCACGCCGCCGACACGCCCGCGCCGAAGCAGCCACTGTCGGAGCGCGA
CGTGCGCGACGCTGCCACCCGTCTGGCGCGCTCGCCCATGTTCCATCGCT
GCGACCCGCCGCAGCTGCTCGAGCTGGCGCGCCGCATGCAAAAGCTCGTC
TTTCGTCGTGGCGATCTCATCGTCACCCAGAATCGTCCCGCCGACCGTAT
GCTCGTCCTAGCCGATGGATATGTCCGCCGCCTCGCCACCGGTCCCGACG
GCGTTGAGCGCCAGTTGCACGCCGTCGATGCCAATACAGTTGCCGAGCTT
CAAGTCACCGCCGCTGCCCCGTTGAATGCGTCTGCCAAGTGTGTCACACA
CTCCTGCACTGCCTACGCCATCAGTCGCGACGCCTTTCGTTCGCACTTGA
ATCGCACCCCGCACTTGAGCACCCAGGTTATTGAATCGCTTTCCGATCAC
GTCCTCTCCAACCCACGCCGCTTTCGCACCCCGCTCATGTCGCAGCGCGC
CAACGAGATCAATCTCAGTGCCGTTGCCGTCGCCTCCGTCGTCGAGTCCT
ACTACCGATCCGCGCTCAACGCCATTCTCAATCGCCGCCTCAGTGGCATA
TCCGCTCCTCTCTTCCCCAACATGCACGTGCAGGTGCCGGCTCGTGTGTT
GTACATCACCGGCTTTAAGAGTTTGCGTGCAATACTGGATCGAGACATTG
ACCCAGATGCGTACCAAACCCACCCTGCTAGAGTCGCTGTTAGATTTTGC
AAAACCATTGCACCAGGAGTGATCATGACCCCCATCTCAAGCATCTTGGA
GGCTTCCAACGTCGGCCACGTCAACTCTCAACCTCTGTTACGCAGAAGCT
TGCACGGTTCCGTTCCGCGTCTTGCCAGAGAAGTAGTGTTTGGCGTTGGT
CTCAACCAGCTCTCCGACTACATGGAAGAGAGATATCGTTCAGTTGCACC
AAACGCACTGGCCGCTAACATGGCCGGTTCGCTCACCGCGGGTGTTGTTG
CGGGCTATCTCTCGCATGTGCCGCACAATCTCAGCACGTATAGGCTGCTC
AACCCTCACAAATCCTACTCTGAGTTGTTTGAGTTGTTTGTCAACAAATC
TGTGCCAGAGCATCTAATCCCCAACGCGCTGCCGCCTTCTGTTGTACCGT
TTACCAAGACGCTGTTAGCCTGCCTGCTTCCCCGAGGCGTGCTGATCCGA
ACTGTTCAGATATGTGGGTCGTTTGCCATTCTAAACGGAATCATATCACT
TATAGAAGCAGAAAGTAGAAACCGCGTGGCGAGAGTGATCGAATCTGTCA
CTGAAGAAACTGCTGCAGAAGAAGGTGTCAAGGTAGCCCGCTCTCAATCG
GAGTAA
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