Gchil1481.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1481.t1
Unique NameGchil1481.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:286847..287476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog573413.Spirs_1682
PFAMsACT_6
Max annot lvl203691|Spirochaetes
KEGG koko:K03567
KEGG Pathwayko02026,map02026
Evalue1.35e-17
EggNOG OGsCOG2716@1|root,COG2716@2|Bacteria,2JAIX@203691|Spirochaetes
DescriptionACT domain
COG categoryE
BRITEko00000,ko00001,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1481Gchil1481Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 286847..287476 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1481.t1.stop1Gchil1481.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 286847..286849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1481.t1.CDS1Gchil1481.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 286847..287476 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1481.t1.exon1Gchil1481.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 286847..287476 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1481.t1.start1Gchil1481.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 287474..287476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1481.t1Gchil1481.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 286847..287476 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1481.t1 ID=Gchil1481.t1|Name=Gchil1481.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=210bp
MAPAPAVARLTTIACSSQPLHAPEPAAATNADPRPHHAVISLAGRDRIGI
VNAFTNVVDKYKANIEESKMAILGGDFAMIVYVSMEKNADAVNLERLLHE
ELPNFSITLRTTTAPADEHPKEPMWKISVEAPDQPGIASAVSQALATHGG
HVHEMETETSTAPFAGYALFILNGRVSMADTELDKISDALTLVEEKYGAS
ITLDQISRA*
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spliced messenger RNA

>Gchil1481.t1 ID=Gchil1481.t1|Name=Gchil1481.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00004403_pilon:286847..287476- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCGCTCCCGCGGTAGCTCGTCTTACCACCATTGCATGCTCGTC
GCAGCCGTTGCACGCACCCGAGCCAGCCGCCGCCACCAATGCAGATCCCC
GCCCCCACCATGCGGTGATCTCCCTGGCCGGTCGTGACCGCATCGGCATC
GTCAACGCCTTCACCAACGTCGTCGACAAATACAAGGCCAACATTGAGGA
GTCGAAGATGGCCATTTTGGGCGGCGACTTTGCCATGATTGTATACGTCA
GCATGGAAAAGAACGCTGATGCTGTTAATTTGGAGAGATTGTTGCACGAA
GAGTTGCCCAACTTTTCCATCACGCTGCGCACTACCACGGCCCCAGCCGA
CGAGCATCCGAAGGAGCCCATGTGGAAAATCTCCGTCGAGGCTCCGGACC
AGCCTGGCATTGCCTCCGCGGTATCGCAGGCACTTGCTACGCACGGCGGC
CATGTGCACGAGATGGAAACCGAGACTAGCACTGCTCCGTTCGCAGGCTA
CGCGCTCTTCATTCTGAACGGCCGTGTGAGCATGGCCGACACCGAGCTGG
ACAAGATCTCAGACGCTCTCACGCTTGTAGAAGAAAAGTATGGAGCCTCT
ATCACTCTGGACCAAATCTCAAGGGCGTAG
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protein sequence of Gchil1481.t1

>Gchil1481.t1 ID=Gchil1481.t1|Name=Gchil1481.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=210bp
MAPAPAVARLTTIACSSQPLHAPEPAAATNADPRPHHAVISLAGRDRIGI
VNAFTNVVDKYKANIEESKMAILGGDFAMIVYVSMEKNADAVNLERLLHE
ELPNFSITLRTTTAPADEHPKEPMWKISVEAPDQPGIASAVSQALATHGG
HVHEMETETSTAPFAGYALFILNGRVSMADTELDKISDALTLVEEKYGAS
ITLDQISRA*
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mRNA from alignment at tig00004403_pilon:286847..287476-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1481.t1 ID=Gchil1481.t1|Name=Gchil1481.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00004403_pilon:286847..287476- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCGCTCCCGCGGTAGCTCGTCTTACCACCATTGCATGCTCGTC
GCAGCCGTTGCACGCACCCGAGCCAGCCGCCGCCACCAATGCAGATCCCC
GCCCCCACCATGCGGTGATCTCCCTGGCCGGTCGTGACCGCATCGGCATC
GTCAACGCCTTCACCAACGTCGTCGACAAATACAAGGCCAACATTGAGGA
GTCGAAGATGGCCATTTTGGGCGGCGACTTTGCCATGATTGTATACGTCA
GCATGGAAAAGAACGCTGATGCTGTTAATTTGGAGAGATTGTTGCACGAA
GAGTTGCCCAACTTTTCCATCACGCTGCGCACTACCACGGCCCCAGCCGA
CGAGCATCCGAAGGAGCCCATGTGGAAAATCTCCGTCGAGGCTCCGGACC
AGCCTGGCATTGCCTCCGCGGTATCGCAGGCACTTGCTACGCACGGCGGC
CATGTGCACGAGATGGAAACCGAGACTAGCACTGCTCCGTTCGCAGGCTA
CGCGCTCTTCATTCTGAACGGCCGTGTGAGCATGGCCGACACCGAGCTGG
ACAAGATCTCAGACGCTCTCACGCTTGTAGAAGAAAAGTATGGAGCCTCT
ATCACTCTGGACCAAATCTCAAGGGCGTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:286847..287476-

>Gchil1481.t1 ID=Gchil1481.t1|Name=Gchil1481.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=630bp|location=Sequence derived from alignment at tig00004403_pilon:286847..287476- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCGCTCCCGCGGTAGCTCGTCTTACCACCATTGCATGCTCGTC
GCAGCCGTTGCACGCACCCGAGCCAGCCGCCGCCACCAATGCAGATCCCC
GCCCCCACCATGCGGTGATCTCCCTGGCCGGTCGTGACCGCATCGGCATC
GTCAACGCCTTCACCAACGTCGTCGACAAATACAAGGCCAACATTGAGGA
GTCGAAGATGGCCATTTTGGGCGGCGACTTTGCCATGATTGTATACGTCA
GCATGGAAAAGAACGCTGATGCTGTTAATTTGGAGAGATTGTTGCACGAA
GAGTTGCCCAACTTTTCCATCACGCTGCGCACTACCACGGCCCCAGCCGA
CGAGCATCCGAAGGAGCCCATGTGGAAAATCTCCGTCGAGGCTCCGGACC
AGCCTGGCATTGCCTCCGCGGTATCGCAGGCACTTGCTACGCACGGCGGC
CATGTGCACGAGATGGAAACCGAGACTAGCACTGCTCCGTTCGCAGGCTA
CGCGCTCTTCATTCTGAACGGCCGTGTGAGCATGGCCGACACCGAGCTGG
ACAAGATCTCAGACGCTCTCACGCTTGTAGAAGAAAAGTATGGAGCCTCT
ATCACTCTGGACCAAATCTCAAGGGCGTAG
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